Wall clock time and date at job start Tue Mar 31 2020 14:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 C 1.38261 * 119.94373 * 89.99555 * 3 2 1 5 5 C 1.38153 * 120.05268 * 180.02562 * 4 3 2 6 6 C 1.38724 * 119.94641 * 0.02562 * 5 4 3 7 7 O 1.35900 * 120.05626 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99895 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47118 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99954 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99901 * 179.97438 * 9 8 7 12 12 C 1.39131 * 119.99596 * 185.72517 * 11 9 8 13 13 C 1.38643 * 120.29102 * 19.23887 * 12 11 9 14 14 C 1.38218 * 120.03790 * 180.25521 * 13 12 11 15 15 C 1.38869 * 120.61130 * 359.74772 * 14 13 12 16 16 C 1.36452 * 120.58138 * 359.97438 * 15 14 13 17 17 C 1.40734 * 119.94318 * 0.02562 * 16 15 14 18 18 C 1.41075 * 120.30396 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00290 * 206.47144 * 18 17 16 20 20 C 1.39960 * 119.99628 * 26.47377 * 18 17 16 21 21 N 1.30856 * 120.00076 * 201.35880 * 20 18 17 22 22 Si 1.86801 * 120.00227 * 21.35675 * 20 18 17 23 23 H 1.48501 * 109.47328 * 270.00467 * 22 20 18 24 24 H 1.48502 * 109.46755 * 29.99960 * 22 20 18 25 25 H 1.48496 * 109.47355 * 149.99993 * 22 20 18 26 26 C 1.38735 * 119.88523 * 0.27873 * 6 5 4 27 27 C 1.38141 * 119.94684 * 359.46358 * 26 6 5 28 28 H 1.09000 * 109.47342 * 60.00533 * 1 2 3 29 29 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47530 * 300.00282 * 1 2 3 31 31 H 1.08996 * 109.47530 * 239.99717 * 2 1 3 32 32 H 1.09000 * 109.47342 * 119.99466 * 2 1 3 33 33 H 1.07996 * 119.97765 * 0.02572 * 4 3 2 34 34 H 1.08001 * 120.02077 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47747 * 59.99485 * 8 7 6 36 36 H 1.09004 * 109.47161 * 300.00094 * 8 7 6 37 37 H 0.96996 * 120.00122 * 5.72752 * 11 9 8 38 38 H 1.08002 * 119.97637 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.69243 * 179.76358 * 14 13 12 40 40 H 1.08004 * 119.70407 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.02954 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99239 * 354.93959 * 21 20 18 43 43 H 1.08006 * 120.02523 * 179.72651 * 26 6 5 44 44 H 1.07997 * 119.97401 * 180.23304 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0716 1.1981 5 6 2.7222 3.3743 1.2007 6 6 2.9529 4.0296 0.0000 7 8 3.4058 5.3109 -0.0001 8 6 3.6205 5.9231 -1.2733 9 6 4.1193 7.3313 -1.0759 10 8 4.2751 7.7680 0.0448 11 7 4.3922 8.1056 -2.1448 12 6 4.9645 9.3612 -1.9663 13 6 5.6157 9.6709 -0.7822 14 6 6.1777 10.9217 -0.6083 15 6 6.1023 11.8767 -1.6136 16 6 5.4723 11.5968 -2.7912 17 6 4.8917 10.3309 -2.9937 18 6 4.2381 10.0336 -4.2081 19 1 3.4553 9.2900 -4.2320 20 6 4.6041 10.7024 -5.3818 21 7 3.7710 10.7595 -6.3892 22 14 6.2819 11.5135 -5.5101 23 1 6.1910 12.9171 -5.0338 24 1 7.2569 10.7690 -4.6732 25 1 6.7317 11.4992 -6.9253 26 6 2.7153 3.3766 -1.2008 27 6 2.2605 2.0722 -1.1981 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0822 1.5611 2.1326 34 1 2.9013 3.8822 2.1368 35 1 2.6832 5.9438 -1.8293 36 1 4.3613 5.3505 -1.8315 37 1 4.1897 7.7875 -3.0385 38 1 5.6799 8.9360 0.0066 39 1 6.6803 11.1583 0.3178 40 1 6.5470 12.8493 -1.4623 41 1 5.4193 12.3461 -3.5672 42 1 2.9303 10.2771 -6.3512 43 1 2.8899 3.8862 -2.1369 44 1 2.0790 1.5621 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550081620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:43 Heat of formation + Delta-G solvation = -33.418039 kcal Electronic energy + Delta-G solvation = -25822.994348 eV Core-core repulsion = 22091.022329 eV Total energy + Delta-G solvation = -3731.972018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53021 -39.66898 -38.06256 -37.18516 -34.06801 -33.84403 -33.76092 -31.29601 -30.30526 -29.99559 -28.79270 -27.40029 -24.80713 -23.85352 -23.14498 -22.19450 -21.10846 -20.54590 -19.71936 -18.43262 -18.26925 -17.26433 -16.38865 -16.30658 -15.90688 -15.74259 -14.96378 -14.65886 -14.47740 -14.25457 -14.15350 -13.82620 -13.71589 -13.44238 -13.33469 -12.95942 -12.74060 -12.61554 -12.54234 -12.24575 -12.12008 -11.66280 -11.43798 -11.26255 -11.05832 -10.98614 -10.91397 -10.83724 -10.55532 -9.93081 -9.78735 -9.53661 -9.19208 -9.17534 -8.86832 -8.22723 -7.81150 -7.44137 -7.08986 -4.61867 1.15116 1.23452 2.30124 2.65446 2.70026 3.10596 3.15179 3.31824 3.49131 3.55578 3.92147 3.93758 4.47140 4.53072 4.54922 4.66734 4.80555 4.90685 5.00906 5.01810 5.06707 5.15514 5.22644 5.32218 5.34216 5.47486 5.58805 5.66420 5.84527 5.89567 6.07411 6.10600 6.15977 6.18454 6.33215 6.42562 6.54713 6.61661 6.75267 6.94374 7.20599 7.27862 7.31452 7.44784 7.60802 7.78604 7.85211 8.12270 8.26514 8.40960 8.60105 8.72381 9.88332 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.002429 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.409281 B =11522.507450 C =12676.133687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.078 4.078 5 C -0.147 4.147 6 C 0.129 3.871 7 O -0.287 6.287 8 C 0.044 3.956 9 C 0.498 3.502 10 O -0.514 6.514 11 N -0.630 5.630 12 C 0.021 3.979 13 C -0.091 4.091 14 C -0.230 4.230 15 C -0.086 4.086 16 C -0.234 4.234 17 C 0.088 3.912 18 C -0.524 4.524 19 H 0.075 0.925 20 C 0.046 3.954 21 N -0.811 5.811 22 Si 1.074 2.926 23 H -0.275 1.275 24 H -0.263 1.263 25 H -0.290 1.290 26 C -0.208 4.208 27 C -0.077 4.077 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.407 0.593 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.129 0.871 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -17.785 6.553 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.166 4.166 6 C 0.084 3.916 7 O -0.199 6.199 8 C -0.035 4.035 9 C 0.283 3.717 10 O -0.391 6.391 11 N -0.273 5.273 12 C -0.073 4.073 13 C -0.111 4.111 14 C -0.249 4.249 15 C -0.104 4.104 16 C -0.253 4.253 17 C 0.083 3.917 18 C -0.553 4.553 19 H 0.093 0.907 20 C -0.174 4.174 21 N -0.433 5.433 22 Si 0.900 3.100 23 H -0.202 1.202 24 H -0.187 1.187 25 H -0.218 1.218 26 C -0.227 4.227 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.147 0.853 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.126 -16.508 6.443 17.848 hybrid contribution -1.374 -1.045 0.147 1.733 sum -3.500 -17.553 6.591 19.074 Atomic orbital electron populations 1.21769 0.94942 1.01520 1.02279 1.20457 0.95997 0.92562 1.02637 1.19793 1.02935 0.96845 0.93074 1.20819 0.97593 0.93458 0.97756 1.20453 1.04569 0.95047 0.96486 1.19109 0.94448 0.83739 0.94351 1.86167 1.80212 1.23980 1.29566 1.22481 1.02388 0.93089 0.85550 1.19889 0.79836 0.86476 0.85493 1.90624 1.51356 1.73257 1.23854 1.42740 1.59511 1.16106 1.08964 1.17692 1.06035 0.84814 0.98714 1.21176 0.96073 0.97278 0.96557 1.20363 1.09969 0.95102 0.99510 1.20409 0.98370 0.97689 0.93978 1.20711 1.09101 0.96765 0.98730 1.17471 0.91616 0.89844 0.92725 1.20362 1.18683 1.22827 0.93424 0.90733 1.27267 1.04234 0.93954 0.91947 1.70576 1.08808 1.29636 1.34247 0.83575 0.73648 0.77243 0.75502 1.20180 1.18743 1.21764 1.21299 1.07347 0.96932 0.97130 1.20801 0.97296 0.93691 0.97694 0.92588 0.92562 0.92553 0.91241 0.91209 0.85488 0.84992 0.89163 0.89031 0.75683 0.85152 0.88515 0.88683 0.87299 0.90259 0.85297 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.08 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.13 -1.17 5.13 -104.60 -0.54 -1.71 16 4 C -0.08 -0.76 9.69 -39.60 -0.38 -1.14 16 5 C -0.15 -1.73 9.99 -39.43 -0.39 -2.13 16 6 C 0.13 1.70 6.69 -39.22 -0.26 1.43 16 7 O -0.29 -4.46 9.67 -39.34 -0.38 -4.84 16 8 C 0.04 0.60 5.22 36.00 0.19 0.79 16 9 C 0.50 9.25 7.75 -10.99 -0.09 9.16 16 10 O -0.51 -11.46 13.38 -14.36 -0.19 -11.66 16 11 N -0.63 -12.32 5.18 -9.47 -0.05 -12.37 16 12 C 0.02 0.49 6.54 -83.17 -0.54 -0.05 16 13 C -0.09 -2.10 8.78 -39.44 -0.35 -2.45 16 14 C -0.23 -5.05 10.04 -39.36 -0.39 -5.44 16 15 C -0.09 -1.88 9.96 -39.99 -0.40 -2.28 16 16 C -0.23 -5.55 7.33 -39.28 -0.29 -5.84 16 17 C 0.09 2.16 5.18 -106.65 -0.55 1.60 16 18 C -0.52 -13.00 8.75 -37.86 -0.33 -13.33 16 19 H 0.07 1.83 7.20 -52.49 -0.38 1.45 16 20 C 0.05 1.15 5.38 -17.32 -0.09 1.05 16 21 N -0.81 -20.57 13.66 55.55 0.76 -19.81 16 22 Si 1.07 23.29 25.01 -169.99 -4.25 19.03 16 23 H -0.27 -5.73 6.37 56.52 0.36 -5.37 16 24 H -0.26 -5.69 7.10 56.52 0.40 -5.29 16 25 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.21 -2.31 9.04 -39.43 -0.36 -2.66 16 27 C -0.08 -0.74 9.69 -39.61 -0.38 -1.13 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.09 1.03 7.65 -51.93 -0.40 0.64 16 36 H 0.09 1.02 7.67 -51.93 -0.40 0.62 16 37 H 0.41 7.06 7.33 -40.82 -0.30 6.76 16 38 H 0.13 3.03 5.39 -52.49 -0.28 2.74 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.11 2.54 4.35 -52.49 -0.23 2.31 16 42 H 0.29 7.02 8.73 -40.82 -0.36 6.67 16 43 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -29.83 364.11 -9.32 -39.15 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.73 Total: 10.41 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -4.96 Total: -25.40 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.71 Total: -32.18 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.57 Total: -16.50 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.25 Total: 19.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.83 -9.32 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550081620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.732 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds