Wall clock time and date at job start Tue Mar 31 2020 14:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 C 1.38261 * 119.94373 * 89.99555 * 3 2 1 5 5 C 1.38153 * 120.05268 * 180.02562 * 4 3 2 6 6 C 1.38724 * 119.94641 * 0.02562 * 5 4 3 7 7 O 1.35900 * 120.05626 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99895 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47118 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99954 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99901 * 179.97438 * 9 8 7 12 12 C 1.39131 * 119.99596 * 185.72517 * 11 9 8 13 13 C 1.38643 * 120.29102 * 19.23887 * 12 11 9 14 14 C 1.38218 * 120.03790 * 180.25521 * 13 12 11 15 15 C 1.38869 * 120.61130 * 359.74772 * 14 13 12 16 16 C 1.36452 * 120.58138 * 359.97438 * 15 14 13 17 17 C 1.40734 * 119.94318 * 0.02562 * 16 15 14 18 18 C 1.41075 * 120.30396 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00290 * 206.47144 * 18 17 16 20 20 C 1.39960 * 119.99628 * 26.47377 * 18 17 16 21 21 N 1.30856 * 120.00076 * 201.35880 * 20 18 17 22 22 Si 1.86801 * 120.00227 * 21.35675 * 20 18 17 23 23 H 1.48501 * 109.47328 * 270.00467 * 22 20 18 24 24 H 1.48502 * 109.46755 * 29.99960 * 22 20 18 25 25 H 1.48496 * 109.47355 * 149.99993 * 22 20 18 26 26 C 1.38735 * 119.88523 * 0.27873 * 6 5 4 27 27 C 1.38141 * 119.94684 * 359.46358 * 26 6 5 28 28 H 1.09000 * 109.47342 * 60.00533 * 1 2 3 29 29 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47530 * 300.00282 * 1 2 3 31 31 H 1.08996 * 109.47530 * 239.99717 * 2 1 3 32 32 H 1.09000 * 109.47342 * 119.99466 * 2 1 3 33 33 H 1.07996 * 119.97765 * 0.02572 * 4 3 2 34 34 H 1.08001 * 120.02077 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47747 * 59.99485 * 8 7 6 36 36 H 1.09004 * 109.47161 * 300.00094 * 8 7 6 37 37 H 0.96996 * 120.00122 * 5.72752 * 11 9 8 38 38 H 1.08002 * 119.97637 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.69243 * 179.76358 * 14 13 12 40 40 H 1.08004 * 119.70407 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.02954 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99239 * 354.93959 * 21 20 18 43 43 H 1.08006 * 120.02523 * 179.72651 * 26 6 5 44 44 H 1.07997 * 119.97401 * 180.23304 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0716 1.1981 5 6 2.7222 3.3743 1.2007 6 6 2.9529 4.0296 0.0000 7 8 3.4058 5.3109 -0.0001 8 6 3.6205 5.9231 -1.2733 9 6 4.1193 7.3313 -1.0759 10 8 4.2751 7.7680 0.0448 11 7 4.3922 8.1056 -2.1448 12 6 4.9645 9.3612 -1.9663 13 6 5.6157 9.6709 -0.7822 14 6 6.1777 10.9217 -0.6083 15 6 6.1023 11.8767 -1.6136 16 6 5.4723 11.5968 -2.7912 17 6 4.8917 10.3309 -2.9937 18 6 4.2381 10.0336 -4.2081 19 1 3.4553 9.2900 -4.2320 20 6 4.6041 10.7024 -5.3818 21 7 3.7710 10.7595 -6.3892 22 14 6.2819 11.5135 -5.5101 23 1 6.1910 12.9171 -5.0338 24 1 7.2569 10.7690 -4.6732 25 1 6.7317 11.4992 -6.9253 26 6 2.7153 3.3766 -1.2008 27 6 2.2605 2.0722 -1.1981 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0822 1.5611 2.1326 34 1 2.9013 3.8822 2.1368 35 1 2.6832 5.9438 -1.8293 36 1 4.3613 5.3505 -1.8315 37 1 4.1897 7.7875 -3.0385 38 1 5.6799 8.9360 0.0066 39 1 6.6803 11.1583 0.3178 40 1 6.5470 12.8493 -1.4623 41 1 5.4193 12.3461 -3.5672 42 1 2.9303 10.2771 -6.3512 43 1 2.8899 3.8862 -2.1369 44 1 2.0790 1.5621 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550081620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:43 Heat of formation + Delta-G solvation = -48.508233 kcal Electronic energy + Delta-G solvation = -25823.648708 eV Core-core repulsion = 22091.022329 eV Total energy + Delta-G solvation = -3732.626378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73857 -40.94844 -39.34620 -38.54050 -35.74495 -35.61962 -34.47004 -32.13886 -32.11587 -31.33085 -29.82622 -28.63035 -26.59542 -24.56731 -24.22325 -23.64641 -22.38149 -21.70997 -21.26943 -20.14295 -19.39652 -18.75380 -17.85541 -17.52140 -17.04521 -16.56229 -16.45345 -16.08328 -15.81578 -15.42079 -15.37059 -15.10467 -14.75981 -14.54971 -14.41978 -14.29708 -14.14121 -13.95961 -13.71544 -13.55450 -13.32720 -12.91715 -12.70303 -12.60394 -12.27701 -12.05750 -11.90656 -11.85319 -11.69998 -11.63956 -11.49322 -11.26347 -10.94582 -10.53242 -9.98468 -9.66244 -9.30947 -9.08234 -8.85375 -6.50734 0.35982 0.40960 0.60796 0.82632 1.41083 1.50287 1.51862 1.63896 1.80200 2.18875 2.63642 2.67532 2.75526 3.48184 3.49572 3.82174 3.88408 3.91079 3.99023 4.00534 4.26774 4.33776 4.40869 4.44294 4.50346 4.57750 4.64242 4.66294 4.80854 4.85588 4.96981 5.01632 5.11813 5.16333 5.19357 5.30888 5.37912 5.42523 5.42596 5.53043 5.62314 5.69722 5.79742 5.88331 5.99737 6.02370 6.31045 6.37339 6.54571 6.62581 6.82074 7.13982 7.99569 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.002429 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.409281 B =11522.507450 C =12676.133687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.080 4.080 5 C -0.164 4.164 6 C 0.100 3.900 7 O -0.318 6.318 8 C 0.054 3.946 9 C 0.497 3.503 10 O -0.554 6.554 11 N -0.630 5.630 12 C 0.016 3.984 13 C -0.111 4.111 14 C -0.223 4.223 15 C -0.090 4.090 16 C -0.246 4.246 17 C 0.064 3.936 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.020 3.980 21 N -0.834 5.834 22 Si 1.100 2.900 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.282 1.282 26 C -0.212 4.212 27 C -0.082 4.082 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.417 0.583 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.281 0.719 43 H 0.144 0.856 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -19.225 6.823 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.183 4.183 6 C 0.055 3.945 7 O -0.231 6.231 8 C -0.024 4.024 9 C 0.285 3.715 10 O -0.433 6.433 11 N -0.274 5.274 12 C -0.078 4.078 13 C -0.131 4.131 14 C -0.243 4.243 15 C -0.108 4.108 16 C -0.266 4.266 17 C 0.060 3.940 18 C -0.569 4.569 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.458 5.458 22 Si 0.922 3.078 23 H -0.187 1.187 24 H -0.189 1.189 25 H -0.209 1.209 26 C -0.231 4.231 27 C -0.100 4.100 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.254 0.746 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.161 0.839 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.817 -17.974 6.701 19.269 hybrid contribution -1.506 -0.720 0.248 1.687 sum -3.323 -18.694 6.950 20.219 Atomic orbital electron populations 1.21762 0.94566 1.02321 1.01787 1.20518 0.96189 0.91008 1.03788 1.20170 1.01546 0.97972 0.92725 1.21100 0.96814 0.92669 0.99158 1.20646 1.05389 0.96079 0.96194 1.19355 0.96354 0.83133 0.95647 1.86099 1.81213 1.25514 1.30315 1.22443 1.04250 0.90018 0.85737 1.20713 0.78364 0.87978 0.84421 1.90592 1.52923 1.74493 1.25337 1.42766 1.59382 1.15295 1.09927 1.17928 1.05490 0.86027 0.98382 1.21359 0.96978 0.98151 0.96600 1.20771 1.08560 0.94440 1.00481 1.20755 0.97847 0.99203 0.93036 1.20926 1.09423 0.96555 0.99674 1.17686 0.92496 0.90741 0.93047 1.20355 1.19134 1.23441 0.93997 0.91720 1.28087 1.05793 0.94114 0.91625 1.70632 1.09175 1.31059 1.34901 0.83244 0.71202 0.77440 0.75885 1.18687 1.18926 1.20915 1.21509 1.07070 0.97565 0.96924 1.21143 0.96591 0.93285 0.98954 0.93107 0.91156 0.93051 0.90132 0.90095 0.83286 0.85480 0.86593 0.86028 0.74586 0.85502 0.85822 0.85219 0.87106 0.90770 0.83872 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.08 -0.85 6.06 29.85 0.18 -0.67 16 3 C -0.12 -2.02 5.13 -19.85 -0.10 -2.13 16 4 C -0.08 -1.43 9.69 22.26 0.22 -1.22 16 5 C -0.16 -3.86 9.99 22.37 0.22 -3.63 16 6 C 0.10 2.58 6.69 22.51 0.15 2.73 16 7 O -0.32 -9.91 9.67 -73.39 -0.71 -10.62 16 8 C 0.05 1.43 5.22 71.23 0.37 1.80 16 9 C 0.50 18.53 7.75 87.66 0.68 19.20 16 10 O -0.55 -25.15 13.38 16.00 0.21 -24.93 16 11 N -0.63 -24.73 5.18 -302.27 -1.57 -26.30 16 12 C 0.02 0.76 6.54 38.88 0.25 1.02 16 13 C -0.11 -5.08 8.78 22.36 0.20 -4.89 16 14 C -0.22 -9.39 10.04 22.42 0.22 -9.17 16 15 C -0.09 -3.75 9.96 22.00 0.22 -3.53 16 16 C -0.25 -11.45 7.33 22.46 0.16 -11.28 16 17 C 0.06 3.17 5.18 -21.18 -0.11 3.06 16 18 C -0.54 -27.14 8.75 23.38 0.20 -26.94 16 19 H 0.06 3.26 7.20 -2.91 -0.02 3.24 16 20 C 0.02 0.97 5.38 85.26 0.46 1.43 16 21 N -0.83 -42.86 13.66 21.83 0.30 -42.56 16 22 Si 1.10 46.34 25.01 68.60 1.72 48.05 16 23 H -0.26 -10.32 6.37 99.48 0.63 -9.69 16 24 H -0.26 -11.11 7.10 99.48 0.71 -10.41 16 25 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 26 C -0.21 -4.37 9.04 22.37 0.20 -4.17 16 27 C -0.08 -1.40 9.69 22.25 0.22 -1.19 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.12 2.49 7.65 -2.39 -0.02 2.47 16 36 H 0.12 2.50 7.67 -2.38 -0.02 2.48 16 37 H 0.42 14.51 7.33 -92.71 -0.68 13.83 16 38 H 0.13 5.93 5.39 -2.91 -0.02 5.91 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.11 5.04 4.35 -2.91 -0.01 5.03 16 42 H 0.28 14.16 8.73 -92.71 -0.81 13.35 16 43 H 0.14 2.40 6.30 -2.91 -0.02 2.38 16 44 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -65.00 364.11 4.65 -60.34 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.24 Total: 36.40 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.46 Total: -40.38 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.27 Total: -68.85 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.50 Total: -35.55 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.72 Total: 48.05 kcal Total: -65.00 4.65 -60.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550081620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.832 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds