Wall clock time and date at job start Tue Mar 31 2020 13:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38288 * 119.96972 * 2 1 4 4 C 1.38251 * 120.10710 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05592 * 359.76574 * 4 3 2 6 6 C 1.50695 * 120.02568 * 180.25388 * 5 4 3 7 7 C 1.38709 * 119.94196 * 0.52781 * 5 4 3 8 8 O 1.35903 * 120.05381 * 179.72226 * 7 5 4 9 9 C 1.42895 * 116.99974 * 179.72911 * 8 7 5 10 10 C 1.50701 * 109.47176 * 179.97438 * 9 8 7 11 11 O 1.21288 * 119.99843 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00206 * 179.97438 * 10 9 8 13 13 C 1.39124 * 120.00238 * 184.92058 * 12 10 9 14 14 C 1.38648 * 120.28450 * 331.07282 * 13 12 10 15 15 C 1.38222 * 120.03444 * 180.25500 * 14 13 12 16 16 C 1.38868 * 120.61523 * 359.74296 * 15 14 13 17 17 C 1.36463 * 120.57707 * 359.97438 * 16 15 14 18 18 C 1.40735 * 119.94377 * 0.02562 * 17 16 15 19 19 C 1.41070 * 120.30234 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00144 * 205.07764 * 19 18 17 21 21 C 1.39957 * 119.99928 * 25.07528 * 19 18 17 22 22 N 1.30859 * 120.00087 * 17.59364 * 21 19 18 23 23 Si 1.86806 * 120.00080 * 197.59044 * 21 19 18 24 24 H 1.48498 * 109.47009 * 265.01870 * 23 21 19 25 25 H 1.48498 * 109.46850 * 25.02199 * 23 21 19 26 26 H 1.48501 * 109.46939 * 145.01872 * 23 21 19 27 27 C 1.38119 * 119.97243 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46817 * 269.98186 * 1 2 3 29 29 H 1.09001 * 109.47031 * 29.98069 * 1 2 3 30 30 H 1.08993 * 109.46869 * 149.97972 * 1 2 3 31 31 H 1.07999 * 119.95040 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.96785 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47067 * 270.27619 * 6 5 4 34 34 H 1.09000 * 109.47258 * 30.27767 * 6 5 4 35 35 H 1.09006 * 109.46951 * 150.27568 * 6 5 4 36 36 H 1.09001 * 109.47254 * 60.00241 * 9 8 7 37 37 H 1.09000 * 109.47354 * 299.99901 * 9 8 7 38 38 H 0.97006 * 119.99904 * 4.91693 * 12 10 9 39 39 H 1.08001 * 119.98390 * 359.97074 * 14 13 12 40 40 H 1.08001 * 119.69310 * 179.76062 * 15 14 13 41 41 H 1.07999 * 119.70812 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.02847 * 180.02562 * 17 16 15 43 43 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.02876 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0071 0.0060 6 6 5.7822 0.0115 0.0123 7 6 3.5846 -1.1958 -0.0002 8 8 4.2658 -2.3718 -0.0006 9 6 3.4893 -3.5713 -0.0011 10 6 4.4090 -4.7652 -0.0021 11 8 5.6112 -4.6045 -0.0019 12 7 3.8957 -6.0113 -0.0022 13 6 4.7407 -7.1118 0.1003 14 6 6.0393 -7.0433 -0.3807 15 6 6.8728 -8.1415 -0.2810 16 6 6.4246 -9.3187 0.3034 17 6 5.1532 -9.4119 0.7903 18 6 4.2843 -8.3083 0.7012 19 6 2.9682 -8.3964 1.2015 20 1 2.1947 -7.7575 0.8018 21 6 2.6650 -9.3119 2.2158 22 7 3.6256 -9.8329 2.9356 23 14 0.8889 -9.7900 2.5422 24 1 0.3399 -8.9418 3.6304 25 1 0.0880 -9.5912 1.3076 26 1 0.8270 -11.2172 2.9479 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6566 2.1325 -0.0004 32 1 4.1176 2.1382 0.0010 33 1 6.1498 0.0154 -1.0138 34 1 6.1407 0.9011 0.5301 35 1 6.1459 -0.8789 0.5253 36 1 2.8606 -3.5968 -0.8911 37 1 2.8604 -3.5975 0.8889 38 1 2.9370 -6.1410 -0.0736 39 1 6.3984 -6.1330 -0.8376 40 1 7.8821 -8.0833 -0.6610 41 1 7.0884 -10.1677 0.3741 42 1 4.8139 -10.3317 1.2435 43 1 3.4155 -10.4677 3.6384 44 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550085500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:41 Heat of formation + Delta-G solvation = -47.616971 kcal Electronic energy + Delta-G solvation = -26255.755650 eV Core-core repulsion = 22523.167920 eV Total energy + Delta-G solvation = -3732.587730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65927 -40.90841 -39.15241 -38.29999 -35.56997 -35.53843 -34.70395 -31.61601 -31.43779 -30.71998 -30.07859 -28.91676 -27.05249 -25.64825 -23.99056 -23.20793 -22.42786 -22.04563 -21.07819 -19.26705 -18.77572 -18.57014 -17.56599 -17.44459 -17.05553 -16.69644 -16.42765 -16.03140 -15.74681 -15.36196 -15.04334 -14.86540 -14.54431 -14.43299 -14.17711 -14.07637 -13.88084 -13.70713 -13.59739 -13.42200 -13.20034 -12.84189 -12.75701 -12.69283 -12.67125 -12.20578 -12.18832 -11.93873 -11.84457 -11.76607 -11.56292 -11.10105 -11.04230 -10.50744 -9.65391 -9.35897 -9.02916 -8.83985 -8.60959 -6.28779 0.35432 0.47739 0.79925 1.03480 1.42619 1.52290 1.54739 1.58315 1.76916 2.20969 2.72711 2.76320 2.79972 3.57015 3.70499 3.81320 3.90675 3.97070 4.06533 4.13937 4.28779 4.36338 4.51670 4.61430 4.63149 4.75226 4.75967 4.77981 4.79228 4.86511 4.90245 5.03940 5.17957 5.20294 5.29578 5.37085 5.39126 5.41289 5.53606 5.66556 5.73916 5.81339 5.88791 6.10143 6.17749 6.21302 6.38087 6.61464 6.68220 6.91686 6.97292 7.30202 8.32991 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003077 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.144277 B = 9097.941884 C =10913.141748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.143 4.143 6 C -0.103 4.103 7 C 0.106 3.894 8 O -0.314 6.314 9 C 0.054 3.946 10 C 0.496 3.504 11 O -0.561 6.561 12 N -0.626 5.626 13 C 0.005 3.995 14 C -0.108 4.108 15 C -0.237 4.237 16 C -0.114 4.114 17 C -0.180 4.180 18 C 0.079 3.921 19 C -0.487 4.487 20 H 0.092 0.908 21 C 0.036 3.964 22 N -0.824 5.824 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.250 1.250 26 H -0.273 1.273 27 C -0.217 4.217 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.288 0.712 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 17.456 -4.244 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.176 4.176 4 C -0.099 4.099 5 C -0.144 4.144 6 C -0.160 4.160 7 C 0.061 3.939 8 O -0.227 6.227 9 C -0.024 4.024 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.270 5.270 13 C -0.089 4.089 14 C -0.128 4.128 15 C -0.256 4.256 16 C -0.133 4.133 17 C -0.200 4.200 18 C 0.075 3.925 19 C -0.516 4.516 20 H 0.110 0.890 21 C -0.180 4.180 22 N -0.450 5.450 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.173 1.173 26 H -0.198 1.198 27 C -0.235 4.235 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.254 0.746 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.684 17.421 -4.033 19.879 hybrid contribution -0.646 -0.905 0.406 1.184 sum -9.329 16.516 -3.626 19.312 Atomic orbital electron populations 1.20866 0.88967 1.03924 1.03267 1.20078 0.97545 0.92145 0.96222 1.21294 0.94003 0.98479 1.03831 1.21164 0.94553 0.96790 0.97373 1.19560 0.97056 0.90865 1.06914 1.20579 0.90555 1.02549 1.02305 1.19197 0.91376 0.85140 0.98173 1.86107 1.35469 1.12156 1.88968 1.22451 0.92565 0.81202 1.06179 1.20720 0.89217 0.84591 0.77065 1.90633 1.17232 1.85972 1.50214 1.42585 1.10812 1.03366 1.70252 1.17784 0.92077 0.87893 1.11117 1.21042 0.93665 0.98283 0.99847 1.20618 0.99947 0.94575 1.10497 1.20719 0.96123 0.97399 0.99068 1.20936 0.94774 0.98787 1.05540 1.17722 0.94725 0.89839 0.90192 1.19612 0.94811 1.19562 1.17600 0.88991 1.26786 1.03748 0.93681 0.93751 1.69911 1.36696 1.23176 1.15173 0.85169 0.76639 0.78145 0.79663 1.18973 1.17298 1.19830 1.21372 0.92005 1.00493 1.09635 0.90206 0.89893 0.90904 0.83337 0.83017 0.91399 0.89692 0.93557 0.85952 0.86748 0.74574 0.86744 0.87056 0.87094 0.87327 0.90115 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.06 -1.08 5.88 -19.88 -0.12 -1.19 16 3 C -0.16 -2.64 9.70 22.28 0.22 -2.43 16 4 C -0.08 -1.52 9.70 22.26 0.22 -1.30 16 5 C -0.14 -3.55 5.89 -19.77 -0.12 -3.66 16 6 C -0.10 -2.48 9.79 71.23 0.70 -1.78 16 7 C 0.11 2.89 6.66 22.51 0.15 3.04 16 8 O -0.31 -10.17 8.71 -73.42 -0.64 -10.81 16 9 C 0.05 1.50 5.22 71.24 0.37 1.87 16 10 C 0.50 19.24 7.78 87.66 0.68 19.92 16 11 O -0.56 -26.91 13.57 15.98 0.22 -26.69 16 12 N -0.63 -24.87 5.10 -302.27 -1.54 -26.41 16 13 C 0.01 0.27 6.44 38.88 0.25 0.52 16 14 C -0.11 -5.39 8.75 22.36 0.20 -5.19 16 15 C -0.24 -11.29 10.04 22.42 0.22 -11.06 16 16 C -0.11 -5.51 9.97 22.01 0.22 -5.29 16 17 C -0.18 -9.43 8.64 22.47 0.19 -9.24 16 18 C 0.08 4.09 5.58 -21.18 -0.12 3.98 16 19 C -0.49 -23.63 8.65 23.38 0.20 -23.42 16 20 H 0.09 3.95 6.69 -2.91 -0.02 3.93 16 21 C 0.04 1.68 5.14 85.25 0.44 2.12 16 22 N -0.82 -41.47 10.98 21.83 0.24 -41.23 16 23 Si 0.98 34.91 29.60 68.60 2.03 36.94 16 24 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 25 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 26 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 27 C -0.22 -4.71 8.69 22.36 0.19 -4.52 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.72 8.08 -2.39 -0.02 0.71 16 30 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.05 1.36 7.53 -2.38 -0.02 1.34 16 36 H 0.12 2.51 7.66 -2.39 -0.02 2.49 16 37 H 0.11 2.62 7.66 -2.39 -0.02 2.60 16 38 H 0.42 13.70 7.34 -92.70 -0.68 13.02 16 39 H 0.11 5.76 5.74 -2.91 -0.02 5.75 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.11 5.83 6.19 -2.91 -0.02 5.82 16 43 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 44 H 0.14 2.53 6.30 -2.91 -0.02 2.52 16 Total: -1.00 -68.59 367.97 5.27 -63.31 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: 0.35 Total: 43.17 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 4.61 Total: -38.28 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.30 Total: -67.65 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.42 Total: -37.50 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -68.59 5.27 -63.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550085500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.697 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds