Wall clock time and date at job start Tue Mar 31 2020 13:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38288 * 119.96972 * 2 1 4 4 C 1.38251 * 120.10710 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05592 * 359.76574 * 4 3 2 6 6 C 1.50695 * 120.02568 * 180.25388 * 5 4 3 7 7 C 1.38709 * 119.94196 * 0.52781 * 5 4 3 8 8 O 1.35903 * 120.05381 * 179.72226 * 7 5 4 9 9 C 1.42895 * 116.99974 * 179.72911 * 8 7 5 10 10 C 1.50701 * 109.47176 * 179.97438 * 9 8 7 11 11 O 1.21288 * 119.99843 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00206 * 179.97438 * 10 9 8 13 13 C 1.39124 * 120.00238 * 184.92058 * 12 10 9 14 14 C 1.38648 * 120.28450 * 331.07282 * 13 12 10 15 15 C 1.38222 * 120.03444 * 180.25500 * 14 13 12 16 16 C 1.38868 * 120.61523 * 359.74296 * 15 14 13 17 17 C 1.36463 * 120.57707 * 359.97438 * 16 15 14 18 18 C 1.40735 * 119.94377 * 0.02562 * 17 16 15 19 19 C 1.41070 * 120.30234 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00144 * 205.07764 * 19 18 17 21 21 C 1.39957 * 119.99928 * 25.07528 * 19 18 17 22 22 N 1.30859 * 120.00087 * 17.59364 * 21 19 18 23 23 Si 1.86806 * 120.00080 * 197.59044 * 21 19 18 24 24 H 1.48498 * 109.47009 * 265.01870 * 23 21 19 25 25 H 1.48498 * 109.46850 * 25.02199 * 23 21 19 26 26 H 1.48501 * 109.46939 * 145.01872 * 23 21 19 27 27 C 1.38119 * 119.97243 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46817 * 269.98186 * 1 2 3 29 29 H 1.09001 * 109.47031 * 29.98069 * 1 2 3 30 30 H 1.08993 * 109.46869 * 149.97972 * 1 2 3 31 31 H 1.07999 * 119.95040 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.96785 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47067 * 270.27619 * 6 5 4 34 34 H 1.09000 * 109.47258 * 30.27767 * 6 5 4 35 35 H 1.09006 * 109.46951 * 150.27568 * 6 5 4 36 36 H 1.09001 * 109.47254 * 60.00241 * 9 8 7 37 37 H 1.09000 * 109.47354 * 299.99901 * 9 8 7 38 38 H 0.97006 * 119.99904 * 4.91693 * 12 10 9 39 39 H 1.08001 * 119.98390 * 359.97074 * 14 13 12 40 40 H 1.08001 * 119.69310 * 179.76062 * 15 14 13 41 41 H 1.07999 * 119.70812 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.02847 * 180.02562 * 17 16 15 43 43 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.02876 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0071 0.0060 6 6 5.7822 0.0115 0.0123 7 6 3.5846 -1.1958 -0.0002 8 8 4.2658 -2.3718 -0.0006 9 6 3.4893 -3.5713 -0.0011 10 6 4.4090 -4.7652 -0.0021 11 8 5.6112 -4.6045 -0.0019 12 7 3.8957 -6.0113 -0.0022 13 6 4.7407 -7.1118 0.1003 14 6 6.0393 -7.0433 -0.3807 15 6 6.8728 -8.1415 -0.2810 16 6 6.4246 -9.3187 0.3034 17 6 5.1532 -9.4119 0.7903 18 6 4.2843 -8.3083 0.7012 19 6 2.9682 -8.3964 1.2015 20 1 2.1947 -7.7575 0.8018 21 6 2.6650 -9.3119 2.2158 22 7 3.6256 -9.8329 2.9356 23 14 0.8889 -9.7900 2.5422 24 1 0.3399 -8.9418 3.6304 25 1 0.0880 -9.5912 1.3076 26 1 0.8270 -11.2172 2.9479 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6566 2.1325 -0.0004 32 1 4.1176 2.1382 0.0010 33 1 6.1498 0.0154 -1.0138 34 1 6.1407 0.9011 0.5301 35 1 6.1459 -0.8789 0.5253 36 1 2.8606 -3.5968 -0.8911 37 1 2.8604 -3.5975 0.8889 38 1 2.9370 -6.1410 -0.0736 39 1 6.3984 -6.1330 -0.8376 40 1 7.8821 -8.0833 -0.6610 41 1 7.0884 -10.1677 0.3741 42 1 4.8139 -10.3317 1.2435 43 1 3.4155 -10.4677 3.6384 44 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550085500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:42 Heat of formation + Delta-G solvation = -32.754886 kcal Electronic energy + Delta-G solvation = -26255.111181 eV Core-core repulsion = 22523.167920 eV Total energy + Delta-G solvation = -3731.943262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51934 -39.49555 -37.77667 -36.90045 -33.90081 -33.85916 -33.72227 -30.42367 -29.72330 -29.32492 -29.32205 -27.45304 -25.25558 -24.84249 -22.79797 -21.63041 -21.18085 -20.73303 -19.46350 -17.69823 -17.48923 -17.05297 -16.27099 -16.08967 -15.76740 -15.59912 -15.12109 -14.45250 -14.32347 -14.24932 -13.88259 -13.70807 -13.29881 -13.04466 -12.98333 -12.88844 -12.70388 -12.54492 -12.29121 -11.94598 -11.87727 -11.74515 -11.41221 -11.39720 -11.18102 -11.07510 -10.96348 -10.91937 -10.58473 -10.10898 -9.77510 -9.36782 -9.27221 -8.83328 -8.80111 -8.13105 -7.45303 -7.02050 -6.81852 -4.42073 1.17527 1.33453 2.54149 2.79718 2.80121 2.99304 3.01939 3.17059 3.35239 3.59314 3.82163 4.06091 4.55310 4.56909 4.66522 4.85380 4.92373 5.04201 5.10612 5.13940 5.15846 5.38211 5.42149 5.50294 5.58407 5.59563 5.60868 5.72477 5.86470 6.18371 6.22847 6.32605 6.39108 6.45780 6.48828 6.58204 6.68300 6.83898 7.00211 7.11331 7.23537 7.32872 7.56629 7.66951 7.91897 8.02330 8.07905 8.33115 8.49880 8.74115 8.74546 8.94484 10.08107 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003077 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.144277 B = 9097.941884 C =10913.141748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.136 3.864 8 O -0.283 6.283 9 C 0.043 3.957 10 C 0.499 3.501 11 O -0.516 6.516 12 N -0.630 5.630 13 C 0.011 3.989 14 C -0.092 4.092 15 C -0.229 4.229 16 C -0.110 4.110 17 C -0.155 4.155 18 C 0.105 3.895 19 C -0.467 4.467 20 H 0.074 0.926 21 C 0.079 3.921 22 N -0.788 5.788 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.260 1.260 26 H -0.274 1.274 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.282 0.718 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 15.693 -4.159 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.099 4.099 5 C -0.120 4.120 6 C -0.164 4.164 7 C 0.090 3.910 8 O -0.195 6.195 9 C -0.036 4.036 10 C 0.284 3.716 11 O -0.393 6.393 12 N -0.273 5.273 13 C -0.083 4.083 14 C -0.112 4.112 15 C -0.248 4.248 16 C -0.129 4.129 17 C -0.175 4.175 18 C 0.102 3.898 19 C -0.497 4.497 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.413 5.413 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.184 1.184 26 H -0.199 1.199 27 C -0.228 4.228 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.238 0.762 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.763 15.638 -3.935 17.124 hybrid contribution -1.583 -0.459 0.378 1.691 sum -7.346 15.179 -3.557 17.234 Atomic orbital electron populations 1.20808 0.91085 1.02812 1.02466 1.19669 0.95934 0.92495 0.97345 1.20885 0.94077 0.97377 1.05405 1.20846 0.93952 0.96706 0.98411 1.19281 0.96754 0.90168 1.05827 1.20627 0.90349 1.02988 1.02398 1.18899 0.90303 0.85755 0.96060 1.86165 1.34051 1.11195 1.88075 1.22507 0.94039 0.83539 1.03499 1.19848 0.89057 0.83730 0.78928 1.90662 1.14889 1.85278 1.48421 1.42630 1.10460 1.03859 1.70398 1.17650 0.91608 0.86992 1.12003 1.20885 0.92988 0.98125 0.99165 1.20335 0.98972 0.94853 1.10688 1.20489 0.96264 0.96508 0.99611 1.20874 0.93668 0.98820 1.04182 1.17370 0.93766 0.89322 0.89366 1.19231 0.94739 1.18488 1.17215 0.90809 1.25845 0.99304 0.94368 0.94468 1.69837 1.34233 1.22670 1.14551 0.86336 0.82439 0.78695 0.79505 1.19616 1.18409 1.19935 1.21147 0.92785 0.99094 1.09726 0.90993 0.91460 0.91455 0.86114 0.85486 0.91414 0.91907 0.90583 0.89404 0.89067 0.76245 0.86295 0.89152 0.89362 0.86158 0.90717 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.05 -0.56 5.88 -104.64 -0.62 -1.18 16 3 C -0.16 -1.58 9.70 -39.56 -0.38 -1.96 16 4 C -0.08 -0.85 9.70 -39.60 -0.38 -1.23 16 5 C -0.12 -1.52 5.89 -104.48 -0.62 -2.13 16 6 C -0.11 -1.26 9.79 36.00 0.35 -0.91 16 7 C 0.14 1.88 6.66 -39.22 -0.26 1.62 16 8 O -0.28 -4.54 8.71 -39.35 -0.34 -4.88 16 9 C 0.04 0.62 5.22 36.01 0.19 0.80 16 10 C 0.50 9.58 7.78 -10.99 -0.09 9.50 16 11 O -0.52 -11.94 13.57 -14.36 -0.19 -12.14 16 12 N -0.63 -12.49 5.10 -9.47 -0.05 -12.54 16 13 C 0.01 0.25 6.44 -83.17 -0.54 -0.28 16 14 C -0.09 -2.22 8.75 -39.44 -0.35 -2.57 16 15 C -0.23 -5.37 10.04 -39.35 -0.39 -5.76 16 16 C -0.11 -2.60 9.97 -39.99 -0.40 -3.00 16 17 C -0.16 -3.96 8.64 -39.28 -0.34 -4.29 16 18 C 0.11 2.68 5.58 -106.65 -0.60 2.08 16 19 C -0.47 -11.34 8.65 -37.87 -0.33 -11.67 16 20 H 0.07 1.62 6.69 -52.49 -0.35 1.27 16 21 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 22 N -0.79 -19.59 10.98 55.55 0.61 -18.98 16 23 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 C -0.21 -2.47 8.69 -39.44 -0.34 -2.81 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 36 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 37 H 0.09 1.12 7.66 -51.93 -0.40 0.73 16 38 H 0.40 6.78 7.34 -40.82 -0.30 6.48 16 39 H 0.12 2.88 5.74 -52.49 -0.30 2.58 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.12 3.12 6.19 -52.48 -0.32 2.79 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -30.48 367.97 -10.00 -40.48 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.73 Total: 12.66 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -4.81 Total: -22.54 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.56 Total: -31.53 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.54 Total: -17.02 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.48 -10.00 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550085500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.726 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds