Wall clock time and date at job start Tue Mar 31 2020 13:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 119.97242 * 2 1 4 4 C 1.38270 * 120.11117 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97283 * 179.97438 * 4 3 2 6 6 C 1.38144 * 120.05526 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.94401 * 359.97438 * 6 4 3 8 8 O 1.35905 * 120.05665 * 180.02562 * 7 6 4 9 9 C 1.42896 * 117.00186 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47069 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 C 1.38151 * 119.97088 * 180.22654 * 2 1 3 28 28 H 1.09001 * 109.46955 * 90.00278 * 1 2 3 29 29 H 1.09005 * 109.47551 * 210.00643 * 1 2 3 30 30 H 1.09007 * 109.47214 * 330.00525 * 1 2 3 31 31 H 1.07993 * 119.94864 * 359.96994 * 3 2 1 32 32 H 1.09002 * 109.47394 * 269.97925 * 5 4 3 33 33 H 1.08998 * 109.46969 * 29.97797 * 5 4 3 34 34 H 1.08999 * 109.46948 * 149.98067 * 5 4 3 35 35 H 1.07994 * 120.02763 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46992 * 59.99635 * 9 8 7 37 37 H 1.08999 * 109.47382 * 299.99989 * 9 8 7 38 38 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 39 39 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 40 40 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 41 41 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 44 44 H 1.08002 * 120.02670 * 0.02992 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5084 -0.0001 6 6 4.2752 0.0071 0.0016 7 6 3.5844 -1.1961 0.0027 8 8 4.2656 -2.3721 0.0043 9 6 3.4891 -3.5716 0.0059 10 6 4.4088 -4.7653 0.0068 11 8 5.6109 -4.6048 0.0067 12 7 3.8954 -6.0116 0.0089 13 6 4.7413 -7.1122 0.1017 14 6 5.9929 -7.0844 -0.4943 15 6 6.8270 -8.1828 -0.4035 16 6 6.4268 -9.3196 0.2864 17 6 5.2022 -9.3723 0.8865 18 6 4.3338 -8.2676 0.8091 19 6 3.0662 -8.3141 1.4262 20 1 2.5778 -7.3988 1.7265 21 6 2.4412 -9.5464 1.6491 22 7 2.7373 -10.5757 0.8974 23 14 1.1844 -9.7218 3.0199 24 1 0.6737 -11.1159 3.0479 25 1 1.8241 -9.4032 4.3217 26 1 0.0567 -8.7858 2.7803 27 6 2.1971 -1.1968 -0.0047 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6564 2.1322 -0.0005 32 1 4.5116 2.8227 -1.0279 33 1 3.7384 3.2667 0.5127 34 1 5.2825 2.3812 0.5145 35 1 5.3551 0.0102 0.0016 36 1 2.8602 -3.5985 -0.8841 37 1 2.8603 -3.5962 0.8959 38 1 2.9362 -6.1410 -0.0543 39 1 6.3143 -6.2057 -1.0338 40 1 7.7992 -8.1566 -0.8730 41 1 7.0903 -10.1694 0.3485 42 1 4.9002 -10.2608 1.4211 43 1 3.3303 -10.4667 0.1375 44 1 1.6570 -2.1321 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582085989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:49 Heat of formation + Delta-G solvation = -57.216456 kcal Electronic energy + Delta-G solvation = -26013.403392 eV Core-core repulsion = 22280.399397 eV Total energy + Delta-G solvation = -3733.003995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68696 -40.94142 -39.37725 -38.52267 -35.83126 -35.61697 -34.47708 -32.26382 -31.30191 -30.98910 -29.09999 -28.09321 -27.54932 -26.88469 -23.76404 -22.97465 -22.62543 -21.83617 -21.07360 -19.89333 -18.82519 -18.60311 -17.59726 -17.49323 -17.04969 -16.82748 -16.57615 -16.07875 -15.66181 -15.54089 -15.06899 -14.74770 -14.64713 -14.53954 -14.21706 -14.10173 -13.98418 -13.88744 -13.68160 -13.36805 -13.31342 -12.90194 -12.69715 -12.67923 -12.46917 -12.37036 -12.18955 -11.95727 -11.84392 -11.71268 -11.52346 -11.14104 -10.86261 -10.67023 -9.60911 -9.58052 -9.32205 -9.17793 -8.86904 -6.43822 0.31594 0.43564 0.69504 0.89173 1.47548 1.54331 1.64013 1.67406 1.82023 2.33713 2.68633 2.69605 2.71831 3.49386 3.55292 3.79304 3.86697 3.91562 4.00967 4.13240 4.29972 4.36867 4.38398 4.38450 4.46525 4.65212 4.66949 4.80753 4.81960 4.86036 4.91259 4.95617 5.03763 5.11413 5.24700 5.29290 5.34846 5.45778 5.53647 5.63210 5.65079 5.76322 5.82331 5.88229 5.99553 6.09774 6.31165 6.33690 6.55692 6.79504 6.88911 7.22036 8.04421 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002814 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.608479 B = 9949.277625 C =11631.327853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.164 4.164 4 C -0.048 4.048 5 C -0.113 4.113 6 C -0.182 4.182 7 C 0.115 3.885 8 O -0.320 6.320 9 C 0.055 3.945 10 C 0.497 3.503 11 O -0.563 6.563 12 N -0.627 5.627 13 C -0.001 4.001 14 C -0.088 4.088 15 C -0.243 4.243 16 C -0.094 4.094 17 C -0.227 4.227 18 C 0.066 3.934 19 C -0.541 4.541 20 H 0.084 0.916 21 C 0.008 3.992 22 N -0.812 5.812 23 Si 1.114 2.886 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.249 1.249 27 C -0.227 4.227 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.416 0.584 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.286 0.714 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 20.277 -1.247 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.201 4.201 7 C 0.070 3.930 8 O -0.233 6.233 9 C -0.023 4.023 10 C 0.285 3.715 11 O -0.442 6.442 12 N -0.272 5.272 13 C -0.095 4.095 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.112 4.112 17 C -0.247 4.247 18 C 0.062 3.938 19 C -0.569 4.569 20 H 0.102 0.898 21 C -0.210 4.210 22 N -0.435 5.435 23 Si 0.932 3.068 24 H -0.201 1.201 25 H -0.196 1.196 26 H -0.173 1.173 27 C -0.245 4.245 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.166 0.834 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.254 0.746 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.534 19.265 -0.526 21.077 hybrid contribution 1.131 0.358 -0.968 1.531 sum -7.403 19.623 -1.493 21.026 Atomic orbital electron populations 1.20884 0.88754 1.03995 1.03456 1.20085 0.97609 0.92000 0.95069 1.21171 0.93234 0.98582 1.05207 1.20021 0.94309 0.94816 0.95629 1.20867 1.00059 0.92559 1.03457 1.20476 1.00405 0.89991 1.09225 1.19299 0.91554 0.85139 0.96976 1.86106 1.35803 1.12362 1.89016 1.22451 0.92488 0.80996 1.06350 1.20789 0.89230 0.84651 0.76833 1.90666 1.17322 1.86076 1.50148 1.42583 1.10746 1.03207 1.70636 1.17714 0.94380 0.90717 1.06711 1.20877 0.93987 0.97639 0.98348 1.20594 1.01036 0.94793 1.09864 1.20674 0.95800 0.97455 0.97302 1.20807 0.95773 1.00208 1.07943 1.17803 0.94479 0.91442 0.90046 1.20545 1.02474 0.97070 1.36787 0.89775 1.28342 1.00715 0.90913 1.01011 1.70576 1.27166 1.33887 1.11888 0.83023 0.73741 0.77674 0.72397 1.20111 1.19597 1.17321 1.21367 0.92005 1.00518 1.10618 0.89878 0.90857 0.89856 0.83408 0.89875 0.89484 0.91286 0.86022 0.85986 0.86409 0.74635 0.87494 0.86579 0.86507 0.88484 0.90131 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.23 0.71 -0.61 16 2 C -0.05 -0.86 5.88 -19.88 -0.12 -0.97 16 3 C -0.16 -2.81 9.35 22.28 0.21 -2.60 16 4 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 5 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 6 C -0.18 -4.63 9.64 22.37 0.22 -4.42 16 7 C 0.12 3.15 6.69 22.51 0.15 3.30 16 8 O -0.32 -10.46 9.67 -73.44 -0.71 -11.17 16 9 C 0.06 1.52 5.22 71.23 0.37 1.90 16 10 C 0.50 19.22 7.75 87.65 0.68 19.90 16 11 O -0.56 -26.99 13.91 16.01 0.22 -26.77 16 12 N -0.63 -24.96 4.90 -302.28 -1.48 -26.45 16 13 C 0.00 -0.05 6.33 38.88 0.25 0.20 16 14 C -0.09 -4.32 8.69 22.36 0.19 -4.12 16 15 C -0.24 -11.28 10.04 22.42 0.22 -11.05 16 16 C -0.09 -4.37 9.97 22.01 0.22 -4.15 16 17 C -0.23 -11.62 7.87 22.47 0.18 -11.44 16 18 C 0.07 3.41 5.32 -21.18 -0.11 3.30 16 19 C -0.54 -26.42 8.35 23.38 0.20 -26.23 16 20 H 0.08 3.82 7.39 -2.91 -0.02 3.80 16 21 C 0.01 0.36 4.95 85.26 0.42 0.78 16 22 N -0.81 -41.36 12.32 21.83 0.27 -41.09 16 23 Si 1.11 39.80 30.00 68.60 2.06 41.86 16 24 H -0.28 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.25 -7.81 7.11 99.48 0.71 -7.11 16 27 C -0.23 -4.93 8.69 22.37 0.19 -4.73 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 30 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.12 2.54 7.65 -2.38 -0.02 2.53 16 37 H 0.12 2.63 7.68 -2.39 -0.02 2.61 16 38 H 0.42 14.09 7.95 -92.71 -0.74 13.36 16 39 H 0.11 5.27 6.20 -2.91 -0.02 5.25 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.10 5.11 6.45 -2.91 -0.02 5.09 16 43 H 0.29 15.24 6.62 -92.70 -0.61 14.63 16 44 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 Total: -1.00 -68.05 369.84 5.38 -62.67 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: 0.45 Total: 43.70 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 4.58 Total: -42.76 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.21 Total: -67.53 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.49 Total: -37.94 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.06 Total: 41.86 kcal Total: -68.05 5.38 -62.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582085989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.452 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds