Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 119.97242 * 2 1 4 4 C 1.38270 * 120.11117 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97283 * 179.97438 * 4 3 2 6 6 C 1.38144 * 120.05526 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.94401 * 359.97438 * 6 4 3 8 8 O 1.35905 * 120.05665 * 180.02562 * 7 6 4 9 9 C 1.42896 * 117.00186 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47069 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 C 1.38151 * 119.97088 * 180.22654 * 2 1 3 28 28 H 1.09001 * 109.46955 * 90.00278 * 1 2 3 29 29 H 1.09005 * 109.47551 * 210.00643 * 1 2 3 30 30 H 1.09007 * 109.47214 * 330.00525 * 1 2 3 31 31 H 1.07993 * 119.94864 * 359.96994 * 3 2 1 32 32 H 1.09002 * 109.47394 * 269.97925 * 5 4 3 33 33 H 1.08998 * 109.46969 * 29.97797 * 5 4 3 34 34 H 1.08999 * 109.46948 * 149.98067 * 5 4 3 35 35 H 1.07994 * 120.02763 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46992 * 59.99635 * 9 8 7 37 37 H 1.08999 * 109.47382 * 299.99989 * 9 8 7 38 38 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 39 39 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 40 40 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 41 41 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 44 44 H 1.08002 * 120.02670 * 0.02992 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5084 -0.0001 6 6 4.2752 0.0071 0.0016 7 6 3.5844 -1.1961 0.0027 8 8 4.2656 -2.3721 0.0043 9 6 3.4891 -3.5716 0.0059 10 6 4.4088 -4.7653 0.0068 11 8 5.6109 -4.6048 0.0067 12 7 3.8954 -6.0116 0.0089 13 6 4.7413 -7.1122 0.1017 14 6 5.9929 -7.0844 -0.4943 15 6 6.8270 -8.1828 -0.4035 16 6 6.4268 -9.3196 0.2864 17 6 5.2022 -9.3723 0.8865 18 6 4.3338 -8.2676 0.8091 19 6 3.0662 -8.3141 1.4262 20 1 2.5778 -7.3988 1.7265 21 6 2.4412 -9.5464 1.6491 22 7 2.7373 -10.5757 0.8974 23 14 1.1844 -9.7218 3.0199 24 1 0.6737 -11.1159 3.0479 25 1 1.8241 -9.4032 4.3217 26 1 0.0567 -8.7858 2.7803 27 6 2.1971 -1.1968 -0.0047 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6564 2.1322 -0.0005 32 1 4.5116 2.8227 -1.0279 33 1 3.7384 3.2667 0.5127 34 1 5.2825 2.3812 0.5145 35 1 5.3551 0.0102 0.0016 36 1 2.8602 -3.5985 -0.8841 37 1 2.8603 -3.5962 0.8959 38 1 2.9362 -6.1410 -0.0543 39 1 6.3143 -6.2057 -1.0338 40 1 7.7992 -8.1566 -0.8730 41 1 7.0903 -10.1694 0.3485 42 1 4.9002 -10.2608 1.4211 43 1 3.3303 -10.4667 0.1375 44 1 1.6570 -2.1321 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582085989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -42.552853 kcal Electronic energy + Delta-G solvation = -26012.767531 eV Core-core repulsion = 22280.399397 eV Total energy + Delta-G solvation = -3732.368134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50819 -39.55273 -37.99574 -37.12161 -34.03637 -33.87109 -33.75877 -31.31788 -29.60638 -29.33674 -27.78372 -27.42054 -26.63322 -25.07915 -22.29836 -21.68598 -21.15923 -20.69806 -19.55308 -18.10158 -17.75864 -17.12389 -16.29920 -16.23909 -15.96225 -15.70330 -14.80229 -14.52427 -14.22971 -14.16350 -13.97537 -13.89374 -13.46005 -13.32703 -13.21210 -12.89024 -12.77717 -12.63565 -12.29631 -12.06874 -12.01128 -11.98085 -11.63143 -11.49732 -11.09396 -11.04255 -10.83083 -10.74056 -10.48556 -10.36143 -9.76172 -9.41442 -9.11568 -8.93081 -8.80706 -8.27568 -7.67283 -7.44837 -7.03474 -4.54176 1.13659 1.29990 2.46243 2.72866 2.76235 3.07965 3.17244 3.23264 3.28761 3.55044 3.91941 3.99970 4.48827 4.50823 4.57832 4.80997 4.95401 5.01758 5.06201 5.10445 5.12991 5.15153 5.32751 5.38425 5.38878 5.41381 5.51011 5.62567 5.70100 5.96655 6.16604 6.17350 6.27889 6.32371 6.43383 6.43751 6.61995 6.75968 6.89193 7.07502 7.28169 7.32255 7.46790 7.66122 7.70394 7.86368 7.95734 8.15432 8.25394 8.59060 8.70413 8.85480 9.94461 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002814 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.608479 B = 9949.277625 C =11631.327853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.163 4.163 4 C -0.045 4.045 5 C -0.114 4.114 6 C -0.158 4.158 7 C 0.142 3.858 8 O -0.287 6.287 9 C 0.044 3.956 10 C 0.499 3.501 11 O -0.517 6.517 12 N -0.631 5.631 13 C 0.004 3.996 14 C -0.071 4.071 15 C -0.240 4.240 16 C -0.090 4.090 17 C -0.208 4.208 18 C 0.092 3.908 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.041 3.959 22 N -0.793 5.793 23 Si 1.064 2.936 24 H -0.273 1.273 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.403 0.597 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.301 0.699 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 18.277 -1.688 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.046 4.046 5 C -0.170 4.170 6 C -0.176 4.176 7 C 0.096 3.904 8 O -0.199 6.199 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.393 6.393 12 N -0.275 5.275 13 C -0.089 4.089 14 C -0.091 4.091 15 C -0.260 4.260 16 C -0.109 4.109 17 C -0.228 4.228 18 C 0.088 3.912 19 C -0.554 4.554 20 H 0.092 0.908 21 C -0.182 4.182 22 N -0.416 5.416 23 Si 0.887 3.113 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.237 4.237 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.239 0.761 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.163 17.237 -0.945 18.330 hybrid contribution 0.335 0.866 -0.777 1.211 sum -5.828 18.103 -1.722 19.096 Atomic orbital electron populations 1.20822 0.90980 1.02953 1.02500 1.19671 0.95951 0.92412 0.96344 1.20775 0.93388 0.97449 1.06555 1.19664 0.93609 0.94513 0.96769 1.20801 1.00067 0.93646 1.02535 1.20285 1.00447 0.89137 1.07757 1.19047 0.90478 0.85907 0.94973 1.86175 1.34253 1.11328 1.88108 1.22493 0.93971 0.83419 1.03595 1.19934 0.89104 0.83831 0.78737 1.90696 1.14968 1.85388 1.48278 1.42612 1.10481 1.03627 1.70766 1.17545 0.93916 0.89871 1.07596 1.20715 0.93364 0.97345 0.97697 1.20273 1.00189 0.95222 1.10319 1.20419 0.95978 0.96540 0.97957 1.20760 0.94775 1.00320 1.06911 1.17476 0.93648 0.90793 0.89262 1.20323 1.02489 0.96189 1.36365 0.90772 1.26978 0.99710 0.91541 0.99959 1.70470 1.26356 1.33231 1.11514 0.83646 0.75140 0.77330 0.75152 1.19807 1.19999 1.20159 1.21152 0.92866 0.99097 1.10611 0.90932 0.91336 0.91377 0.86095 0.90905 0.91367 0.91245 0.85114 0.89286 0.89021 0.76129 0.87109 0.88891 0.89076 0.87277 0.88542 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.04 -0.45 5.88 -104.65 -0.62 -1.07 16 3 C -0.16 -1.62 9.35 -39.56 -0.37 -1.99 16 4 C -0.05 -0.48 5.88 -104.64 -0.62 -1.09 16 5 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 6 C -0.16 -1.99 9.64 -39.43 -0.38 -2.37 16 7 C 0.14 1.96 6.69 -39.22 -0.26 1.70 16 8 O -0.29 -4.66 9.67 -39.35 -0.38 -5.04 16 9 C 0.04 0.63 5.22 36.00 0.19 0.82 16 10 C 0.50 9.62 7.75 -10.98 -0.09 9.53 16 11 O -0.52 -12.08 13.91 -14.35 -0.20 -12.28 16 12 N -0.63 -12.57 4.90 -9.48 -0.05 -12.62 16 13 C 0.00 0.09 6.33 -83.17 -0.53 -0.43 16 14 C -0.07 -1.71 8.69 -39.44 -0.34 -2.05 16 15 C -0.24 -5.56 10.04 -39.36 -0.39 -5.95 16 16 C -0.09 -2.09 9.97 -39.99 -0.40 -2.49 16 17 C -0.21 -5.19 7.87 -39.28 -0.31 -5.50 16 18 C 0.09 2.33 5.32 -106.65 -0.57 1.77 16 19 C -0.53 -12.82 8.35 -37.86 -0.32 -13.14 16 20 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 21 C 0.04 0.97 4.95 -17.33 -0.09 0.88 16 22 N -0.79 -19.91 12.32 55.55 0.68 -19.23 16 23 Si 1.06 20.29 30.00 -169.99 -5.10 15.19 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -4.91 7.11 56.52 0.40 -4.50 16 27 C -0.22 -2.57 8.69 -39.43 -0.34 -2.91 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.09 1.02 7.65 -51.93 -0.40 0.62 16 37 H 0.09 1.12 7.68 -51.93 -0.40 0.72 16 38 H 0.40 6.97 7.95 -40.82 -0.32 6.65 16 39 H 0.11 2.66 6.20 -52.49 -0.33 2.33 16 40 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.78 6.45 -52.49 -0.34 2.44 16 43 H 0.30 7.77 6.62 -40.82 -0.27 7.50 16 44 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -30.42 369.84 -9.96 -40.38 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.78 Total: 13.31 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -4.70 Total: -25.29 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.64 Total: -31.84 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.58 Total: -17.32 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.10 Total: 15.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.42 -9.96 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582085989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.176 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds