Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47122 * 2 1 4 4 C 1.38169 * 120.03106 * 265.00316 * 3 2 1 5 5 C 1.38239 * 120.05610 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.11446 * 0.02562 * 5 4 3 7 7 C 1.38126 * 120.05367 * 0.02562 * 6 5 4 8 8 C 1.38712 * 120.02569 * 84.99914 * 3 2 1 9 9 O 1.35900 * 120.05605 * 0.04609 * 8 3 2 10 10 C 1.42901 * 116.99950 * 179.97438 * 9 8 3 11 11 C 1.50694 * 109.47147 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.39132 * 120.00314 * 175.81099 * 13 11 10 15 15 C 1.38639 * 120.27969 * 34.54736 * 14 13 11 16 16 C 1.38230 * 120.03136 * 180.02562 * 15 14 13 17 17 C 1.38864 * 120.61626 * 359.97349 * 16 15 14 18 18 C 1.36466 * 120.57265 * 0.02875 * 17 16 15 19 19 C 1.40737 * 119.94614 * 359.69220 * 18 17 16 20 20 C 1.41067 * 120.30031 * 180.29846 * 19 18 17 21 21 H 1.07997 * 120.00249 * 214.96611 * 20 19 18 22 22 C 1.39962 * 119.99984 * 34.96686 * 20 19 18 23 23 N 1.30847 * 119.99901 * 355.65628 * 22 20 19 24 24 Si 1.86799 * 119.99979 * 175.65370 * 22 20 19 25 25 H 1.48503 * 109.47289 * 60.00130 * 24 22 20 26 26 H 1.48500 * 109.47437 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47230 * 300.00325 * 24 22 20 28 28 H 1.09003 * 109.47272 * 59.99906 * 1 2 3 29 29 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46819 * 299.99834 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00629 * 2 1 3 32 32 H 1.08988 * 109.47005 * 120.00512 * 2 1 3 33 33 H 1.08001 * 119.96833 * 359.97222 * 4 3 2 34 34 H 1.07999 * 119.94639 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.97450 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.02821 * 179.72617 * 7 6 5 37 37 H 1.09003 * 109.47180 * 300.00251 * 10 9 8 38 38 H 1.09005 * 109.47089 * 59.99705 * 10 9 8 39 39 H 0.97006 * 119.99957 * 355.81475 * 13 11 10 40 40 H 1.08004 * 119.98846 * 0.02562 * 15 14 13 41 41 H 1.07997 * 119.68999 * 179.97438 * 16 15 14 42 42 H 1.07994 * 119.71429 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.02623 * 179.97438 * 18 17 16 44 44 H 0.97005 * 119.99711 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0380 -1.1917 5 6 2.8214 3.3415 -1.1923 6 6 2.9547 4.0308 -0.0010 7 6 2.6284 3.4180 1.1931 8 6 2.1650 2.1101 1.1964 9 8 1.8432 1.5049 2.3699 10 6 2.0053 2.2750 3.5627 11 6 1.6031 1.4453 4.7547 12 8 1.2153 0.3068 4.5982 13 7 1.6733 1.9688 5.9947 14 6 1.2204 1.2347 7.0864 15 6 1.3676 -0.1436 7.1116 16 6 0.9153 -0.8679 8.1986 17 6 0.3117 -0.2281 9.2731 18 6 0.1540 1.1275 9.2744 19 6 0.6110 1.8889 8.1826 20 6 0.4575 3.2912 8.1789 21 1 0.2579 3.8102 7.2531 22 6 0.5639 4.0100 9.3751 23 7 0.7208 3.3748 10.5083 24 14 0.4818 5.8761 9.3539 25 1 -0.8226 6.3079 8.7908 26 1 0.6191 6.3934 10.7391 27 1 1.5844 6.4105 8.5150 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.2583 1.5016 -2.1234 34 1 3.0775 3.8224 -2.1248 35 1 3.3142 5.0493 -0.0041 36 1 2.7368 3.9552 2.1237 37 1 3.0488 2.5734 3.6636 38 1 1.3767 3.1640 3.5095 39 1 2.0395 2.8574 6.1260 40 1 1.8359 -0.6518 6.2816 41 1 1.0324 -1.9414 8.2123 42 1 -0.0368 -0.8083 10.1147 43 1 -0.3171 1.6160 10.1146 44 1 0.7949 3.8731 11.3373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559237103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -47.683191 kcal Electronic energy + Delta-G solvation = -26407.051050 eV Core-core repulsion = 22674.460448 eV Total energy + Delta-G solvation = -3732.590602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63020 -40.86663 -39.11738 -38.15944 -35.53540 -35.48225 -35.05039 -31.58096 -31.39109 -30.94438 -30.08436 -28.69868 -27.00891 -24.83231 -23.92206 -23.09495 -22.41074 -21.99942 -21.04741 -19.28387 -19.11389 -18.52164 -17.60002 -17.43329 -17.04183 -16.72159 -16.59949 -16.00918 -15.67840 -15.36318 -15.32786 -14.82719 -14.65739 -14.52330 -14.37065 -14.19678 -13.88562 -13.63897 -13.59636 -13.05795 -12.97523 -12.82857 -12.76653 -12.70650 -12.40955 -12.14117 -12.07487 -11.98009 -11.75575 -11.63522 -11.56660 -11.08147 -10.97751 -10.58987 -9.76599 -9.25395 -9.09067 -8.83465 -8.45897 -6.37511 0.40183 0.50491 0.79312 1.05296 1.43869 1.53779 1.54922 1.57088 1.75519 2.24314 2.77957 2.81121 2.83475 3.59907 3.68478 3.80825 3.92118 3.98594 4.07448 4.18131 4.31478 4.38941 4.48601 4.51024 4.56645 4.60740 4.65577 4.73988 4.79577 4.98080 5.09446 5.09799 5.19114 5.19330 5.33032 5.36001 5.41392 5.45042 5.56425 5.63481 5.76849 5.83941 5.88348 6.12031 6.16373 6.24339 6.40033 6.62901 6.71099 6.94800 6.99244 7.30448 8.42104 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003098 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.760128 B = 9036.612937 C =10679.576181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.157 4.157 6 C -0.089 4.089 7 C -0.216 4.216 8 C 0.103 3.897 9 O -0.312 6.312 10 C 0.053 3.947 11 C 0.498 3.502 12 O -0.561 6.561 13 N -0.629 5.629 14 C 0.018 3.982 15 C -0.108 4.108 16 C -0.221 4.221 17 C -0.122 4.122 18 C -0.164 4.164 19 C 0.070 3.930 20 C -0.491 4.491 21 H 0.083 0.917 22 C 0.033 3.967 23 N -0.837 5.837 24 Si 0.987 3.013 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.252 1.252 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.417 0.583 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 5.140 -18.879 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.131 4.131 4 C -0.102 4.102 5 C -0.175 4.175 6 C -0.107 4.107 7 C -0.235 4.235 8 C 0.059 3.941 9 O -0.226 6.226 10 C -0.026 4.026 11 C 0.286 3.714 12 O -0.439 6.439 13 N -0.274 5.274 14 C -0.076 4.076 15 C -0.128 4.128 16 C -0.240 4.240 17 C -0.141 4.141 18 C -0.184 4.184 19 C 0.067 3.933 20 C -0.521 4.521 21 H 0.101 0.899 22 C -0.181 4.181 23 N -0.465 5.465 24 Si 0.808 3.192 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.176 1.176 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.254 0.746 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.747 4.205 -18.742 19.786 hybrid contribution 0.044 0.947 0.901 1.308 sum 4.791 5.152 -17.841 19.177 Atomic orbital electron populations 1.21653 0.94874 1.01873 1.01239 1.20349 0.96203 0.92201 1.02528 1.19536 1.04952 0.97621 0.90994 1.21181 0.96952 0.95398 0.96668 1.21424 1.02024 0.94797 0.99210 1.21300 0.97188 1.00715 0.91450 1.21545 1.06564 0.94109 1.01234 1.19237 0.97131 0.92587 0.85193 1.86118 1.82480 1.41298 1.12662 1.22459 1.04854 0.93748 0.81490 1.20762 0.78416 0.87747 0.84497 1.90671 1.47325 1.20045 1.85888 1.42638 1.60397 1.20310 1.04049 1.17913 1.06900 0.91137 0.91687 1.20833 1.01062 0.93096 0.97806 1.20687 1.08755 0.98866 0.95707 1.20789 1.00430 0.94990 0.97884 1.21224 1.03798 0.92786 1.00637 1.17789 0.89817 0.94378 0.91337 1.19508 1.45695 0.91577 0.95321 0.89890 1.26750 0.91462 1.05734 0.94120 1.69843 1.37161 1.39701 0.99747 0.85169 0.79998 0.75729 0.78327 1.18865 1.20122 1.17580 0.91495 0.91928 0.95014 0.89148 0.93086 0.83227 0.83233 0.83277 0.83872 0.86108 0.86559 0.74557 0.87510 0.86727 0.86908 0.86504 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.90 71.98 0.71 -2.52 16 2 C -0.08 -1.76 5.79 29.85 0.17 -1.59 16 3 C -0.13 -3.06 5.15 -19.77 -0.10 -3.16 16 4 C -0.08 -1.48 9.68 22.25 0.22 -1.26 16 5 C -0.16 -2.38 10.04 22.28 0.22 -2.16 16 6 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 7 C -0.22 -4.39 9.04 22.37 0.20 -4.19 16 8 C 0.10 2.68 6.66 22.51 0.15 2.83 16 9 O -0.31 -9.77 8.81 -73.38 -0.65 -10.42 16 10 C 0.05 1.41 5.22 71.23 0.37 1.79 16 11 C 0.50 18.91 7.75 87.66 0.68 19.58 16 12 O -0.56 -26.34 13.91 15.99 0.22 -26.12 16 13 N -0.63 -24.84 4.96 -302.29 -1.50 -26.34 16 14 C 0.02 0.87 6.34 38.87 0.25 1.11 16 15 C -0.11 -5.27 8.69 22.36 0.19 -5.08 16 16 C -0.22 -10.31 10.04 22.42 0.23 -10.09 16 17 C -0.12 -5.82 9.97 22.01 0.22 -5.61 16 18 C -0.16 -8.60 8.61 22.47 0.19 -8.40 16 19 C 0.07 3.66 5.56 -21.18 -0.12 3.54 16 20 C -0.49 -24.14 8.22 23.38 0.19 -23.95 16 21 H 0.08 3.79 7.63 -2.91 -0.02 3.77 16 22 C 0.03 1.53 5.42 85.26 0.46 1.99 16 23 N -0.84 -41.83 10.62 21.83 0.23 -41.60 16 24 Si 0.99 35.36 29.56 68.60 2.03 37.39 16 25 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 26 H -0.28 -9.72 7.11 99.48 0.71 -9.02 16 27 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 32 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.14 2.34 6.30 -2.91 -0.02 2.32 16 37 H 0.12 2.44 7.66 -2.39 -0.02 2.42 16 38 H 0.12 2.52 7.67 -2.38 -0.02 2.51 16 39 H 0.42 13.99 8.10 -92.70 -0.75 13.24 16 40 H 0.11 5.24 6.20 -2.91 -0.02 5.22 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.12 6.35 6.16 -2.91 -0.02 6.33 16 44 H 0.28 13.04 8.30 -92.70 -0.77 12.27 16 Total: -1.00 -67.20 369.73 5.08 -62.12 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: 0.27 Total: 43.33 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 4.46 Total: -38.36 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -1.27 Total: -67.94 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.42 Total: -36.53 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -67.20 5.08 -62.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559237103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.441 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds