Wall clock time and date at job start Tue Mar 31 2020 14:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38237 * 120.00306 * 269.72552 * 4 3 2 6 6 C 1.38234 * 119.99779 * 179.76848 * 5 4 3 7 7 C 1.38232 * 120.00101 * 0.50545 * 6 5 4 8 8 C 1.50701 * 120.00065 * 179.72283 * 7 6 5 9 9 C 1.53000 * 109.47630 * 240.02635 * 8 7 6 10 10 C 1.53001 * 109.47086 * 0.02721 * 8 7 6 11 11 C 1.53003 * 109.47114 * 120.02155 * 8 7 6 12 12 C 1.38235 * 120.00336 * 359.75076 * 7 6 5 13 13 C 1.38240 * 119.99560 * 90.00182 * 4 3 2 14 14 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 15 15 O 1.42097 * 104.27550 * 206.06816 * 14 2 1 16 16 O 1.42103 * 104.27486 * 333.92716 * 14 2 1 17 17 C 1.81404 * 104.45045 * 89.99736 * 14 2 1 18 18 C 1.50697 * 109.47143 * 179.97438 * 17 14 2 19 19 H 1.08006 * 120.00056 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99872 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99602 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47329 * 60.00196 * 22 20 18 24 24 H 1.48504 * 109.46740 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47342 * 299.99806 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07991 * 119.99496 * 0.02562 * 5 4 3 32 32 H 1.08000 * 119.99767 * 180.23413 * 6 5 4 33 33 H 1.08998 * 109.46981 * 59.99146 * 9 8 7 34 34 H 1.08993 * 109.47566 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.46434 * 299.99862 * 9 8 7 36 36 H 1.09004 * 109.47319 * 59.99353 * 10 8 7 37 37 H 1.08997 * 109.47255 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.46858 * 299.99542 * 10 8 7 39 39 H 1.08998 * 109.46867 * 60.00289 * 11 8 7 40 40 H 1.08997 * 109.46774 * 179.97438 * 11 8 7 41 41 H 1.08996 * 109.47133 * 300.00687 * 11 8 7 42 42 H 1.08000 * 120.00185 * 179.97438 * 12 7 6 43 43 H 1.07993 * 120.00261 * 0.02562 * 13 4 3 44 44 H 1.09002 * 109.47042 * 299.99928 * 17 14 2 45 45 H 1.09000 * 109.47032 * 60.00128 * 17 14 2 46 46 H 0.97002 * 119.99894 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3776 2.5944 1.9584 6 6 1.5072 3.0463 3.2583 7 6 2.6060 2.6778 4.0118 8 6 2.7505 3.1755 5.4269 9 6 4.0419 3.9863 5.5531 10 6 1.5549 4.0624 5.7802 11 6 2.8014 1.9831 6.3842 12 6 3.5727 1.8533 3.4671 13 6 3.4404 1.3972 2.1688 14 16 2.2930 -1.4342 -0.0006 15 8 3.5395 -1.1194 0.6047 16 8 1.3969 -2.3564 0.6042 17 6 2.5193 -1.8255 -1.7575 18 6 3.2703 -3.1252 -1.8899 19 1 3.5802 -3.6624 -1.0057 20 6 3.5619 -3.6285 -3.1400 21 7 3.1842 -2.9747 -4.2167 22 14 4.4924 -5.2400 -3.3041 23 1 3.7191 -6.3269 -2.6512 24 1 4.6777 -5.5603 -4.7423 25 1 5.8193 -5.1144 -2.6495 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3684 32 1 0.7522 3.6908 3.6838 33 1 4.0057 4.8358 4.8711 34 1 4.1466 4.3459 6.5767 35 1 4.8936 3.3544 5.3015 36 1 0.6349 3.4848 5.6902 37 1 1.6596 4.4228 6.8035 38 1 1.5187 4.9120 5.0982 39 1 3.6531 1.3512 6.1326 40 1 2.9063 2.3431 7.4076 41 1 1.8814 1.4055 6.2943 42 1 4.4314 1.5658 4.0556 43 1 4.1959 0.7536 1.7430 44 1 1.5450 -1.9178 -2.2375 45 1 3.0866 -1.0279 -2.2372 46 1 3.3897 -3.3286 -5.0961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582282410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:01 Heat of formation + Delta-G solvation = -85.897370 kcal Electronic energy + Delta-G solvation = -25939.276580 eV Core-core repulsion = 22340.472839 eV Total energy + Delta-G solvation = -3598.803742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83719 -38.23716 -37.92545 -36.79478 -36.27345 -35.42243 -31.95276 -31.67347 -31.03268 -28.26320 -28.09797 -27.99859 -25.89164 -25.27830 -23.18742 -22.74426 -20.07518 -19.77323 -19.13288 -18.17668 -17.63273 -17.40935 -17.00321 -16.25638 -16.14295 -15.88978 -15.56041 -15.13306 -15.09609 -14.58743 -14.49181 -14.27567 -14.23668 -14.03241 -13.81202 -13.58722 -13.44965 -13.23262 -13.00156 -12.91582 -12.88443 -12.73820 -12.64479 -12.61656 -12.53776 -12.52886 -12.29973 -12.05873 -11.84338 -11.79443 -11.52039 -11.30483 -11.17100 -10.79633 -9.93376 -9.73413 -9.42697 -8.43019 -6.61565 -0.46755 0.44854 0.58303 1.36105 1.39202 1.47464 1.97999 2.30263 2.89509 2.91709 3.07936 3.42521 3.68467 3.77878 3.89430 4.02593 4.14358 4.19738 4.23089 4.42356 4.48435 4.59813 4.65022 4.69956 4.72866 4.75431 4.78171 4.79110 4.88796 4.91525 4.97294 5.02742 5.04777 5.05040 5.09073 5.19805 5.27195 5.28142 5.31709 5.41123 5.44582 5.64037 5.69073 5.70774 5.79456 5.84667 6.19713 6.48655 7.10088 8.69295 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.002957 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.871022 B = 9467.090748 C = 9897.667399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.000 6.000 3 C 0.160 3.840 4 C -0.125 4.125 5 C -0.101 4.101 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.031 4.031 9 C -0.136 4.136 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.133 4.133 13 C -0.120 4.120 14 S 2.611 3.389 15 O -0.990 6.990 16 O -1.006 7.006 17 C -0.432 4.432 18 C -0.569 4.569 19 H 0.061 0.939 20 C 0.027 3.973 21 N -0.907 5.907 22 Si 0.961 3.039 23 H -0.263 1.263 24 H -0.267 1.267 25 H -0.262 1.262 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 17.150 14.922 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.838 5.838 3 C 0.035 3.965 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.031 4.031 9 C -0.193 4.193 10 C -0.197 4.197 11 C -0.197 4.197 12 C -0.151 4.151 13 C -0.139 4.139 14 S 2.710 3.290 15 O -0.980 6.980 16 O -0.997 6.997 17 C -0.565 4.565 18 C -0.608 4.608 19 H 0.079 0.921 20 C -0.176 4.176 21 N -0.543 5.543 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.187 1.187 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.385 16.706 15.502 23.208 hybrid contribution 0.574 -1.044 -1.135 1.646 sum -3.811 15.661 14.367 21.592 Atomic orbital electron populations 1.21632 0.77272 1.04211 1.02355 1.57444 1.15853 1.20316 1.90181 1.20367 0.97408 0.85279 0.93419 1.20370 0.95700 0.99169 0.97438 1.21297 0.98231 0.96507 0.95878 1.21436 0.98309 1.01151 0.94045 1.20125 0.94364 0.96590 0.96297 1.19572 0.97465 0.95908 0.90136 1.21867 0.95519 0.99460 1.02450 1.21936 0.96501 0.99069 1.02209 1.21902 1.01497 0.97024 0.99258 1.21095 1.00006 0.99000 0.95023 1.21466 0.98622 0.98673 0.95169 1.04879 0.72840 0.72634 0.78640 1.93413 1.45456 1.83277 1.75884 1.93422 1.65783 1.64125 1.76340 1.27826 1.05526 1.04926 1.18240 1.20717 1.39548 1.06256 0.94281 0.92062 1.25816 0.95652 1.01308 0.94872 1.70013 1.45372 1.40379 0.98583 0.85564 0.79410 0.78538 0.78233 1.18779 1.19150 1.18689 0.92740 0.87509 0.91913 0.90369 0.86169 0.83630 0.83353 0.92583 0.90890 0.93178 0.92293 0.91169 0.91723 0.93335 0.90686 0.93315 0.86104 0.86732 0.90510 0.90246 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.24 127.77 1.31 3.68 16 2 N -1.00 -32.91 3.10 -543.20 -1.68 -34.59 16 3 C 0.16 4.48 5.44 85.63 0.47 4.95 16 4 C -0.12 -3.56 5.46 -19.87 -0.11 -3.67 16 5 C -0.10 -2.27 9.70 22.27 0.22 -2.05 16 6 C -0.13 -2.76 8.98 22.27 0.20 -2.56 16 7 C -0.07 -1.67 4.76 -19.87 -0.09 -1.76 16 8 C -0.03 -0.52 0.85 -52.93 -0.05 -0.57 16 9 C -0.14 -2.07 8.29 71.98 0.60 -1.48 16 10 C -0.14 -1.81 7.13 71.98 0.51 -1.29 16 11 C -0.14 -2.41 8.29 71.98 0.60 -1.81 16 12 C -0.13 -3.68 8.71 22.27 0.19 -3.48 16 13 C -0.12 -3.88 9.12 22.27 0.20 -3.68 16 14 S 2.61 114.99 5.24 -56.49 -0.30 114.69 16 15 O -0.99 -46.65 14.82 -127.65 -1.89 -48.54 16 16 O -1.01 -49.60 17.09 -127.65 -2.18 -51.78 16 17 C -0.43 -21.55 5.93 71.23 0.42 -21.13 16 18 C -0.57 -32.42 9.13 25.60 0.23 -32.19 16 19 H 0.06 3.46 7.71 -2.91 -0.02 3.43 16 20 C 0.03 1.50 5.46 84.66 0.46 1.97 16 21 N -0.91 -51.86 13.29 21.45 0.28 -51.58 16 22 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.11 1.91 7.94 -2.38 -0.02 1.90 16 28 H 0.06 1.76 7.79 -2.39 -0.02 1.75 16 29 H 0.08 2.36 7.55 -2.39 -0.02 2.34 16 30 H 0.12 2.41 7.91 -2.39 -0.02 2.39 16 31 H 0.15 2.41 8.06 -2.92 -0.02 2.38 16 32 H 0.15 2.27 5.90 -2.91 -0.02 2.25 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.84 7.39 -2.39 -0.02 0.82 16 36 H 0.06 0.77 7.51 -2.38 -0.02 0.75 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.76 7.51 -2.39 -0.02 0.75 16 39 H 0.05 0.92 7.39 -2.39 -0.02 0.90 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.12 3.09 7.10 -2.91 -0.02 3.07 16 43 H 0.11 4.25 6.48 -2.91 -0.02 4.23 16 44 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.08 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.06 381.57 2.37 -69.69 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.95 Total: 22.12 kcal Atomic # 6 Polarization: -70.24 SS G_CDS: 5.16 Total: -65.07 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.40 Total: -86.17 kcal Atomic # 8 Polarization: -96.24 SS G_CDS: -4.07 Total: -100.32 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 114.99 SS G_CDS: -0.30 Total: 114.69 kcal Total: -72.06 2.37 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582282410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds