Wall clock time and date at job start Tue Mar 31 2020 13:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.97173 * 2 1 4 4 C 1.38244 * 120.10954 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05682 * 0.02562 * 4 3 2 6 6 C 1.38708 * 119.94332 * 0.23564 * 5 4 3 7 7 O 1.35904 * 120.05289 * 179.72334 * 6 5 4 8 8 C 1.42896 * 116.99761 * 175.09048 * 7 6 5 9 9 H 1.09002 * 109.47318 * 328.46397 * 8 7 6 10 10 C 1.52999 * 109.47260 * 88.46610 * 8 7 6 11 11 C 1.50706 * 109.47213 * 208.46757 * 8 7 6 12 12 O 1.21273 * 119.99657 * 0.02562 * 11 8 7 13 13 N 1.34773 * 119.99596 * 180.02562 * 11 8 7 14 14 C 1.39138 * 119.99359 * 185.13455 * 13 11 8 15 15 C 1.38633 * 120.28647 * 327.44567 * 14 13 11 16 16 C 1.38224 * 120.03678 * 179.97438 * 15 14 13 17 17 C 1.38861 * 120.61436 * 0.04631 * 16 15 14 18 18 C 1.36465 * 120.57403 * 359.97438 * 17 16 15 19 19 C 1.40738 * 119.94723 * 359.65806 * 18 17 16 20 20 C 1.41063 * 120.30452 * 180.34273 * 19 18 17 21 21 H 1.08002 * 120.00140 * 144.83405 * 20 19 18 22 22 C 1.39963 * 120.00352 * 324.83702 * 20 19 18 23 23 N 1.30853 * 119.99581 * 357.79433 * 22 20 19 24 24 Si 1.86796 * 120.00192 * 177.79782 * 22 20 19 25 25 H 1.48494 * 109.47473 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47031 * 119.99900 * 24 22 20 27 27 H 1.48504 * 109.47161 * 239.99647 * 24 22 20 28 28 C 1.38124 * 119.97446 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46763 * 89.99950 * 1 2 3 30 30 H 1.08994 * 109.47235 * 210.00098 * 1 2 3 31 31 H 1.09001 * 109.47217 * 330.00386 * 1 2 3 32 32 H 1.07995 * 119.94603 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.96970 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.02572 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47507 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.46915 * 299.99949 * 10 8 7 37 37 H 1.08999 * 109.46748 * 60.00008 * 10 8 7 38 38 H 0.96994 * 120.01204 * 5.13677 * 13 11 8 39 39 H 1.08012 * 119.98200 * 0.02562 * 15 14 13 40 40 H 1.08006 * 119.69354 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.71289 * 179.97438 * 17 16 15 42 42 H 1.08010 * 120.02715 * 179.97438 * 18 17 16 43 43 H 0.96998 * 120.00180 * 179.97438 * 23 22 20 44 44 H 1.08004 * 120.02093 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0016 6 6 3.5845 -1.1958 -0.0071 7 8 4.2658 -2.3717 -0.0138 8 6 3.4934 -3.5695 0.0898 9 1 2.6034 -3.3773 0.6889 10 6 3.0771 -4.0305 -1.3085 11 6 4.3194 -4.6446 0.7480 12 8 5.4572 -4.4081 1.0946 13 7 3.7935 -5.8687 0.9513 14 6 4.5160 -6.8282 1.6536 15 6 5.8997 -6.8586 1.5738 16 6 6.6123 -7.8138 2.2741 17 6 5.9552 -8.7503 3.0612 18 6 4.5940 -8.7436 3.1574 19 6 3.8452 -7.7769 2.4607 20 6 2.4382 -7.7585 2.5605 21 1 1.9084 -6.8174 2.5518 22 6 1.7287 -8.9599 2.6709 23 7 2.3667 -10.1019 2.6380 24 14 -0.1290 -8.9331 2.8649 25 1 -0.6057 -7.5268 2.8722 26 1 -0.7555 -9.6617 1.7327 27 1 -0.5027 -9.5897 4.1435 28 6 2.1971 -1.1965 -0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6565 2.1324 0.0004 33 1 4.1175 2.1382 -0.0010 34 1 5.3552 0.0103 -0.0024 35 1 2.4883 -4.9444 -1.2295 36 1 2.4797 -3.2529 -1.7845 37 1 3.9672 -4.2228 -1.9076 38 1 2.9115 -6.0809 0.6081 39 1 6.4212 -6.1349 0.9647 40 1 7.6902 -7.8321 2.2083 41 1 6.5265 -9.4904 3.6018 42 1 4.0920 -9.4764 3.7719 43 1 1.8751 -10.9345 2.7149 44 1 1.6570 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550078314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:44 Heat of formation + Delta-G solvation = -44.531354 kcal Electronic energy + Delta-G solvation = -26655.980761 eV Core-core repulsion = 22923.526833 eV Total energy + Delta-G solvation = -3732.453928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84527 -40.83232 -39.20391 -38.33660 -35.64038 -35.47564 -33.92346 -32.76324 -31.50307 -30.88129 -30.06109 -27.80181 -27.16511 -25.84596 -23.94267 -23.10495 -22.50680 -22.24718 -20.93068 -19.31915 -19.03471 -18.66560 -17.66812 -17.15782 -16.92782 -16.61675 -16.58787 -16.02604 -15.73517 -15.45035 -15.10229 -14.84925 -14.48227 -14.41657 -14.30091 -14.13217 -14.00033 -13.62620 -13.44636 -13.29517 -13.08671 -12.94987 -12.83453 -12.77909 -12.63204 -12.34950 -12.12935 -12.01771 -11.94209 -11.72234 -11.56863 -11.09073 -11.00903 -10.52786 -9.76702 -9.26855 -9.15090 -8.83915 -8.48125 -6.36702 0.36533 0.46271 0.77263 1.03209 1.44120 1.51676 1.57388 1.60229 1.70509 2.24268 2.64359 2.79434 2.80861 3.50013 3.65018 3.69476 3.82458 3.85436 3.97362 4.17805 4.35918 4.43007 4.48183 4.56227 4.58841 4.61462 4.72295 4.74432 4.80796 4.85984 4.94102 5.04231 5.08811 5.17990 5.28737 5.30382 5.35483 5.40231 5.49791 5.65045 5.76279 5.81439 5.86524 6.09322 6.14700 6.23782 6.38056 6.61491 6.69721 6.93518 6.98477 7.27143 8.42947 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003398 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.064581 B = 8238.131956 C = 9973.416590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.076 4.076 5 C -0.179 4.179 6 C 0.110 3.890 7 O -0.312 6.312 8 C 0.077 3.923 9 H 0.119 0.881 10 C -0.167 4.167 11 C 0.499 3.501 12 O -0.561 6.561 13 N -0.625 5.625 14 C 0.016 3.984 15 C -0.111 4.111 16 C -0.220 4.220 17 C -0.121 4.121 18 C -0.160 4.160 19 C 0.075 3.925 20 C -0.492 4.492 21 H 0.082 0.918 22 C 0.035 3.965 23 N -0.837 5.837 24 Si 0.984 3.016 25 H -0.252 1.252 26 H -0.267 1.267 27 H -0.274 1.274 28 C -0.222 4.222 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.416 0.584 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.285 0.715 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 16.535 -7.311 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.093 4.093 5 C -0.198 4.198 6 C 0.065 3.935 7 O -0.225 6.225 8 C 0.017 3.983 9 H 0.137 0.863 10 C -0.224 4.224 11 C 0.286 3.714 12 O -0.440 6.440 13 N -0.269 5.269 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.239 4.239 17 C -0.140 4.140 18 C -0.180 4.180 19 C 0.071 3.929 20 C -0.523 4.523 21 H 0.101 0.899 22 C -0.178 4.178 23 N -0.464 5.464 24 Si 0.805 3.195 25 H -0.175 1.175 26 H -0.192 1.192 27 H -0.199 1.199 28 C -0.241 4.241 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.254 0.746 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.259 16.456 -7.092 19.334 hybrid contribution -0.608 -0.786 0.163 1.007 sum -7.866 15.670 -6.929 18.853 Atomic orbital electron populations 1.20889 0.88947 1.03842 1.03515 1.20105 0.97569 0.92117 0.95457 1.21323 0.94160 0.98454 1.04173 1.21266 0.94651 0.97258 0.96158 1.20672 1.00746 0.90388 1.08012 1.19390 0.91595 0.85515 0.96958 1.86167 1.36105 1.12273 1.87984 1.22216 0.93532 0.82627 0.99920 0.86343 1.22317 1.03104 1.04059 0.92969 1.20860 0.87709 0.83326 0.79501 1.90640 1.19935 1.81426 1.51990 1.42676 1.21016 1.10016 1.53224 1.17967 0.90958 0.97539 1.01338 1.20928 0.93047 0.98415 1.00687 1.20689 0.98812 0.99385 1.05040 1.20769 0.94804 0.98634 0.99801 1.21031 0.92913 1.01760 1.02286 1.17764 0.94417 0.91742 0.88963 1.19539 0.91199 0.94168 1.47385 0.89944 1.26700 1.05517 0.94234 0.91384 1.69858 1.39799 0.99303 1.37483 0.85112 0.76033 0.79807 0.78499 1.17549 1.19228 1.19903 1.21369 0.92261 1.00344 1.10119 0.89667 0.91180 0.89913 0.83271 0.82790 0.85737 0.88345 0.88652 0.91728 0.74621 0.87265 0.86683 0.86799 0.87219 0.90424 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.05 -0.96 5.88 -19.88 -0.12 -1.08 16 3 C -0.16 -2.73 9.70 22.28 0.22 -2.52 16 4 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16 5 C -0.18 -4.47 9.99 22.37 0.22 -4.24 16 6 C 0.11 3.05 6.64 22.50 0.15 3.19 16 7 O -0.31 -10.29 9.32 -73.43 -0.68 -10.98 16 8 C 0.08 2.24 2.64 29.85 0.08 2.32 16 9 H 0.12 2.94 6.04 -2.39 -0.01 2.93 16 10 C -0.17 -3.70 9.18 71.98 0.66 -3.04 16 11 C 0.50 19.66 7.09 87.66 0.62 20.28 16 12 O -0.56 -27.07 13.76 16.03 0.22 -26.85 16 13 N -0.62 -25.21 4.92 -302.29 -1.49 -26.69 16 14 C 0.02 0.80 6.38 38.87 0.25 1.05 16 15 C -0.11 -5.46 8.71 22.36 0.19 -5.27 16 16 C -0.22 -10.30 10.04 22.42 0.22 -10.07 16 17 C -0.12 -5.77 9.97 22.00 0.22 -5.55 16 18 C -0.16 -8.33 8.57 22.47 0.19 -8.13 16 19 C 0.07 3.88 5.52 -21.18 -0.12 3.77 16 20 C -0.49 -24.20 8.20 23.38 0.19 -24.00 16 21 H 0.08 3.79 7.63 -2.91 -0.02 3.77 16 22 C 0.04 1.64 5.36 85.26 0.46 2.10 16 23 N -0.84 -41.71 10.87 21.83 0.24 -41.48 16 24 Si 0.98 35.29 29.56 68.60 2.03 37.32 16 25 H -0.25 -8.54 7.11 99.48 0.71 -7.84 16 26 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 27 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 28 C -0.22 -4.98 8.09 22.36 0.18 -4.80 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.10 1.84 7.46 -2.39 -0.02 1.82 16 36 H 0.09 1.69 7.38 -2.39 -0.02 1.67 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.42 14.41 7.33 -92.71 -0.68 13.73 16 39 H 0.11 5.45 6.01 -2.90 -0.02 5.43 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.11 5.91 6.41 -2.91 -0.02 5.89 16 43 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 44 H 0.14 2.70 5.60 -2.91 -0.02 2.69 16 Total: -1.00 -67.21 366.64 5.23 -61.98 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: 0.35 Total: 44.57 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.56 Total: -37.87 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.25 Total: -68.17 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.46 Total: -37.83 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -67.21 5.23 -61.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550078314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.446 kcal (2) G-P(sol) polarization free energy of solvation -67.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds