Wall clock time and date at job start Tue Mar 31 2020 13:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38291 * 119.97352 * 2 1 4 4 C 1.38237 * 120.11089 * 179.97438 * 3 2 1 5 5 C 1.38166 * 120.06076 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.93993 * 0.02562 * 5 4 3 7 7 O 1.35898 * 120.05326 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99936 * 182.89458 * 7 6 5 9 9 H 1.09004 * 109.46945 * 35.48648 * 8 7 6 10 10 C 1.52996 * 109.47199 * 275.48770 * 8 7 6 11 11 C 1.50700 * 109.47060 * 155.48157 * 8 7 6 12 12 O 1.21279 * 120.00023 * 5.00870 * 11 8 7 13 13 N 1.34772 * 119.99976 * 185.00064 * 11 8 7 14 14 C 1.39128 * 120.00209 * 174.94975 * 13 11 8 15 15 C 1.38645 * 120.27984 * 341.06117 * 14 13 11 16 16 C 1.38222 * 120.03242 * 179.70254 * 15 14 13 17 17 C 1.38866 * 120.61886 * 0.05164 * 16 15 14 18 18 C 1.36468 * 120.57644 * 359.97060 * 17 16 15 19 19 C 1.40741 * 119.94008 * 359.97438 * 18 17 16 20 20 C 1.41062 * 120.29852 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99935 * 145.04844 * 20 19 18 22 22 C 1.39960 * 120.00405 * 325.05254 * 20 19 18 23 23 N 1.30849 * 119.99455 * 349.46603 * 22 20 19 24 24 Si 1.86799 * 120.00422 * 169.46850 * 22 20 19 25 25 H 1.48508 * 109.46849 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47115 * 119.99649 * 24 22 20 27 27 H 1.48498 * 109.47002 * 240.00161 * 24 22 20 28 28 C 1.38128 * 119.97206 * 180.31128 * 2 1 3 29 29 H 1.08993 * 109.47537 * 89.99160 * 1 2 3 30 30 H 1.09002 * 109.47213 * 209.99789 * 1 2 3 31 31 H 1.09000 * 109.47222 * 329.99026 * 1 2 3 32 32 H 1.08003 * 119.94162 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.96960 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.03113 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47281 * 299.99070 * 10 8 7 36 36 H 1.09001 * 109.47347 * 60.00003 * 10 8 7 37 37 H 1.09002 * 109.46939 * 179.97438 * 10 8 7 38 38 H 0.96999 * 120.00031 * 354.94683 * 13 11 8 39 39 H 1.07999 * 119.98750 * 359.72846 * 15 14 13 40 40 H 1.08007 * 119.69237 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.71621 * 179.97438 * 17 16 15 42 42 H 1.07991 * 120.03191 * 179.97438 * 18 17 16 43 43 H 0.97006 * 119.99444 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.02550 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5845 -1.1958 -0.0005 7 8 4.2658 -2.3717 -0.0011 8 6 3.4906 -3.5705 -0.0665 9 1 2.6178 -3.4048 -0.6981 10 6 3.0350 -3.9607 1.3410 11 6 4.3287 -4.6794 -0.6487 12 8 5.5018 -4.4898 -0.8910 13 7 3.7746 -5.8820 -0.9001 14 6 4.5187 -6.8720 -1.5339 15 6 5.6572 -6.5392 -2.2517 16 6 6.3961 -7.5276 -2.8743 17 6 6.0094 -8.8587 -2.7902 18 6 4.8930 -9.2144 -2.0906 19 6 4.1236 -8.2276 -1.4465 20 6 2.9684 -8.5868 -0.7209 21 1 2.7038 -8.0457 0.1756 22 6 2.1653 -9.6445 -1.1625 23 7 2.3620 -10.1649 -2.3468 24 14 0.8125 -10.3131 -0.0614 25 1 0.7968 -9.5582 1.2174 26 1 -0.4989 -10.1628 -0.7416 27 1 1.0648 -11.7500 0.2156 28 6 2.1970 -1.1965 -0.0065 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6565 2.1325 0.0004 33 1 4.1175 2.1382 0.0010 34 1 5.3552 0.0103 0.0005 35 1 3.9078 -4.1265 1.9726 36 1 2.4288 -3.1586 1.7621 37 1 2.4434 -4.8748 1.2910 38 1 2.8569 -6.0572 -0.6391 39 1 5.9671 -5.5072 -2.3242 40 1 7.2823 -7.2622 -3.4317 41 1 6.5973 -9.6191 -3.2826 42 1 4.6001 -10.2522 -2.0313 43 1 1.8055 -10.8983 -2.6528 44 1 1.6570 -2.1318 -0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550078315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:48 Heat of formation + Delta-G solvation = -41.649210 kcal Electronic energy + Delta-G solvation = -26613.446824 eV Core-core repulsion = 22881.117875 eV Total energy + Delta-G solvation = -3732.328949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88398 -40.87432 -39.19620 -38.34286 -35.66872 -35.46087 -33.92984 -32.75772 -31.53379 -30.88782 -30.08102 -27.79329 -27.15884 -25.86590 -23.96066 -23.16532 -22.49142 -22.23109 -20.97277 -19.30505 -19.04237 -18.64151 -17.65642 -17.20034 -16.82018 -16.76205 -16.56827 -16.01844 -15.74498 -15.49038 -15.09914 -14.76647 -14.48661 -14.44864 -14.29266 -14.18969 -13.98494 -13.67168 -13.44374 -13.27568 -13.16411 -12.95706 -12.85564 -12.72664 -12.67950 -12.33647 -12.13488 -12.04427 -11.91802 -11.72652 -11.53868 -11.19753 -11.06754 -10.40398 -9.76136 -9.29557 -9.14563 -8.79517 -8.49579 -6.33249 0.36954 0.46929 0.75097 1.01903 1.44608 1.51942 1.57835 1.59663 1.70491 2.24223 2.63752 2.79798 2.80274 3.48221 3.66668 3.67582 3.82594 3.84523 3.97250 4.18060 4.36299 4.43356 4.49659 4.56124 4.57564 4.62739 4.71954 4.74606 4.81154 4.86077 4.94600 5.01843 5.05678 5.16836 5.27383 5.29456 5.35737 5.39017 5.50295 5.65582 5.75505 5.78888 5.86738 6.06779 6.14976 6.22413 6.38190 6.61681 6.69792 6.93452 6.97768 7.24277 8.42190 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003199 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.486923 B = 8750.068550 C =10284.583751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.076 4.076 5 C -0.179 4.179 6 C 0.111 3.889 7 O -0.312 6.312 8 C 0.078 3.922 9 H 0.120 0.880 10 C -0.169 4.169 11 C 0.498 3.502 12 O -0.557 6.557 13 N -0.623 5.623 14 C 0.021 3.979 15 C -0.128 4.128 16 C -0.219 4.219 17 C -0.123 4.123 18 C -0.160 4.160 19 C 0.076 3.924 20 C -0.498 4.498 21 H 0.086 0.914 22 C 0.038 3.962 23 N -0.835 5.835 24 Si 0.981 3.019 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.274 1.274 28 C -0.222 4.222 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.417 0.583 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.286 0.714 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 17.025 6.335 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.093 4.093 5 C -0.198 4.198 6 C 0.066 3.934 7 O -0.226 6.226 8 C 0.019 3.981 9 H 0.138 0.862 10 C -0.227 4.227 11 C 0.285 3.715 12 O -0.436 6.436 13 N -0.266 5.266 14 C -0.074 4.074 15 C -0.148 4.148 16 C -0.238 4.238 17 C -0.142 4.142 18 C -0.180 4.180 19 C 0.073 3.927 20 C -0.528 4.528 21 H 0.104 0.896 22 C -0.176 4.176 23 N -0.462 5.462 24 Si 0.803 3.197 25 H -0.175 1.175 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.241 4.241 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.255 0.745 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.384 16.998 6.028 19.489 hybrid contribution -0.527 -0.996 0.089 1.130 sum -7.911 16.002 6.117 18.870 Atomic orbital electron populations 1.20890 0.88957 1.04055 1.03318 1.20103 0.97556 0.92116 0.95455 1.21323 0.94162 0.98463 1.04188 1.21261 0.94648 0.97256 0.96165 1.20665 1.00744 0.90362 1.08031 1.19381 0.91605 0.85448 0.96968 1.86173 1.35828 1.12188 1.88364 1.22168 0.93272 0.82330 1.00344 0.86222 1.22332 1.02842 1.04507 0.92979 1.20771 0.87967 0.83894 0.78852 1.90577 1.17999 1.82121 1.52873 1.42740 1.16512 1.10889 1.56486 1.18036 0.97927 0.88022 1.03395 1.21279 0.95755 0.99897 0.97848 1.20693 1.02690 0.92990 1.07451 1.20739 0.97409 0.95967 1.00068 1.20840 0.95296 0.98652 1.03192 1.17658 0.93445 0.88618 0.93005 1.19517 1.07248 1.15839 1.10173 0.89559 1.26665 1.00405 0.94868 0.95645 1.69874 1.37364 1.21165 1.17790 0.85156 0.77027 0.78444 0.79087 1.17459 1.19316 1.19955 1.21379 0.92231 1.00362 1.10102 0.90216 0.90803 0.89738 0.83313 0.82825 0.85737 0.91967 0.88556 0.88455 0.74467 0.85935 0.86762 0.86857 0.88015 0.90378 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.01 71.23 0.71 -0.63 16 2 C -0.05 -0.93 5.88 -19.88 -0.12 -1.04 16 3 C -0.16 -2.66 9.70 22.28 0.22 -2.45 16 4 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 5 C -0.18 -4.37 9.99 22.37 0.22 -4.14 16 6 C 0.11 2.99 6.59 22.51 0.15 3.14 16 7 O -0.31 -10.17 9.34 -73.41 -0.69 -10.86 16 8 C 0.08 2.26 2.64 29.85 0.08 2.34 16 9 H 0.12 2.84 6.19 -2.39 -0.01 2.83 16 10 C -0.17 -3.85 9.14 71.98 0.66 -3.19 16 11 C 0.50 19.44 7.03 87.66 0.62 20.06 16 12 O -0.56 -26.47 13.36 15.96 0.21 -26.26 16 13 N -0.62 -25.15 5.16 -302.29 -1.56 -26.71 16 14 C 0.02 1.03 6.54 38.88 0.25 1.28 16 15 C -0.13 -6.36 8.78 22.36 0.20 -6.16 16 16 C -0.22 -10.32 10.04 22.42 0.22 -10.10 16 17 C -0.12 -5.86 9.97 22.01 0.22 -5.64 16 18 C -0.16 -8.30 8.57 22.47 0.19 -8.11 16 19 C 0.08 3.95 5.48 -21.18 -0.12 3.84 16 20 C -0.50 -24.22 8.17 23.38 0.19 -24.03 16 21 H 0.09 3.86 7.36 -2.91 -0.02 3.84 16 22 C 0.04 1.79 5.22 85.26 0.45 2.23 16 23 N -0.84 -41.73 11.27 21.83 0.25 -41.49 16 24 Si 0.98 35.21 29.57 68.60 2.03 37.24 16 25 H -0.25 -8.51 7.11 99.48 0.71 -7.81 16 26 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 27 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 28 C -0.22 -4.83 7.92 22.37 0.18 -4.65 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.78 8.09 -2.39 -0.02 0.77 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.75 7.06 -2.39 -0.02 1.73 16 37 H 0.10 1.92 7.77 -2.39 -0.02 1.90 16 38 H 0.42 14.58 7.12 -92.71 -0.66 13.92 16 39 H 0.12 6.21 5.36 -2.93 -0.02 6.19 16 40 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.10 5.44 6.70 -2.92 -0.02 5.42 16 43 H 0.29 13.01 8.30 -92.70 -0.77 12.24 16 44 H 0.14 2.61 5.51 -2.91 -0.02 2.59 16 Total: -1.00 -66.85 365.85 5.16 -61.68 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: 0.37 Total: 44.79 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.55 Total: -38.40 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.31 Total: -68.20 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.47 Total: -37.12 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -66.85 5.16 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550078315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.036 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds