Wall clock time and date at job start Tue Mar 31 2020 14:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42097 * 104.27771 * 206.07027 * 9 8 7 11 11 O 1.42099 * 104.27526 * 333.92935 * 9 8 7 12 12 C 1.81395 * 104.45065 * 89.99830 * 9 8 7 13 13 C 1.53000 * 109.47229 * 180.02562 * 12 9 8 14 14 N 1.46902 * 109.47339 * 179.97438 * 13 12 9 15 15 C 1.46898 * 111.00168 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47090 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00171 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00247 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47041 * 89.99852 * 20 18 16 22 22 H 1.48498 * 109.46838 * 210.00203 * 20 18 16 23 23 H 1.48500 * 109.47095 * 329.99811 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47718 * 300.00228 * 12 9 8 38 38 H 1.09006 * 109.47298 * 60.00280 * 12 9 8 39 39 H 1.09002 * 109.47035 * 299.99895 * 13 12 9 40 40 H 1.08996 * 109.47414 * 60.00062 * 13 12 9 41 41 H 1.00909 * 110.99739 * 56.04754 * 14 13 12 42 42 H 1.09001 * 109.47351 * 300.00272 * 15 14 13 43 43 H 1.09003 * 109.46659 * 60.00623 * 15 14 13 44 44 H 0.96993 * 119.99835 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.7403 -1.7986 5.8744 11 8 2.5685 -3.8583 5.1637 12 6 5.1172 -3.5693 4.4296 13 6 5.7282 -4.3253 5.6111 14 7 7.0106 -4.9154 5.2046 15 6 7.6280 -5.6504 6.3166 16 6 8.9388 -6.2396 5.8629 17 1 9.2793 -6.0834 4.8499 18 6 9.7033 -6.9782 6.7410 19 7 10.8469 -7.4929 6.3450 20 14 9.1139 -7.2490 8.4928 21 1 8.2949 -8.4862 8.5539 22 1 10.2864 -7.3865 9.3938 23 1 8.2921 -6.0896 8.9235 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 4.9539 -4.2599 3.6022 38 1 5.7970 -2.7780 4.1135 39 1 5.8916 -3.6351 6.4388 40 1 5.0484 -5.1167 5.9268 41 1 7.6363 -4.2093 4.8466 42 1 7.8050 -4.9690 7.1487 43 1 6.9613 -6.4507 6.6377 44 1 11.3849 -8.0121 6.9629 45 1 3.9085 -0.1651 3.9801 46 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579465272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:34 Heat of formation + Delta-G solvation = -81.652472 kcal Electronic energy + Delta-G solvation = -24782.148473 eV Core-core repulsion = 21183.528804 eV Total energy + Delta-G solvation = -3598.619669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91682 -38.22380 -37.66337 -37.42391 -37.01508 -34.80326 -32.28335 -32.23584 -31.30398 -28.55052 -28.29083 -28.13109 -24.78345 -23.81967 -23.50334 -23.06006 -20.46067 -19.96255 -19.08483 -18.82733 -17.47407 -17.36334 -16.86957 -16.57255 -16.28557 -15.91225 -15.75868 -15.37301 -15.20198 -14.96287 -14.69267 -14.48263 -14.41937 -14.22720 -14.12449 -13.91387 -13.26295 -13.20850 -13.14969 -13.07674 -12.85566 -12.80761 -12.62236 -12.56301 -12.51599 -12.40086 -12.19594 -11.94319 -11.90965 -11.74827 -11.55039 -11.48468 -11.36479 -10.82435 -10.11717 -10.03405 -9.30034 -8.31784 -6.36717 -1.01721 -0.20065 0.30881 1.35956 1.36367 1.47276 1.87721 2.32832 2.38125 2.83459 3.02233 3.11193 3.44600 3.51843 3.61597 3.66976 3.84097 3.94737 4.06190 4.06295 4.29514 4.32918 4.33976 4.41869 4.55714 4.72272 4.75154 4.76003 4.77156 4.81522 4.88569 4.92533 4.97476 5.01683 5.01867 5.02161 5.08147 5.18369 5.29687 5.37976 5.40544 5.47585 5.56124 5.84729 5.85298 6.46502 6.56306 6.71941 7.28057 8.84458 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002272 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.797969 B =12323.195698 C =12823.051409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.019 4.019 6 C -0.142 4.142 7 C -0.034 4.034 8 C -0.667 4.667 9 S 2.512 3.488 10 O -0.969 6.969 11 O -0.969 6.969 12 C -0.587 4.587 13 C 0.051 3.949 14 N -0.678 5.678 15 C 0.164 3.836 16 C -0.529 4.529 17 H 0.042 0.958 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.947 3.053 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.250 1.250 24 C -0.034 4.034 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.345 0.655 42 H -0.006 1.006 43 H 0.029 0.971 44 H 0.268 0.732 45 H 0.149 0.851 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.976 19.348 -14.760 33.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.019 4.019 6 C -0.160 4.160 7 C -0.053 4.053 8 C -0.756 4.756 9 S 2.696 3.304 10 O -0.966 6.966 11 O -0.966 6.966 12 C -0.718 4.718 13 C -0.079 4.079 14 N -0.310 5.310 15 C 0.036 3.964 16 C -0.567 4.567 17 H 0.060 0.940 18 C -0.189 4.189 19 N -0.585 5.585 20 Si 0.770 3.230 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.174 1.174 24 C -0.053 4.053 25 C -0.167 4.167 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.163 0.837 42 H 0.011 0.989 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.166 0.834 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.553 18.650 -14.168 33.215 hybrid contribution 0.934 0.269 0.572 1.128 sum -22.619 18.919 -13.595 32.471 Atomic orbital electron populations 1.21912 0.92588 1.02619 1.02575 1.19717 0.96522 0.95722 0.91733 1.22012 1.01517 0.94086 1.02877 1.21910 1.01141 1.00553 0.96091 1.20529 0.92569 0.93700 0.95086 1.21378 1.01654 0.94978 0.98007 1.21183 0.91865 1.00416 0.91839 1.30226 1.16221 1.07281 1.21863 1.04645 0.76763 0.74160 0.74789 1.93517 1.86891 1.56376 1.59831 1.93520 1.58426 1.60024 1.84603 1.30250 1.19317 1.12891 1.09312 1.21772 0.93990 0.97949 0.94232 1.60410 1.05005 1.30559 1.34996 1.19892 0.93481 0.93591 0.89456 1.21284 1.03867 1.32806 0.98768 0.93981 1.25861 0.94728 0.94821 1.03502 1.70037 1.14283 1.36357 1.37796 0.85716 0.78450 0.79893 0.78929 1.19023 1.20521 1.17388 1.21216 0.95380 0.91977 0.96685 1.21611 0.99157 1.01813 0.94078 0.92930 0.90682 0.92062 0.91929 0.90969 0.92025 0.92033 0.90761 0.92812 0.83183 0.83441 0.82221 0.82340 0.93590 0.89889 0.83681 0.98863 0.95334 0.92273 0.83354 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.29 71.98 0.60 -0.58 16 2 C -0.04 -0.35 0.85 -52.93 -0.05 -0.40 16 3 C -0.15 -1.15 7.13 71.98 0.51 -0.64 16 4 C -0.14 -1.19 8.29 71.98 0.60 -0.60 16 5 C -0.02 -0.26 4.76 -19.86 -0.09 -0.36 16 6 C -0.14 -2.16 8.71 22.27 0.19 -1.97 16 7 C -0.03 -0.64 9.47 22.27 0.21 -0.43 16 8 C -0.67 -13.69 5.66 22.27 0.13 -13.56 16 9 S 2.51 60.42 5.16 -56.49 -0.29 60.13 16 10 O -0.97 -28.46 17.12 -127.65 -2.19 -30.65 16 11 O -0.97 -28.89 17.13 -127.65 -2.19 -31.07 16 12 C -0.59 -13.00 6.24 71.98 0.45 -12.55 16 13 C 0.05 1.59 5.69 86.30 0.49 2.08 16 14 N -0.68 -26.65 6.49 -517.93 -3.36 -30.01 16 15 C 0.16 7.81 4.51 85.56 0.39 8.20 16 16 C -0.53 -30.47 9.87 25.60 0.25 -30.22 16 17 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 18 C 0.01 0.51 5.47 84.65 0.46 0.98 16 19 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 20 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 24 C -0.03 -0.62 9.47 22.27 0.21 -0.41 16 25 C -0.15 -2.25 8.98 22.27 0.20 -2.05 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.50 7.39 -2.39 -0.02 0.49 16 29 H 0.06 0.49 7.52 -2.39 -0.02 0.47 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.48 7.51 -2.39 -0.02 0.46 16 32 H 0.06 0.51 7.39 -2.39 -0.02 0.49 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.15 1.60 7.10 -2.91 -0.02 1.58 16 36 H 0.15 2.50 7.58 -2.91 -0.02 2.47 16 37 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.16 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.35 12.75 8.72 -89.69 -0.78 11.97 16 42 H -0.01 -0.29 7.20 -2.39 -0.02 -0.31 16 43 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.15 2.42 7.57 -2.91 -0.02 2.40 16 46 H 0.16 1.64 5.90 -2.91 -0.02 1.63 16 Total: -1.00 -76.61 382.55 -1.17 -77.78 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.13 Total: 18.92 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 4.55 Total: -52.50 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -3.06 Total: -88.49 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -4.37 Total: -61.72 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 60.42 SS G_CDS: -0.29 Total: 60.13 kcal Total: -76.61 -1.17 -77.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579465272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.872 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds