Wall clock time and date at job start Tue Mar 31 2020 13:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38149 * 120.03123 * 2 1 4 4 C 1.38260 * 120.05935 * 179.70238 * 3 2 1 5 5 C 1.38274 * 120.10911 * 0.29856 * 4 3 2 6 6 C 1.38137 * 120.05833 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.03273 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.02795 * 180.25570 * 2 1 3 9 9 O 1.35901 * 120.05655 * 359.97438 * 8 2 1 10 10 C 1.42894 * 117.00159 * 270.27713 * 9 8 2 11 11 C 1.50698 * 109.47022 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.39121 * 120.00291 * 175.26551 * 13 11 10 15 15 C 1.38649 * 120.28649 * 34.21150 * 14 13 11 16 16 C 1.38218 * 120.03441 * 180.02562 * 15 14 13 17 17 C 1.38860 * 120.61579 * 359.97438 * 16 15 14 18 18 C 1.36461 * 120.58259 * 0.02562 * 17 16 15 19 19 C 1.40739 * 119.94098 * 359.70178 * 18 17 16 20 20 C 1.41071 * 120.30448 * 180.29348 * 19 18 17 21 21 H 1.07999 * 119.99744 * 148.80307 * 20 19 18 22 22 C 1.39955 * 120.00213 * 328.80835 * 20 19 18 23 23 N 1.30845 * 120.00109 * 167.53937 * 22 20 19 24 24 Si 1.86804 * 119.99674 * 347.53984 * 22 20 19 25 25 H 1.48500 * 109.47379 * 92.50219 * 24 22 20 26 26 H 1.48501 * 109.47050 * 212.50488 * 24 22 20 27 27 H 1.48503 * 109.47100 * 332.50290 * 24 22 20 28 28 H 1.08996 * 109.46856 * 89.99385 * 1 2 3 29 29 H 1.08991 * 109.47154 * 209.99870 * 1 2 3 30 30 H 1.08996 * 109.46706 * 330.00199 * 1 2 3 31 31 H 1.08000 * 119.96647 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.94959 * 180.27872 * 4 3 2 33 33 H 1.07999 * 119.96857 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.46868 * 89.99806 * 7 6 5 35 35 H 1.08997 * 109.47719 * 209.99855 * 7 6 5 36 36 H 1.09002 * 109.47109 * 330.00264 * 7 6 5 37 37 H 1.09004 * 109.47363 * 300.00310 * 10 9 8 38 38 H 1.09003 * 109.47311 * 60.00123 * 10 9 8 39 39 H 0.97008 * 119.99730 * 355.25812 * 13 11 10 40 40 H 1.08000 * 119.97783 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.68964 * 179.97438 * 16 15 14 42 42 H 1.08001 * 119.71008 * 180.02562 * 17 16 15 43 43 H 1.07997 * 120.03404 * 179.97438 * 18 17 16 44 44 H 0.97008 * 119.99699 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1967 0.0062 5 6 4.2752 0.0009 0.0062 6 6 3.5887 -1.1978 0.0005 7 6 4.3459 -2.5007 0.0011 8 6 2.2013 -1.2011 -0.0054 9 8 1.5235 -2.3791 -0.0101 10 6 1.1951 -2.9437 1.2608 11 6 0.4502 -4.2379 1.0581 12 8 0.2226 -4.6372 -0.0642 13 7 0.0361 -4.9513 2.1240 14 6 -0.7361 -6.0936 1.9392 15 6 -0.5308 -6.9051 0.8339 16 6 -1.3014 -8.0385 0.6551 17 6 -2.2848 -8.3774 1.5750 18 6 -2.5083 -7.5968 2.6717 19 6 -1.7337 -6.4404 2.8804 20 6 -1.9540 -5.6313 4.0148 21 1 -1.1323 -5.0897 4.4596 22 6 -3.2374 -5.5305 4.5640 23 7 -3.4038 -4.9875 5.7428 24 14 -4.7127 -6.1713 3.6141 25 1 -4.9823 -7.5775 4.0078 26 1 -5.9006 -5.3348 3.9213 27 1 -4.4280 -6.1109 2.1578 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6584 2.1313 -0.0004 32 1 4.1197 2.1328 0.0108 33 1 5.3552 0.0041 0.0115 34 1 4.5238 -2.8170 1.0290 35 1 3.7614 -3.2609 -0.5169 36 1 5.3002 -2.3665 -0.5081 37 1 2.1104 -3.1347 1.8210 38 1 0.5676 -2.2470 1.8168 39 1 0.2766 -4.6682 3.0202 40 1 0.2316 -6.6513 0.1123 41 1 -1.1370 -8.6664 -0.2081 42 1 -2.8782 -9.2666 1.4210 43 1 -3.2757 -7.8685 3.3813 44 1 -4.2934 -4.9173 6.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580051349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:46 Heat of formation + Delta-G solvation = -30.122203 kcal Electronic energy + Delta-G solvation = -26730.562208 eV Core-core repulsion = 22998.733108 eV Total energy + Delta-G solvation = -3731.829100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46932 -39.56295 -37.73557 -36.87010 -33.95243 -33.72653 -33.65145 -31.35882 -30.48821 -29.67605 -27.92142 -26.77784 -26.52153 -25.02016 -22.33139 -21.85002 -21.02730 -20.79352 -19.69922 -17.87711 -17.50753 -17.26030 -16.69559 -16.28486 -15.65080 -15.24228 -15.04597 -14.77090 -14.13321 -14.07789 -13.79262 -13.69309 -13.31233 -13.20531 -13.13914 -13.06083 -12.80490 -12.64493 -12.40629 -12.12981 -12.02524 -11.74340 -11.67736 -11.43561 -11.32452 -11.10669 -10.91666 -10.46852 -10.06135 -9.94852 -9.87632 -9.42150 -9.38523 -8.88514 -8.75178 -8.64943 -7.67767 -7.19113 -7.00746 -4.54989 1.01500 1.16070 2.35787 2.62440 2.97892 3.06708 3.12113 3.26860 3.29908 3.58581 3.93668 4.22882 4.49236 4.62104 4.66168 4.78708 5.04016 5.08346 5.13486 5.18016 5.26495 5.32504 5.36235 5.44812 5.50124 5.61525 5.64562 5.68004 5.99403 6.04335 6.11571 6.15069 6.27453 6.29517 6.31562 6.43501 6.57335 6.61458 6.69139 6.92794 7.12358 7.30308 7.43605 7.47382 7.66398 7.77714 7.91543 8.17702 8.21056 8.51937 8.67007 8.82086 10.01244 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.003173 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.818351 B = 8823.045851 C = 9759.361778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.095 4.095 7 C -0.117 4.117 8 C 0.092 3.908 9 O -0.304 6.304 10 C 0.050 3.950 11 C 0.503 3.497 12 O -0.517 6.517 13 N -0.636 5.636 14 C 0.031 3.969 15 C -0.076 4.076 16 C -0.226 4.226 17 C -0.086 4.086 18 C -0.226 4.226 19 C 0.086 3.914 20 C -0.450 4.450 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.813 5.813 24 Si 0.912 3.088 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.243 1.243 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.405 0.595 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 10.248 -5.933 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.173 4.173 8 C 0.048 3.952 9 O -0.220 6.220 10 C -0.028 4.028 11 C 0.289 3.711 12 O -0.392 6.392 13 N -0.280 5.280 14 C -0.062 4.062 15 C -0.096 4.096 16 C -0.246 4.246 17 C -0.105 4.105 18 C -0.246 4.246 19 C 0.081 3.919 20 C -0.479 4.479 21 H 0.106 0.894 22 C -0.133 4.133 23 N -0.438 5.438 24 Si 0.739 3.261 25 H -0.196 1.196 26 H -0.221 1.221 27 H -0.166 1.166 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.241 0.759 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.684 10.017 -6.650 16.085 hybrid contribution -0.594 0.113 0.503 0.787 sum 10.089 10.131 -6.147 15.563 Atomic orbital electron populations 1.20746 0.90415 1.02944 1.02981 1.20301 0.96949 0.92439 0.99672 1.20930 0.94173 0.97095 1.01332 1.21135 0.94234 0.98013 1.00257 1.20919 0.99758 0.91460 1.01479 1.20263 0.92970 0.96320 1.00014 1.20757 0.99683 0.94415 1.02488 1.18423 0.89415 0.85053 1.02342 1.86104 1.74485 1.34468 1.26947 1.22412 0.99991 0.94420 0.85947 1.19981 0.80760 0.84893 0.85477 1.90684 1.55356 1.69728 1.23478 1.42684 1.50981 1.25453 1.08898 1.17534 1.00373 0.89337 0.98965 1.20821 0.98979 0.92992 0.96847 1.20344 1.02316 1.00361 1.01584 1.20391 0.97299 0.98164 0.94619 1.20641 1.05601 0.97534 1.00794 1.17546 0.90020 0.92150 0.92138 1.19180 0.95952 1.24688 1.08122 0.89379 1.26061 1.00958 0.92452 0.93828 1.69646 1.25761 1.34333 1.14021 0.86315 0.78803 0.78120 0.82826 1.19645 1.22069 1.16594 0.90663 0.91075 0.91458 0.85692 0.85868 0.85746 0.91220 0.90389 0.91408 0.90203 0.89783 0.75909 0.86532 0.88453 0.88728 0.87842 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.79 36.01 0.35 -0.97 16 2 C -0.09 -1.14 5.89 -104.47 -0.62 -1.76 16 3 C -0.12 -1.19 9.70 -39.61 -0.38 -1.57 16 4 C -0.12 -1.09 10.04 -39.56 -0.40 -1.49 16 5 C -0.12 -1.16 9.70 -39.60 -0.38 -1.55 16 6 C -0.10 -1.12 5.89 -104.47 -0.62 -1.74 16 7 C -0.12 -1.22 9.79 36.00 0.35 -0.87 16 8 C 0.09 1.24 5.67 -39.21 -0.22 1.02 16 9 O -0.30 -4.79 7.86 -39.34 -0.31 -5.10 16 10 C 0.05 0.73 6.17 36.00 0.22 0.95 16 11 C 0.50 9.46 7.75 -10.99 -0.09 9.37 16 12 O -0.52 -11.62 13.88 -14.35 -0.20 -11.82 16 13 N -0.64 -12.38 5.03 -9.47 -0.05 -12.43 16 14 C 0.03 0.72 6.35 -83.17 -0.53 0.19 16 15 C -0.08 -1.72 8.69 -39.44 -0.34 -2.07 16 16 C -0.23 -4.88 10.04 -39.36 -0.40 -5.28 16 17 C -0.09 -1.87 9.96 -39.99 -0.40 -2.27 16 18 C -0.23 -5.35 6.95 -39.28 -0.27 -5.62 16 19 C 0.09 2.09 5.14 -106.65 -0.55 1.54 16 20 C -0.45 -11.32 9.13 -37.87 -0.35 -11.66 16 21 H 0.09 2.20 7.08 -52.49 -0.37 1.83 16 22 C 0.09 2.15 5.47 -17.33 -0.09 2.05 16 23 N -0.81 -20.73 13.93 55.55 0.77 -19.96 16 24 Si 0.91 20.57 24.41 -169.99 -4.15 16.42 16 25 H -0.27 -5.89 6.66 56.52 0.38 -5.51 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.24 -5.74 6.69 56.52 0.38 -5.37 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.08 0.96 7.53 -51.93 -0.39 0.56 16 36 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.10 7.23 -51.93 -0.38 0.72 16 39 H 0.41 6.96 7.58 -40.82 -0.31 6.65 16 40 H 0.12 2.62 6.15 -52.49 -0.32 2.30 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.10 2.42 4.42 -52.49 -0.23 2.19 16 44 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -30.10 363.16 -8.90 -39.00 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.74 Total: 10.13 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -4.70 Total: -21.72 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.73 Total: -32.39 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.51 Total: -16.92 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.15 Total: 16.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.10 -8.90 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580051349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.875 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds