Wall clock time and date at job start Tue Mar 31 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38291 * 119.97352 * 2 1 4 4 C 1.38237 * 120.11089 * 179.97438 * 3 2 1 5 5 C 1.38166 * 120.06076 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.93993 * 0.02562 * 5 4 3 7 7 O 1.35898 * 120.05326 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99936 * 182.89458 * 7 6 5 9 9 H 1.09004 * 109.46945 * 35.48648 * 8 7 6 10 10 C 1.52996 * 109.47199 * 275.48770 * 8 7 6 11 11 C 1.50700 * 109.47060 * 155.48157 * 8 7 6 12 12 O 1.21279 * 120.00023 * 5.00870 * 11 8 7 13 13 N 1.34772 * 119.99976 * 185.00064 * 11 8 7 14 14 C 1.39128 * 120.00209 * 174.94975 * 13 11 8 15 15 C 1.38645 * 120.27984 * 341.06117 * 14 13 11 16 16 C 1.38222 * 120.03242 * 179.70254 * 15 14 13 17 17 C 1.38866 * 120.61886 * 0.05164 * 16 15 14 18 18 C 1.36468 * 120.57644 * 359.97060 * 17 16 15 19 19 C 1.40741 * 119.94008 * 359.97438 * 18 17 16 20 20 C 1.41062 * 120.29852 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99935 * 145.04844 * 20 19 18 22 22 C 1.39960 * 120.00405 * 325.05254 * 20 19 18 23 23 N 1.30849 * 119.99455 * 349.46603 * 22 20 19 24 24 Si 1.86799 * 120.00422 * 169.46850 * 22 20 19 25 25 H 1.48508 * 109.46849 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47115 * 119.99649 * 24 22 20 27 27 H 1.48498 * 109.47002 * 240.00161 * 24 22 20 28 28 C 1.38128 * 119.97206 * 180.31128 * 2 1 3 29 29 H 1.08993 * 109.47537 * 89.99160 * 1 2 3 30 30 H 1.09002 * 109.47213 * 209.99789 * 1 2 3 31 31 H 1.09000 * 109.47222 * 329.99026 * 1 2 3 32 32 H 1.08003 * 119.94162 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.96960 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.03113 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47281 * 299.99070 * 10 8 7 36 36 H 1.09001 * 109.47347 * 60.00003 * 10 8 7 37 37 H 1.09002 * 109.46939 * 179.97438 * 10 8 7 38 38 H 0.96999 * 120.00031 * 354.94683 * 13 11 8 39 39 H 1.07999 * 119.98750 * 359.72846 * 15 14 13 40 40 H 1.08007 * 119.69237 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.71621 * 179.97438 * 17 16 15 42 42 H 1.07991 * 120.03191 * 179.97438 * 18 17 16 43 43 H 0.97006 * 119.99444 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.02550 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5845 -1.1958 -0.0005 7 8 4.2658 -2.3717 -0.0011 8 6 3.4906 -3.5705 -0.0665 9 1 2.6178 -3.4048 -0.6981 10 6 3.0350 -3.9607 1.3410 11 6 4.3287 -4.6794 -0.6487 12 8 5.5018 -4.4898 -0.8910 13 7 3.7746 -5.8820 -0.9001 14 6 4.5187 -6.8720 -1.5339 15 6 5.6572 -6.5392 -2.2517 16 6 6.3961 -7.5276 -2.8743 17 6 6.0094 -8.8587 -2.7902 18 6 4.8930 -9.2144 -2.0906 19 6 4.1236 -8.2276 -1.4465 20 6 2.9684 -8.5868 -0.7209 21 1 2.7038 -8.0457 0.1756 22 6 2.1653 -9.6445 -1.1625 23 7 2.3620 -10.1649 -2.3468 24 14 0.8125 -10.3131 -0.0614 25 1 0.7968 -9.5582 1.2174 26 1 -0.4989 -10.1628 -0.7416 27 1 1.0648 -11.7500 0.2156 28 6 2.1970 -1.1965 -0.0065 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6565 2.1325 0.0004 33 1 4.1175 2.1382 0.0010 34 1 5.3552 0.0103 0.0005 35 1 3.9078 -4.1265 1.9726 36 1 2.4288 -3.1586 1.7621 37 1 2.4434 -4.8748 1.2910 38 1 2.8569 -6.0572 -0.6391 39 1 5.9671 -5.5072 -2.3242 40 1 7.2823 -7.2622 -3.4317 41 1 6.5973 -9.6191 -3.2826 42 1 4.6001 -10.2522 -2.0313 43 1 1.8055 -10.8983 -2.6528 44 1 1.6570 -2.1318 -0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550078315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:49 Heat of formation + Delta-G solvation = -27.234602 kcal Electronic energy + Delta-G solvation = -26612.821760 eV Core-core repulsion = 22881.117875 eV Total energy + Delta-G solvation = -3731.703884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66159 -39.52911 -37.86190 -36.91562 -33.98596 -33.64806 -33.05198 -31.69195 -30.02127 -29.66193 -28.35797 -27.09224 -25.37869 -24.63101 -22.75757 -21.70232 -21.43602 -20.67576 -19.39691 -18.01058 -17.59569 -17.05741 -16.19631 -15.98094 -15.65305 -15.58197 -15.13315 -14.50954 -14.37939 -14.24717 -13.95035 -13.68495 -13.36707 -13.17761 -12.98451 -12.75152 -12.62350 -12.56015 -12.22487 -12.13992 -11.78163 -11.73316 -11.59493 -11.42684 -11.24075 -11.09353 -10.94392 -10.83876 -10.54724 -10.19784 -9.75257 -9.45027 -9.30348 -8.96691 -8.71635 -8.23540 -7.38514 -6.97936 -6.70297 -4.46175 1.18179 1.32423 2.48409 2.78645 2.82182 3.02092 3.04959 3.14242 3.35525 3.62368 3.86528 3.94277 4.53895 4.60296 4.66808 4.70570 4.89451 4.95083 5.02487 5.11269 5.21020 5.37477 5.39748 5.45476 5.54909 5.57598 5.60150 5.63536 5.94513 6.00615 6.20335 6.29752 6.30289 6.43270 6.46615 6.56562 6.64966 6.81499 7.00711 7.08115 7.21119 7.34187 7.59439 7.64631 7.89482 8.03779 8.05419 8.35872 8.49317 8.72721 8.78150 8.92189 10.17867 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003199 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.486923 B = 8750.068550 C =10284.583751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.165 4.165 4 C -0.077 4.077 5 C -0.158 4.158 6 C 0.140 3.860 7 O -0.282 6.282 8 C 0.068 3.932 9 H 0.096 0.904 10 C -0.176 4.176 11 C 0.500 3.500 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.027 3.973 15 C -0.110 4.110 16 C -0.213 4.213 17 C -0.119 4.119 18 C -0.137 4.137 19 C 0.102 3.898 20 C -0.480 4.480 21 H 0.075 0.925 22 C 0.078 3.922 23 N -0.802 5.802 24 Si 0.907 3.093 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.273 1.273 28 C -0.215 4.215 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.406 0.594 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.280 0.720 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 15.530 5.258 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.183 4.183 4 C -0.095 4.095 5 C -0.176 4.176 6 C 0.094 3.906 7 O -0.194 6.194 8 C 0.008 3.992 9 H 0.114 0.886 10 C -0.234 4.234 11 C 0.285 3.715 12 O -0.391 6.391 13 N -0.270 5.270 14 C -0.067 4.067 15 C -0.130 4.130 16 C -0.233 4.233 17 C -0.138 4.138 18 C -0.157 4.157 19 C 0.099 3.901 20 C -0.511 4.511 21 H 0.093 0.907 22 C -0.139 4.139 23 N -0.428 5.428 24 Si 0.732 3.268 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.198 1.198 28 C -0.234 4.234 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.242 0.758 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.839 15.477 4.943 16.953 hybrid contribution -1.352 -0.651 0.470 1.573 sum -6.191 14.826 5.413 16.954 Atomic orbital electron populations 1.20826 0.91058 1.02876 1.02562 1.19703 0.95964 0.92490 0.96586 1.20909 0.94216 0.97387 1.05815 1.20925 0.94077 0.97145 0.97375 1.20455 1.00631 0.89643 1.06913 1.19103 0.90539 0.86125 0.94816 1.86231 1.34428 1.11245 1.87520 1.22231 0.94174 0.84000 0.98776 0.88597 1.22335 1.02997 1.03008 0.95015 1.19908 0.88022 0.83465 0.80139 1.90610 1.15848 1.81416 1.51250 1.42779 1.16289 1.11136 1.56784 1.17891 0.97783 0.87391 1.03631 1.21120 0.95044 0.99807 0.97017 1.20400 1.02080 0.93172 1.07625 1.20505 0.97685 0.95212 1.00411 1.20792 0.94174 0.99086 1.01650 1.17321 0.92592 0.88000 0.92217 1.19247 1.07244 1.14816 1.09796 0.90689 1.25799 0.98243 0.95203 0.94606 1.69799 1.36116 1.20685 1.16177 0.86285 0.80184 0.79524 0.80831 1.18573 1.20050 1.19796 1.21208 0.93042 0.99094 1.10011 0.90899 0.91391 0.91401 0.86124 0.85446 0.85107 0.90546 0.90917 0.89887 0.75769 0.85427 0.89003 0.89258 0.86746 0.90957 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.05 -0.48 5.88 -104.64 -0.62 -1.10 16 3 C -0.17 -1.59 9.70 -39.56 -0.38 -1.97 16 4 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 5 C -0.16 -1.93 9.99 -39.43 -0.39 -2.33 16 6 C 0.14 1.91 6.59 -39.22 -0.26 1.66 16 7 O -0.28 -4.53 9.34 -39.28 -0.37 -4.89 16 8 C 0.07 1.00 2.64 -27.89 -0.07 0.93 16 9 H 0.10 1.20 6.19 -51.93 -0.32 0.88 16 10 C -0.18 -2.12 9.14 37.16 0.34 -1.78 16 11 C 0.50 9.60 7.03 -10.99 -0.08 9.52 16 12 O -0.51 -11.81 13.36 -14.30 -0.19 -12.00 16 13 N -0.63 -12.54 5.16 -9.48 -0.05 -12.59 16 14 C 0.03 0.64 6.54 -83.17 -0.54 0.10 16 15 C -0.11 -2.67 8.78 -39.44 -0.35 -3.01 16 16 C -0.21 -4.97 10.04 -39.35 -0.39 -5.37 16 17 C -0.12 -2.80 9.97 -39.99 -0.40 -3.20 16 18 C -0.14 -3.47 8.57 -39.27 -0.34 -3.81 16 19 C 0.10 2.59 5.48 -106.65 -0.58 2.01 16 20 C -0.48 -11.66 8.17 -37.87 -0.31 -11.97 16 21 H 0.08 1.70 7.36 -52.48 -0.39 1.32 16 22 C 0.08 1.85 5.22 -17.33 -0.09 1.76 16 23 N -0.80 -19.87 11.27 55.55 0.63 -19.24 16 24 Si 0.91 17.57 29.57 -169.99 -5.03 12.54 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 C -0.21 -2.52 7.92 -39.43 -0.31 -2.83 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.74 7.06 -51.93 -0.37 0.37 16 37 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 38 H 0.41 7.17 7.12 -40.82 -0.29 6.88 16 39 H 0.13 3.12 5.36 -52.49 -0.28 2.83 16 40 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.96 6.70 -52.49 -0.35 2.61 16 43 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 44 H 0.13 1.35 5.51 -52.49 -0.29 1.06 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -29.98 365.85 -9.94 -39.92 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.63 Total: 13.85 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -4.82 Total: -23.09 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.58 Total: -31.83 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.56 Total: -16.89 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.98 -9.94 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550078315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.681 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds