Wall clock time and date at job start Tue Mar 31 2020 14:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42097 * 104.27771 * 206.07027 * 9 8 7 11 11 O 1.42099 * 104.27526 * 333.92935 * 9 8 7 12 12 C 1.81395 * 104.45065 * 89.99830 * 9 8 7 13 13 C 1.53000 * 109.47229 * 180.02562 * 12 9 8 14 14 N 1.46902 * 109.47339 * 179.97438 * 13 12 9 15 15 C 1.46898 * 111.00168 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47090 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00171 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00247 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47041 * 89.99852 * 20 18 16 22 22 H 1.48498 * 109.46838 * 210.00203 * 20 18 16 23 23 H 1.48500 * 109.47095 * 329.99811 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47718 * 300.00228 * 12 9 8 38 38 H 1.09006 * 109.47298 * 60.00280 * 12 9 8 39 39 H 1.09002 * 109.47035 * 299.99895 * 13 12 9 40 40 H 1.08996 * 109.47414 * 60.00062 * 13 12 9 41 41 H 1.00909 * 110.99739 * 56.04754 * 14 13 12 42 42 H 1.09001 * 109.47351 * 300.00272 * 15 14 13 43 43 H 1.09003 * 109.46659 * 60.00623 * 15 14 13 44 44 H 0.96993 * 119.99835 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.7403 -1.7986 5.8744 11 8 2.5685 -3.8583 5.1637 12 6 5.1172 -3.5693 4.4296 13 6 5.7282 -4.3253 5.6111 14 7 7.0106 -4.9154 5.2046 15 6 7.6280 -5.6504 6.3166 16 6 8.9388 -6.2396 5.8629 17 1 9.2793 -6.0834 4.8499 18 6 9.7033 -6.9782 6.7410 19 7 10.8469 -7.4929 6.3450 20 14 9.1139 -7.2490 8.4928 21 1 8.2949 -8.4862 8.5539 22 1 10.2864 -7.3865 9.3938 23 1 8.2921 -6.0896 8.9235 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 4.9539 -4.2599 3.6022 38 1 5.7970 -2.7780 4.1135 39 1 5.8916 -3.6351 6.4388 40 1 5.0484 -5.1167 5.9268 41 1 7.6363 -4.2093 4.8466 42 1 7.8050 -4.9690 7.1487 43 1 6.9613 -6.4507 6.6377 44 1 11.3849 -8.0121 6.9629 45 1 3.9085 -0.1651 3.9801 46 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579465272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:34 Heat of formation + Delta-G solvation = -56.636401 kcal Electronic energy + Delta-G solvation = -24781.063695 eV Core-core repulsion = 21183.528804 eV Total energy + Delta-G solvation = -3597.534891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30440 -37.14566 -36.85438 -36.14028 -35.93011 -32.76518 -31.57259 -30.78219 -30.56906 -27.87548 -27.73731 -26.72173 -24.00841 -22.83998 -22.44607 -21.25163 -19.84869 -19.12273 -18.05302 -16.85835 -16.37734 -16.36046 -15.96746 -15.61297 -15.12159 -14.99653 -14.78269 -14.38204 -14.14807 -13.85215 -13.77804 -13.50875 -13.40270 -13.30550 -12.81369 -12.62129 -12.48357 -12.39987 -12.17199 -12.11784 -12.07979 -11.88212 -11.58604 -11.50549 -11.47807 -11.37718 -11.12600 -11.00614 -10.81001 -10.65875 -10.36046 -9.88344 -9.43265 -9.35904 -9.34121 -8.63322 -7.67817 -6.10238 -4.09280 -0.04911 0.54125 0.99709 2.79746 3.11935 3.27686 3.34917 3.37187 3.78526 4.02346 4.03585 4.21622 4.38758 4.47656 4.57536 4.59904 4.62654 4.74804 4.80968 4.97222 5.05693 5.12752 5.13861 5.21880 5.23701 5.27282 5.35083 5.38938 5.42200 5.44369 5.48706 5.59094 5.62697 5.70444 5.75701 5.80220 5.82253 5.89078 5.92748 6.14285 6.51626 6.66613 6.91760 7.48746 7.74373 8.15709 8.56286 8.96333 9.50781 11.02700 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002272 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.797969 B =12323.195698 C =12823.051409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.019 4.019 6 C -0.138 4.138 7 C -0.019 4.019 8 C -0.661 4.661 9 S 2.495 3.505 10 O -0.940 6.940 11 O -0.937 6.937 12 C -0.596 4.596 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.159 3.841 16 C -0.519 4.519 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.020 4.020 25 C -0.144 4.144 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.339 0.661 42 H -0.011 1.011 43 H 0.027 0.973 44 H 0.265 0.735 45 H 0.142 0.858 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 18.050 -14.246 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.204 4.204 4 C -0.197 4.197 5 C -0.019 4.019 6 C -0.157 4.157 7 C -0.038 4.038 8 C -0.748 4.748 9 S 2.675 3.325 10 O -0.937 6.937 11 O -0.934 6.934 12 C -0.727 4.727 13 C -0.069 4.069 14 N -0.302 5.302 15 C 0.031 3.969 16 C -0.557 4.557 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.039 4.039 25 C -0.163 4.163 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.157 0.843 42 H 0.007 0.993 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.159 0.841 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.845 17.346 -13.668 31.063 hybrid contribution 0.428 0.601 0.595 0.948 sum -21.417 17.947 -13.073 30.850 Atomic orbital electron populations 1.21903 0.93150 1.02413 1.02234 1.19658 0.96143 0.95384 0.92588 1.21995 1.01461 0.94636 1.02292 1.21904 1.01537 1.00350 0.95930 1.20183 0.93453 0.93742 0.94557 1.21105 1.01784 0.94605 0.98204 1.20974 0.91603 0.99868 0.91364 1.30619 1.14865 1.06867 1.22402 1.05470 0.77253 0.75035 0.74713 1.93561 1.86544 1.55638 1.57962 1.93566 1.57300 1.58944 1.83637 1.30340 1.19498 1.12266 1.10557 1.21641 0.95819 0.97321 0.92098 1.60551 1.03724 1.29640 1.36267 1.20102 0.95374 0.93143 0.88265 1.21000 1.01886 1.32598 1.00237 0.90198 1.24905 0.94713 0.95143 0.98536 1.69891 1.12738 1.35170 1.35883 0.86829 0.78601 0.79236 0.84935 1.19988 1.21094 1.19142 1.20995 0.94888 0.92148 0.95867 1.21320 0.99510 1.00833 0.94619 0.92318 0.91948 0.92160 0.91965 0.92031 0.92054 0.92139 0.91961 0.92187 0.85154 0.83965 0.83760 0.84806 0.94332 0.89915 0.84299 0.99296 0.95547 0.92543 0.84063 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.29 37.16 0.31 -0.44 16 2 C -0.04 -0.22 0.85 -155.66 -0.13 -0.36 16 3 C -0.15 -0.75 7.13 37.16 0.26 -0.48 16 4 C -0.14 -0.76 8.29 37.16 0.31 -0.45 16 5 C -0.02 -0.16 4.76 -104.62 -0.50 -0.65 16 6 C -0.14 -1.18 8.71 -39.59 -0.34 -1.52 16 7 C -0.02 -0.19 9.47 -39.59 -0.37 -0.57 16 8 C -0.66 -7.11 5.66 -39.58 -0.22 -7.34 16 9 S 2.49 30.83 5.16 -107.50 -0.55 30.27 16 10 O -0.94 -14.02 17.12 -57.54 -0.99 -15.00 16 11 O -0.94 -14.08 17.13 -57.54 -0.99 -15.07 16 12 C -0.60 -7.04 6.24 37.16 0.23 -6.80 16 13 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 14 N -0.67 -13.43 6.49 -115.06 -0.75 -14.18 16 15 C 0.16 3.83 4.51 -4.98 -0.02 3.81 16 16 C -0.52 -14.73 9.87 -34.44 -0.34 -15.07 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 20 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.02 -0.20 9.47 -39.58 -0.37 -0.57 16 25 C -0.14 -1.23 8.98 -39.58 -0.36 -1.58 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 29 H 0.06 0.31 7.52 -51.93 -0.39 -0.08 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 32 H 0.06 0.32 7.39 -51.93 -0.38 -0.06 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.13 0.84 7.10 -52.49 -0.37 0.46 16 36 H 0.14 1.26 7.58 -52.49 -0.40 0.86 16 37 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.13 1.28 8.14 -51.92 -0.42 0.86 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.34 6.37 8.72 -39.29 -0.34 6.02 16 42 H -0.01 -0.25 7.20 -51.93 -0.37 -0.63 16 43 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.14 1.23 7.57 -52.49 -0.40 0.83 16 46 H 0.14 0.86 5.90 -52.49 -0.31 0.55 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -35.52 382.55 -10.61 -46.12 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.53 Total: 1.04 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -1.67 Total: -29.14 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.03 Total: -40.83 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.97 Total: -30.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 30.83 SS G_CDS: -0.55 Total: 30.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.52 -10.61 -46.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579465272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds