Wall clock time and date at job start Tue Mar 31 2020 13:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38149 * 120.03123 * 2 1 4 4 C 1.38260 * 120.05935 * 179.70238 * 3 2 1 5 5 C 1.38274 * 120.10911 * 0.29856 * 4 3 2 6 6 C 1.38137 * 120.05833 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.03273 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.02795 * 180.25570 * 2 1 3 9 9 O 1.35901 * 120.05655 * 359.97438 * 8 2 1 10 10 C 1.42894 * 117.00159 * 270.27713 * 9 8 2 11 11 C 1.50698 * 109.47022 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.39121 * 120.00291 * 175.26551 * 13 11 10 15 15 C 1.38649 * 120.28649 * 34.21150 * 14 13 11 16 16 C 1.38218 * 120.03441 * 180.02562 * 15 14 13 17 17 C 1.38860 * 120.61579 * 359.97438 * 16 15 14 18 18 C 1.36461 * 120.58259 * 0.02562 * 17 16 15 19 19 C 1.40739 * 119.94098 * 359.70178 * 18 17 16 20 20 C 1.41071 * 120.30448 * 180.29348 * 19 18 17 21 21 H 1.07999 * 119.99744 * 148.80307 * 20 19 18 22 22 C 1.39955 * 120.00213 * 328.80835 * 20 19 18 23 23 N 1.30845 * 120.00109 * 167.53937 * 22 20 19 24 24 Si 1.86804 * 119.99674 * 347.53984 * 22 20 19 25 25 H 1.48500 * 109.47379 * 92.50219 * 24 22 20 26 26 H 1.48501 * 109.47050 * 212.50488 * 24 22 20 27 27 H 1.48503 * 109.47100 * 332.50290 * 24 22 20 28 28 H 1.08996 * 109.46856 * 89.99385 * 1 2 3 29 29 H 1.08991 * 109.47154 * 209.99870 * 1 2 3 30 30 H 1.08996 * 109.46706 * 330.00199 * 1 2 3 31 31 H 1.08000 * 119.96647 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.94959 * 180.27872 * 4 3 2 33 33 H 1.07999 * 119.96857 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.46868 * 89.99806 * 7 6 5 35 35 H 1.08997 * 109.47719 * 209.99855 * 7 6 5 36 36 H 1.09002 * 109.47109 * 330.00264 * 7 6 5 37 37 H 1.09004 * 109.47363 * 300.00310 * 10 9 8 38 38 H 1.09003 * 109.47311 * 60.00123 * 10 9 8 39 39 H 0.97008 * 119.99730 * 355.25812 * 13 11 10 40 40 H 1.08000 * 119.97783 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.68964 * 179.97438 * 16 15 14 42 42 H 1.08001 * 119.71008 * 180.02562 * 17 16 15 43 43 H 1.07997 * 120.03404 * 179.97438 * 18 17 16 44 44 H 0.97008 * 119.99699 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1967 0.0062 5 6 4.2752 0.0009 0.0062 6 6 3.5887 -1.1978 0.0005 7 6 4.3459 -2.5007 0.0011 8 6 2.2013 -1.2011 -0.0054 9 8 1.5235 -2.3791 -0.0101 10 6 1.1951 -2.9437 1.2608 11 6 0.4502 -4.2379 1.0581 12 8 0.2226 -4.6372 -0.0642 13 7 0.0361 -4.9513 2.1240 14 6 -0.7361 -6.0936 1.9392 15 6 -0.5308 -6.9051 0.8339 16 6 -1.3014 -8.0385 0.6551 17 6 -2.2848 -8.3774 1.5750 18 6 -2.5083 -7.5968 2.6717 19 6 -1.7337 -6.4404 2.8804 20 6 -1.9540 -5.6313 4.0148 21 1 -1.1323 -5.0897 4.4596 22 6 -3.2374 -5.5305 4.5640 23 7 -3.4038 -4.9875 5.7428 24 14 -4.7127 -6.1713 3.6141 25 1 -4.9823 -7.5775 4.0078 26 1 -5.9006 -5.3348 3.9213 27 1 -4.4280 -6.1109 2.1578 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6584 2.1313 -0.0004 32 1 4.1197 2.1328 0.0108 33 1 5.3552 0.0041 0.0115 34 1 4.5238 -2.8170 1.0290 35 1 3.7614 -3.2609 -0.5169 36 1 5.3002 -2.3665 -0.5081 37 1 2.1104 -3.1347 1.8210 38 1 0.5676 -2.2470 1.8168 39 1 0.2766 -4.6682 3.0202 40 1 0.2316 -6.6513 0.1123 41 1 -1.1370 -8.6664 -0.2081 42 1 -2.8782 -9.2666 1.4210 43 1 -3.2757 -7.8685 3.3813 44 1 -4.2934 -4.9173 6.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580051349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:46 Heat of formation + Delta-G solvation = -45.602085 kcal Electronic energy + Delta-G solvation = -26731.233466 eV Core-core repulsion = 22998.733108 eV Total energy + Delta-G solvation = -3732.500358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62081 -40.94556 -39.26835 -38.05980 -35.62995 -35.49493 -34.55283 -32.32233 -32.24510 -31.14686 -29.25221 -27.61389 -27.56485 -26.78795 -23.96312 -22.87368 -22.42087 -21.85739 -21.32564 -19.37082 -18.95651 -18.80362 -17.81011 -17.70876 -17.04355 -16.44467 -16.33888 -16.03872 -15.78987 -15.39419 -15.11153 -14.95640 -14.76293 -14.54326 -14.16912 -14.05052 -13.93765 -13.89511 -13.84902 -13.61785 -13.48124 -12.89601 -12.87743 -12.74255 -12.49598 -12.32641 -12.24508 -12.11514 -11.83144 -11.70094 -11.23830 -11.04697 -10.96259 -10.57000 -9.55232 -9.51358 -9.50853 -8.94442 -8.88258 -6.45248 0.15734 0.35911 0.62114 0.80005 1.26229 1.36190 1.48110 1.59416 1.86512 2.11517 2.61640 2.65133 3.08335 3.44389 3.68783 3.79413 3.86554 4.01684 4.06955 4.09537 4.29028 4.37630 4.40871 4.44969 4.52168 4.59684 4.64339 4.69204 4.74126 4.79652 4.84435 4.90907 4.92793 5.15017 5.18506 5.30113 5.30752 5.49896 5.50705 5.58290 5.60303 5.67098 5.81759 5.91890 5.98018 6.08509 6.35561 6.43549 6.56079 6.76775 6.80538 7.23672 8.17911 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.003173 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.818351 B = 8823.045851 C = 9759.361778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.114 4.114 8 C 0.059 3.941 9 O -0.327 6.327 10 C 0.060 3.940 11 C 0.504 3.496 12 O -0.556 6.556 13 N -0.635 5.635 14 C 0.028 3.972 15 C -0.093 4.093 16 C -0.217 4.217 17 C -0.091 4.091 18 C -0.239 4.239 19 C 0.065 3.935 20 C -0.470 4.470 21 H 0.076 0.924 22 C 0.055 3.945 23 N -0.845 5.845 24 Si 0.955 3.045 25 H -0.256 1.256 26 H -0.284 1.284 27 H -0.262 1.262 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.415 0.585 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.133 11.152 -6.626 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.171 4.171 8 C 0.016 3.984 9 O -0.244 6.244 10 C -0.017 4.017 11 C 0.292 3.708 12 O -0.435 6.435 13 N -0.280 5.280 14 C -0.066 4.066 15 C -0.113 4.113 16 C -0.236 4.236 17 C -0.109 4.109 18 C -0.259 4.259 19 C 0.061 3.939 20 C -0.500 4.500 21 H 0.094 0.906 22 C -0.160 4.160 23 N -0.472 5.472 24 Si 0.781 3.219 25 H -0.182 1.182 26 H -0.211 1.211 27 H -0.186 1.186 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.252 0.748 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.122 0.878 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.804 10.931 -7.318 17.674 hybrid contribution -0.790 -0.147 0.578 0.990 sum 11.014 10.784 -6.740 16.823 Atomic orbital electron populations 1.20728 0.90662 1.02857 1.02704 1.20464 0.97100 0.92971 1.00528 1.21246 0.94926 0.97100 1.00449 1.21560 0.94001 0.99190 0.98239 1.21273 1.01164 0.90838 1.00281 1.20477 0.92436 0.97619 1.00289 1.20747 1.00023 0.93343 1.02966 1.18733 0.90318 0.84563 1.04821 1.86072 1.75184 1.35810 1.27294 1.22319 1.00785 0.92199 0.86420 1.20695 0.79883 0.85725 0.84473 1.90650 1.56928 1.70946 1.24931 1.42721 1.50547 1.24898 1.09804 1.17767 1.00028 0.90197 0.98620 1.21003 0.99687 0.93747 0.96887 1.20768 1.01057 0.99754 1.02064 1.20744 0.97484 0.98976 0.93737 1.20843 1.05655 0.97704 1.01664 1.17719 0.91024 0.92745 0.92451 1.19208 0.96055 1.25692 1.09028 0.90607 1.26557 1.02454 0.92700 0.94330 1.69661 1.26616 1.35984 1.14911 0.85658 0.77107 0.78644 0.80538 1.18176 1.21068 1.18612 0.91083 0.93242 0.89392 0.83422 0.82639 0.83081 0.90338 0.92919 0.89368 0.87437 0.88474 0.74802 0.86685 0.85530 0.85298 0.87761 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 9.79 71.24 0.70 -1.92 16 2 C -0.11 -2.61 5.89 -19.77 -0.12 -2.73 16 3 C -0.12 -2.13 9.70 22.25 0.22 -1.92 16 4 C -0.11 -1.69 10.04 22.28 0.22 -1.47 16 5 C -0.12 -1.98 9.70 22.25 0.22 -1.76 16 6 C -0.11 -2.40 5.89 -19.77 -0.12 -2.52 16 7 C -0.11 -2.27 9.79 71.23 0.70 -1.58 16 8 C 0.06 1.58 5.67 22.51 0.13 1.71 16 9 O -0.33 -10.54 7.86 -73.40 -0.58 -11.12 16 10 C 0.06 1.76 6.17 71.24 0.44 2.20 16 11 C 0.50 19.38 7.75 87.66 0.68 20.06 16 12 O -0.56 -25.71 13.88 16.02 0.22 -25.49 16 13 N -0.64 -25.26 5.03 -302.28 -1.52 -26.78 16 14 C 0.03 1.30 6.35 38.88 0.25 1.55 16 15 C -0.09 -4.18 8.69 22.36 0.19 -3.99 16 16 C -0.22 -8.97 10.04 22.41 0.22 -8.75 16 17 C -0.09 -3.78 9.96 22.00 0.22 -3.56 16 18 C -0.24 -11.14 6.95 22.47 0.16 -10.99 16 19 C 0.06 3.18 5.14 -21.18 -0.11 3.07 16 20 C -0.47 -24.20 9.13 23.38 0.21 -23.98 16 21 H 0.08 3.95 7.08 -2.91 -0.02 3.92 16 22 C 0.05 2.78 5.47 85.26 0.47 3.24 16 23 N -0.85 -43.78 13.93 21.83 0.30 -43.47 16 24 Si 0.95 42.24 24.41 68.60 1.67 43.92 16 25 H -0.26 -10.65 6.66 99.48 0.66 -9.99 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -12.29 6.69 99.48 0.67 -11.62 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.34 6.30 -2.39 -0.02 1.32 16 30 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 31 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 36 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.10 2.58 7.23 -2.39 -0.02 2.56 16 39 H 0.41 14.65 7.58 -92.70 -0.70 13.95 16 40 H 0.12 5.20 6.15 -2.91 -0.02 5.19 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.10 4.78 4.42 -2.91 -0.01 4.77 16 44 H 0.29 13.82 8.30 -92.70 -0.77 13.05 16 Total: -1.00 -66.09 363.16 5.03 -61.06 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.25 Total: 35.21 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.68 Total: -33.32 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.22 Total: -70.25 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.35 Total: -36.61 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.92 kcal Total: -66.09 5.03 -61.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580051349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.456 kcal (2) G-P(sol) polarization free energy of solvation -66.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds