Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38237 * 120.00306 * 269.72552 * 4 3 2 6 6 C 1.38234 * 119.99779 * 179.76848 * 5 4 3 7 7 C 1.38232 * 120.00101 * 0.50545 * 6 5 4 8 8 C 1.50701 * 120.00065 * 179.72283 * 7 6 5 9 9 C 1.53000 * 109.47630 * 240.02635 * 8 7 6 10 10 C 1.53001 * 109.47086 * 0.02721 * 8 7 6 11 11 C 1.53003 * 109.47114 * 120.02155 * 8 7 6 12 12 C 1.38235 * 120.00336 * 359.75076 * 7 6 5 13 13 C 1.38240 * 119.99560 * 90.00182 * 4 3 2 14 14 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 15 15 O 1.42097 * 104.27550 * 206.06816 * 14 2 1 16 16 O 1.42103 * 104.27486 * 333.92716 * 14 2 1 17 17 C 1.81404 * 104.45045 * 89.99736 * 14 2 1 18 18 C 1.50697 * 109.47143 * 179.97438 * 17 14 2 19 19 H 1.08006 * 120.00056 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99872 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99602 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47329 * 60.00196 * 22 20 18 24 24 H 1.48504 * 109.46740 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47342 * 299.99806 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07991 * 119.99496 * 0.02562 * 5 4 3 32 32 H 1.08000 * 119.99767 * 180.23413 * 6 5 4 33 33 H 1.08998 * 109.46981 * 59.99146 * 9 8 7 34 34 H 1.08993 * 109.47566 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.46434 * 299.99862 * 9 8 7 36 36 H 1.09004 * 109.47319 * 59.99353 * 10 8 7 37 37 H 1.08997 * 109.47255 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.46858 * 299.99542 * 10 8 7 39 39 H 1.08998 * 109.46867 * 60.00289 * 11 8 7 40 40 H 1.08997 * 109.46774 * 179.97438 * 11 8 7 41 41 H 1.08996 * 109.47133 * 300.00687 * 11 8 7 42 42 H 1.08000 * 120.00185 * 179.97438 * 12 7 6 43 43 H 1.07993 * 120.00261 * 0.02562 * 13 4 3 44 44 H 1.09002 * 109.47042 * 299.99928 * 17 14 2 45 45 H 1.09000 * 109.47032 * 60.00128 * 17 14 2 46 46 H 0.97002 * 119.99894 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3776 2.5944 1.9584 6 6 1.5072 3.0463 3.2583 7 6 2.6060 2.6778 4.0118 8 6 2.7505 3.1755 5.4269 9 6 4.0419 3.9863 5.5531 10 6 1.5549 4.0624 5.7802 11 6 2.8014 1.9831 6.3842 12 6 3.5727 1.8533 3.4671 13 6 3.4404 1.3972 2.1688 14 16 2.2930 -1.4342 -0.0006 15 8 3.5395 -1.1194 0.6047 16 8 1.3969 -2.3564 0.6042 17 6 2.5193 -1.8255 -1.7575 18 6 3.2703 -3.1252 -1.8899 19 1 3.5802 -3.6624 -1.0057 20 6 3.5619 -3.6285 -3.1400 21 7 3.1842 -2.9747 -4.2167 22 14 4.4924 -5.2400 -3.3041 23 1 3.7191 -6.3269 -2.6512 24 1 4.6777 -5.5603 -4.7423 25 1 5.8193 -5.1144 -2.6495 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3684 32 1 0.7522 3.6908 3.6838 33 1 4.0057 4.8358 4.8711 34 1 4.1466 4.3459 6.5767 35 1 4.8936 3.3544 5.3015 36 1 0.6349 3.4848 5.6902 37 1 1.6596 4.4228 6.8035 38 1 1.5187 4.9120 5.0982 39 1 3.6531 1.3512 6.1326 40 1 2.9063 2.3431 7.4076 41 1 1.8814 1.4055 6.2943 42 1 4.4314 1.5658 4.0556 43 1 4.1959 0.7536 1.7430 44 1 1.5450 -1.9178 -2.2375 45 1 3.0866 -1.0279 -2.2372 46 1 3.3897 -3.3286 -5.0961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582282410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = -66.525193 kcal Electronic energy + Delta-G solvation = -25938.436540 eV Core-core repulsion = 22340.472839 eV Total energy + Delta-G solvation = -3597.963701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89049 -37.18081 -36.15381 -35.23538 -34.90175 -33.35646 -30.96718 -30.62536 -29.01964 -27.54048 -27.39961 -26.94619 -24.50888 -23.41760 -22.19459 -21.72446 -19.18875 -18.22274 -17.24842 -16.71227 -16.24129 -15.75899 -15.53981 -15.13518 -14.85957 -14.47069 -14.40218 -14.04771 -13.97462 -13.72921 -13.30928 -13.16220 -12.76772 -12.62949 -12.37094 -12.27828 -12.11120 -12.06384 -11.86297 -11.77802 -11.68387 -11.45143 -11.35985 -11.13074 -11.11217 -10.94444 -10.89629 -10.87155 -10.63592 -10.61897 -10.42195 -9.87002 -9.38382 -8.72135 -8.71038 -8.58477 -8.35337 -6.34496 -4.45458 1.20938 1.53597 1.61494 3.22664 3.24886 3.29654 3.47849 3.97527 4.23156 4.48244 4.62152 4.82827 4.84276 4.93727 4.97006 5.06915 5.12407 5.15772 5.19001 5.24891 5.37727 5.44845 5.54104 5.58180 5.65153 5.69646 5.70732 5.74419 5.80093 5.83174 5.90377 5.91355 6.04849 6.12110 6.14667 6.17873 6.18861 6.34962 6.59409 6.62289 6.76887 6.78025 6.87045 7.03532 7.21553 7.42573 7.73993 8.56664 9.22379 10.77201 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.002957 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.871022 B = 9467.090748 C = 9897.667399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.008 6.008 3 C 0.167 3.833 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.074 4.074 8 C -0.030 4.030 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.121 4.121 13 C -0.092 4.092 14 S 2.580 3.420 15 O -0.974 6.974 16 O -0.978 6.978 17 C -0.419 4.419 18 C -0.535 4.535 19 H 0.068 0.932 20 C 0.077 3.923 21 N -0.879 5.879 22 Si 0.903 3.097 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.118 0.882 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 15.426 13.833 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.842 5.842 3 C 0.041 3.959 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.150 4.150 7 C -0.074 4.074 8 C -0.030 4.030 9 C -0.195 4.195 10 C -0.199 4.199 11 C -0.196 4.196 12 C -0.139 4.139 13 C -0.110 4.110 14 S 2.681 3.319 15 O -0.965 6.965 16 O -0.969 6.969 17 C -0.555 4.555 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.130 4.130 21 N -0.515 5.515 22 Si 0.729 3.271 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.194 14.989 14.432 21.051 hybrid contribution 0.235 -0.628 -0.872 1.100 sum -2.959 14.361 13.560 19.972 Atomic orbital electron populations 1.21327 0.79335 1.02468 1.01400 1.57829 1.14633 1.21178 1.90606 1.20093 0.97476 0.85826 0.92494 1.20333 0.95204 0.97965 0.97530 1.20989 0.98245 0.97675 0.95328 1.21050 0.98098 1.01487 0.94327 1.19779 0.94990 0.97722 0.94942 1.19490 0.96124 0.95524 0.91834 1.21879 0.96353 0.99820 1.01404 1.21946 0.97525 0.99319 1.01131 1.21895 1.02405 0.97186 0.98158 1.20984 0.99057 0.98321 0.95568 1.21514 0.98104 0.97561 0.93836 1.06105 0.73269 0.72010 0.80511 1.93428 1.44001 1.82738 1.76300 1.93469 1.65052 1.61922 1.76440 1.27762 1.06430 1.06220 1.15079 1.20290 1.38585 1.04571 0.94012 0.91365 1.24925 0.94926 0.97886 0.95217 1.69942 1.44598 1.38876 0.98096 0.86449 0.80542 0.82641 0.77456 1.19404 1.20678 1.19375 0.93293 0.91742 0.91075 0.89183 0.90089 0.86461 0.86080 0.92549 0.92577 0.92328 0.92301 0.92604 0.92342 0.92283 0.92551 0.92462 0.86405 0.83927 0.89926 0.89833 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.24 59.85 0.61 2.04 16 2 N -1.01 -16.91 3.10 -123.04 -0.38 -17.30 16 3 C 0.17 2.42 5.44 -5.19 -0.03 2.39 16 4 C -0.11 -1.59 5.46 -104.62 -0.57 -2.16 16 5 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 6 C -0.13 -1.56 8.98 -39.59 -0.36 -1.91 16 7 C -0.07 -0.89 4.76 -104.62 -0.50 -1.39 16 8 C -0.03 -0.28 0.85 -155.66 -0.13 -0.42 16 9 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 10 C -0.14 -1.15 7.13 37.16 0.27 -0.88 16 11 C -0.14 -1.30 8.29 37.16 0.31 -1.00 16 12 C -0.12 -1.66 8.71 -39.58 -0.34 -2.00 16 13 C -0.09 -1.43 9.12 -39.58 -0.36 -1.80 16 14 S 2.58 55.42 5.24 -107.50 -0.56 54.86 16 15 O -0.97 -22.08 14.82 -57.54 -0.85 -22.93 16 16 O -0.98 -23.64 17.09 -57.54 -0.98 -24.62 16 17 C -0.42 -10.12 5.93 36.00 0.21 -9.90 16 18 C -0.54 -14.81 9.13 -34.44 -0.31 -15.12 16 19 H 0.07 1.86 7.71 -52.48 -0.40 1.45 16 20 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 21 N -0.88 -24.79 13.29 55.43 0.74 -24.06 16 22 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 28 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 29 H 0.09 1.33 7.55 -51.93 -0.39 0.94 16 30 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.17 5.90 -52.49 -0.31 0.86 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 36 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 39 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.12 1.44 7.10 -52.49 -0.37 1.07 16 43 H 0.14 2.45 6.48 -52.49 -0.34 2.11 16 44 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 45 H 0.08 1.98 8.14 -51.92 -0.42 1.56 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -32.73 381.57 -10.23 -42.96 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.53 Total: 2.11 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: -1.38 Total: -32.70 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.36 Total: -41.35 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.84 Total: -47.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.56 Total: 54.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.73 -10.23 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582282410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.565 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds