Wall clock time and date at job start Tue Mar 31 2020 14:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47122 * 2 1 4 4 C 1.38169 * 120.03106 * 265.00316 * 3 2 1 5 5 C 1.38239 * 120.05610 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.11446 * 0.02562 * 5 4 3 7 7 C 1.38126 * 120.05367 * 0.02562 * 6 5 4 8 8 C 1.38712 * 120.02569 * 84.99914 * 3 2 1 9 9 O 1.35900 * 120.05605 * 0.04609 * 8 3 2 10 10 C 1.42901 * 116.99950 * 179.97438 * 9 8 3 11 11 C 1.50694 * 109.47147 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.39132 * 120.00314 * 175.81099 * 13 11 10 15 15 C 1.38639 * 120.27969 * 34.54736 * 14 13 11 16 16 C 1.38230 * 120.03136 * 180.02562 * 15 14 13 17 17 C 1.38864 * 120.61626 * 359.97349 * 16 15 14 18 18 C 1.36466 * 120.57265 * 0.02875 * 17 16 15 19 19 C 1.40737 * 119.94614 * 359.69220 * 18 17 16 20 20 C 1.41067 * 120.30031 * 180.29846 * 19 18 17 21 21 H 1.07997 * 120.00249 * 214.96611 * 20 19 18 22 22 C 1.39962 * 119.99984 * 34.96686 * 20 19 18 23 23 N 1.30847 * 119.99901 * 355.65628 * 22 20 19 24 24 Si 1.86799 * 119.99979 * 175.65370 * 22 20 19 25 25 H 1.48503 * 109.47289 * 60.00130 * 24 22 20 26 26 H 1.48500 * 109.47437 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47230 * 300.00325 * 24 22 20 28 28 H 1.09003 * 109.47272 * 59.99906 * 1 2 3 29 29 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46819 * 299.99834 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00629 * 2 1 3 32 32 H 1.08988 * 109.47005 * 120.00512 * 2 1 3 33 33 H 1.08001 * 119.96833 * 359.97222 * 4 3 2 34 34 H 1.07999 * 119.94639 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.97450 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.02821 * 179.72617 * 7 6 5 37 37 H 1.09003 * 109.47180 * 300.00251 * 10 9 8 38 38 H 1.09005 * 109.47089 * 59.99705 * 10 9 8 39 39 H 0.97006 * 119.99957 * 355.81475 * 13 11 10 40 40 H 1.08004 * 119.98846 * 0.02562 * 15 14 13 41 41 H 1.07997 * 119.68999 * 179.97438 * 16 15 14 42 42 H 1.07994 * 119.71429 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.02623 * 179.97438 * 18 17 16 44 44 H 0.97005 * 119.99711 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0380 -1.1917 5 6 2.8214 3.3415 -1.1923 6 6 2.9547 4.0308 -0.0010 7 6 2.6284 3.4180 1.1931 8 6 2.1650 2.1101 1.1964 9 8 1.8432 1.5049 2.3699 10 6 2.0053 2.2750 3.5627 11 6 1.6031 1.4453 4.7547 12 8 1.2153 0.3068 4.5982 13 7 1.6733 1.9688 5.9947 14 6 1.2204 1.2347 7.0864 15 6 1.3676 -0.1436 7.1116 16 6 0.9153 -0.8679 8.1986 17 6 0.3117 -0.2281 9.2731 18 6 0.1540 1.1275 9.2744 19 6 0.6110 1.8889 8.1826 20 6 0.4575 3.2912 8.1789 21 1 0.2579 3.8102 7.2531 22 6 0.5639 4.0100 9.3751 23 7 0.7208 3.3748 10.5083 24 14 0.4818 5.8761 9.3539 25 1 -0.8226 6.3079 8.7908 26 1 0.6191 6.3934 10.7391 27 1 1.5844 6.4105 8.5150 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.2583 1.5016 -2.1234 34 1 3.0775 3.8224 -2.1248 35 1 3.3142 5.0493 -0.0041 36 1 2.7368 3.9552 2.1237 37 1 3.0488 2.5734 3.6636 38 1 1.3767 3.1640 3.5095 39 1 2.0395 2.8574 6.1260 40 1 1.8359 -0.6518 6.2816 41 1 1.0324 -1.9414 8.2123 42 1 -0.0368 -0.8083 10.1147 43 1 -0.3171 1.6160 10.1146 44 1 0.7949 3.8731 11.3373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559237103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:47 Heat of formation + Delta-G solvation = -33.632809 kcal Electronic energy + Delta-G solvation = -26406.441780 eV Core-core repulsion = 22674.460448 eV Total energy + Delta-G solvation = -3731.981332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52173 -39.47166 -37.68597 -36.86064 -34.20375 -33.85073 -33.66479 -30.40994 -29.91490 -29.60927 -28.89294 -27.34452 -25.20441 -23.96993 -22.72364 -21.55630 -21.14806 -20.73054 -19.45610 -18.15500 -17.53313 -16.96805 -16.27829 -16.10903 -15.85792 -15.71710 -15.15017 -14.54174 -14.35694 -14.25219 -13.94840 -13.79138 -13.47792 -13.19031 -12.95812 -12.76588 -12.52625 -12.36596 -12.10940 -11.88889 -11.78690 -11.61806 -11.28157 -11.21874 -11.17601 -10.96281 -10.84216 -10.74845 -10.52452 -10.15316 -9.84141 -9.37441 -9.24288 -8.98666 -8.89851 -8.22202 -7.35250 -7.02413 -6.67505 -4.50329 1.18005 1.31819 2.52570 2.77626 2.83566 3.00689 3.01592 3.15255 3.31290 3.62077 3.86225 4.04742 4.58696 4.61343 4.69169 4.85018 4.91242 5.09080 5.10497 5.15233 5.20258 5.34660 5.41607 5.47899 5.56588 5.59285 5.84617 5.93481 6.05484 6.22326 6.28970 6.30167 6.34879 6.43860 6.47157 6.53180 6.64845 6.88407 7.01120 7.13754 7.22489 7.30976 7.61137 7.66746 7.93097 8.04776 8.06348 8.33252 8.51376 8.74821 8.79352 8.94290 10.18117 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003098 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.760128 B = 9036.612937 C =10679.576181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.110 4.110 4 C -0.083 4.083 5 C -0.160 4.160 6 C -0.086 4.086 7 C -0.209 4.209 8 C 0.134 3.866 9 O -0.282 6.282 10 C 0.042 3.958 11 C 0.500 3.500 12 O -0.516 6.516 13 N -0.633 5.633 14 C 0.022 3.978 15 C -0.092 4.092 16 C -0.215 4.215 17 C -0.118 4.118 18 C -0.139 4.139 19 C 0.098 3.902 20 C -0.472 4.472 21 H 0.074 0.926 22 C 0.074 3.926 23 N -0.807 5.807 24 Si 0.914 3.086 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.266 1.266 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.404 0.596 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.131 0.869 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 2.820 -16.665 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.111 4.111 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.104 4.104 7 C -0.228 4.228 8 C 0.088 3.912 9 O -0.194 6.194 10 C -0.037 4.037 11 C 0.285 3.715 12 O -0.392 6.392 13 N -0.277 5.277 14 C -0.072 4.072 15 C -0.112 4.112 16 C -0.235 4.235 17 C -0.137 4.137 18 C -0.159 4.159 19 C 0.094 3.906 20 C -0.503 4.503 21 H 0.092 0.908 22 C -0.142 4.142 23 N -0.433 5.433 24 Si 0.738 3.262 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.191 1.191 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.240 0.760 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.812 1.871 -16.508 17.046 hybrid contribution 0.317 1.720 0.293 1.773 sum 4.129 3.592 -16.215 17.113 Atomic orbital electron populations 1.21693 0.94714 1.01715 1.01944 1.20381 0.96336 0.91879 1.02860 1.19304 1.04060 0.97433 0.90310 1.20869 0.97725 0.94814 0.96653 1.21010 1.03579 0.95171 0.98054 1.20912 0.98017 0.99525 0.91912 1.21303 1.06877 0.94863 0.99763 1.18933 0.95140 0.91318 0.85798 1.86173 1.81477 1.40042 1.11726 1.22518 1.02657 0.94772 0.83749 1.19908 0.79949 0.87957 0.83716 1.90699 1.45482 1.17799 1.85218 1.42670 1.60527 1.20032 1.04430 1.17787 1.07633 0.90822 0.90914 1.20671 1.00407 0.92636 0.97531 1.20388 1.09387 0.97594 0.96158 1.20562 1.00735 0.95374 0.97028 1.21189 1.02496 0.91821 1.00431 1.17448 0.88994 0.93420 0.90691 1.19256 1.44969 0.91680 0.94350 0.90786 1.25852 0.92493 1.00949 0.94926 1.69751 1.36857 1.37707 0.99006 0.86283 0.79718 0.81983 0.78176 1.19060 1.20344 1.19113 0.93163 0.92479 0.92118 0.91472 0.90216 0.85567 0.86097 0.85911 0.85301 0.89328 0.89074 0.76028 0.87197 0.89054 0.89214 0.85111 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 37.16 0.37 -1.28 16 2 C -0.08 -0.90 5.79 -27.88 -0.16 -1.06 16 3 C -0.11 -1.35 5.15 -104.47 -0.54 -1.88 16 4 C -0.08 -0.83 9.68 -39.61 -0.38 -1.22 16 5 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 6 C -0.09 -0.84 10.04 -39.61 -0.40 -1.24 16 7 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 8 C 0.13 1.79 6.66 -39.22 -0.26 1.53 16 9 O -0.28 -4.37 8.81 -39.33 -0.35 -4.72 16 10 C 0.04 0.58 5.22 36.00 0.19 0.77 16 11 C 0.50 9.38 7.75 -10.99 -0.09 9.30 16 12 O -0.52 -11.71 13.91 -14.36 -0.20 -11.91 16 13 N -0.63 -12.42 4.96 -9.48 -0.05 -12.47 16 14 C 0.02 0.51 6.34 -83.17 -0.53 -0.01 16 15 C -0.09 -2.21 8.69 -39.44 -0.34 -2.55 16 16 C -0.22 -4.98 10.04 -39.35 -0.39 -5.38 16 17 C -0.12 -2.77 9.97 -39.99 -0.40 -3.17 16 18 C -0.14 -3.54 8.61 -39.28 -0.34 -3.88 16 19 C 0.10 2.49 5.56 -106.66 -0.59 1.89 16 20 C -0.47 -11.52 8.22 -37.86 -0.31 -11.83 16 21 H 0.07 1.70 7.63 -52.49 -0.40 1.30 16 22 C 0.07 1.74 5.42 -17.33 -0.09 1.65 16 23 N -0.81 -19.88 10.62 55.55 0.59 -19.29 16 24 Si 0.91 17.62 29.56 -169.99 -5.03 12.60 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 27 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.08 1.08 7.69 -51.94 -0.40 0.68 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.24 6.30 -52.49 -0.33 0.90 16 37 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 38 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 39 H 0.40 6.89 8.10 -40.82 -0.33 6.56 16 40 H 0.11 2.61 6.20 -52.48 -0.33 2.28 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.13 3.42 6.16 -52.48 -0.32 3.09 16 44 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -29.75 369.73 -10.32 -40.07 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.84 Total: 13.11 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -5.02 Total: -22.97 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.54 Total: -31.75 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.55 Total: -16.63 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.75 -10.32 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559237103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.434 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds