Wall clock time and date at job start Tue Mar 31 2020 15:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 C 1.52999 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47291 * 305.00494 * 4 3 2 6 6 C 1.52997 * 109.47236 * 185.00044 * 4 3 2 7 7 S 1.81405 * 109.46909 * 65.00472 * 4 3 2 8 8 O 1.42100 * 110.54164 * 295.34513 * 7 4 3 9 9 O 1.42100 * 110.54318 * 72.09429 * 7 4 3 10 10 N 1.65600 * 104.45051 * 183.71871 * 7 4 3 11 11 C 1.46503 * 119.99549 * 67.29910 * 10 7 4 12 12 H 1.09002 * 109.47624 * 334.09103 * 11 10 7 13 13 C 1.53004 * 109.46792 * 214.09085 * 11 10 7 14 14 C 1.50699 * 109.47272 * 66.04574 * 13 11 10 15 15 H 1.07999 * 119.99752 * 5.03607 * 14 13 11 16 16 C 1.37877 * 120.00050 * 185.03615 * 14 13 11 17 17 N 1.31513 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99869 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47160 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.46914 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47212 * 299.99804 * 18 16 14 22 22 C 1.50695 * 109.46848 * 94.09376 * 11 10 7 23 23 C 1.38235 * 120.00334 * 39.72608 * 22 11 10 24 24 C 1.38232 * 119.99922 * 179.78819 * 23 22 11 25 25 C 1.38233 * 120.00350 * 0.44034 * 24 23 22 26 26 C 1.38240 * 119.99725 * 359.81026 * 25 24 23 27 27 C 1.38229 * 119.99932 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.46984 * 299.99639 * 1 2 3 29 29 H 1.08999 * 109.47428 * 59.99517 * 1 2 3 30 30 H 1.08993 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47428 * 120.00483 * 2 1 3 32 32 H 1.08999 * 109.46792 * 240.00532 * 2 1 3 33 33 H 1.08999 * 109.47282 * 300.00572 * 3 2 1 34 34 H 1.09008 * 109.46815 * 60.00257 * 3 2 1 35 35 H 1.09005 * 109.47305 * 56.46094 * 6 4 3 36 36 H 1.09000 * 109.47327 * 176.45975 * 6 4 3 37 37 H 1.08998 * 109.47514 * 296.46031 * 6 4 3 38 38 H 0.96995 * 119.99961 * 247.30033 * 10 7 4 39 39 H 1.09003 * 109.47139 * 186.04695 * 13 11 10 40 40 H 1.08999 * 109.46916 * 306.04093 * 13 11 10 41 41 H 0.96998 * 119.99342 * 179.97438 * 17 16 14 42 42 H 1.08000 * 119.99746 * 359.97438 * 23 22 11 43 43 H 1.08007 * 119.99789 * 180.26957 * 24 23 22 44 44 H 1.08004 * 120.00501 * 179.83315 * 25 24 23 45 45 H 1.07997 * 119.99990 * 180.02562 * 26 25 24 46 46 H 1.08007 * 119.99846 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0800 2.8795 0.1264 7 16 4.1753 0.7196 -1.5491 8 8 3.8045 -0.6493 -1.6391 9 8 3.9562 1.6107 -2.6341 10 7 5.8217 0.6861 -1.3742 11 6 6.4348 -0.1991 -0.3808 12 1 5.7231 -0.3928 0.4218 13 6 7.6843 0.4697 0.1960 14 6 7.2831 1.6934 0.9787 15 1 6.2378 1.9217 1.1256 16 6 8.2506 2.5215 1.5072 17 7 9.5235 2.2431 1.3287 18 14 7.7533 4.0379 2.4781 19 1 6.9481 3.6290 3.6569 20 1 8.9711 4.7541 2.9355 21 1 6.9455 4.9358 1.6142 22 6 6.8189 -1.5003 -1.0366 23 6 7.3579 -1.5002 -2.3095 24 6 7.7143 -2.6936 -2.9093 25 6 7.5233 -3.8878 -2.2398 26 6 6.9795 -3.8883 -0.9689 27 6 6.6272 -2.6947 -0.3673 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.6654 3.3348 1.0258 36 1 5.1681 2.8746 0.1901 37 1 3.7698 3.4529 -0.7471 38 1 6.3800 1.2525 -1.9295 39 1 8.1998 -0.2297 0.8541 40 1 8.3490 0.7604 -0.6174 41 1 10.2040 2.8259 1.7003 42 1 7.5034 -0.5675 -2.8342 43 1 8.1395 -2.6931 -3.9022 44 1 7.7992 -4.8204 -2.7095 45 1 6.8306 -4.8213 -0.4456 46 1 6.2020 -2.6951 0.6255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582790035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:05 Heat of formation + Delta-G solvation = -74.300673 kcal Electronic energy + Delta-G solvation = -27008.690769 eV Core-core repulsion = 23410.389898 eV Total energy + Delta-G solvation = -3598.300871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.01551 -36.78075 -36.45459 -35.76512 -35.54653 -32.72473 -32.13379 -30.66634 -30.27332 -28.62660 -26.75736 -24.79184 -22.57943 -22.25098 -21.93706 -21.42166 -20.22379 -18.74752 -17.61084 -17.00205 -16.34555 -16.22195 -15.60714 -14.88106 -14.75183 -14.73191 -14.51275 -14.22261 -13.64393 -13.41927 -13.19518 -13.00213 -12.89194 -12.67669 -12.54113 -12.31743 -12.11474 -12.09282 -11.93334 -11.64623 -11.56120 -11.24246 -11.20644 -11.03869 -10.86035 -10.85120 -10.76298 -10.68225 -10.61904 -10.43952 -10.08508 -9.78735 -9.25344 -8.82035 -8.52070 -8.46377 -8.16200 -6.14281 -4.18100 0.66751 1.81793 1.85096 3.17370 3.21760 3.27795 3.29312 4.08845 4.24363 4.33364 4.43900 4.58544 4.83962 4.93623 5.20409 5.21887 5.25945 5.28664 5.31814 5.37996 5.44334 5.53626 5.59153 5.67974 5.73143 5.77404 5.90877 5.95062 5.96526 5.98936 6.05780 6.16672 6.19789 6.30620 6.36649 6.45703 6.49725 6.57803 6.87064 6.89462 7.12143 7.41815 7.44462 7.53920 7.68517 7.82962 8.19955 8.86279 9.46074 10.96314 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007783 B = 0.007079 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3596.575137 B = 3954.194469 C = 6584.141018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C -0.104 4.104 4 C -0.589 4.589 5 H 0.138 0.862 6 C -0.151 4.151 7 S 2.608 3.392 8 O -0.956 6.956 9 O -0.971 6.971 10 N -1.092 6.092 11 C 0.196 3.804 12 H 0.077 0.923 13 C 0.025 3.975 14 C -0.527 4.527 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.073 4.073 23 C -0.103 4.103 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.110 4.110 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 -5.670 -3.175 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C -0.143 4.143 4 C -0.698 4.698 5 H 0.156 0.844 6 C -0.209 4.209 7 S 2.700 3.300 8 O -0.946 6.946 9 O -0.961 6.961 10 N -0.850 5.850 11 C 0.089 3.911 12 H 0.095 0.905 13 C -0.013 4.013 14 C -0.564 4.564 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.075 4.075 23 C -0.121 4.121 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.914 -6.004 -3.763 13.012 hybrid contribution 0.273 1.389 1.154 1.826 sum -10.641 -4.616 -2.609 11.888 Atomic orbital electron populations 1.21729 0.95337 1.01876 1.01713 1.22068 0.96856 0.96225 1.04718 1.21465 0.90511 0.98105 1.04173 1.30365 1.05298 1.10032 1.24119 0.84442 1.21822 1.04777 0.90996 1.03275 1.05078 0.73691 0.74794 0.76417 1.93561 1.82234 1.32626 1.86205 1.93542 1.84839 1.67577 1.50133 1.55318 1.24525 1.54563 1.50632 1.19964 0.98793 0.85050 0.87263 0.90510 1.19411 0.90245 0.95201 0.96468 1.21196 0.92993 1.08474 1.33783 0.91738 1.24955 0.94961 0.97766 0.96203 1.69937 0.99536 1.38137 1.45046 0.86812 0.78124 0.83393 0.80693 1.20177 1.21265 1.19926 1.20484 0.96886 0.95510 0.94600 1.20919 0.98269 0.97857 0.95057 1.21061 1.00735 0.92790 0.99692 1.20996 1.01064 0.97614 0.95489 1.21005 0.99895 0.97635 0.95534 1.20963 1.00142 0.91979 0.99806 0.92738 0.92702 0.92400 0.90891 0.89531 0.91060 0.89772 0.91164 0.88081 0.91556 0.74742 0.95233 0.94914 0.92766 0.86328 0.86687 0.86863 0.86647 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.16 -1.98 5.62 -26.73 -0.15 -2.13 16 3 C -0.10 -1.28 4.68 -26.73 -0.13 -1.40 16 4 C -0.59 -8.43 2.89 -26.73 -0.08 -8.51 16 5 H 0.14 1.87 7.49 -51.92 -0.39 1.49 16 6 C -0.15 -2.25 8.87 37.16 0.33 -1.92 16 7 S 2.61 43.53 4.58 -107.50 -0.49 43.04 16 8 O -0.96 -17.46 15.14 -57.54 -0.87 -18.33 16 9 O -0.97 -18.29 17.74 -57.54 -1.02 -19.31 16 10 N -1.09 -18.87 4.35 -5.88 -0.03 -18.90 16 11 C 0.20 3.62 2.19 -69.08 -0.15 3.46 16 12 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 13 C 0.03 0.56 4.54 -27.88 -0.13 0.43 16 14 C -0.53 -12.59 8.58 -34.44 -0.30 -12.89 16 15 H 0.06 1.41 5.19 -52.49 -0.27 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 18 Si 0.88 19.75 29.54 -169.99 -5.02 14.73 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.07 -1.31 4.83 -104.62 -0.51 -1.81 16 23 C -0.10 -1.76 9.33 -39.58 -0.37 -2.13 16 24 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 25 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 27 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16 28 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.21 5.44 -51.93 -0.28 0.93 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.72 5.52 -51.93 -0.29 1.43 16 37 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 38 H 0.42 6.98 8.62 -34.47 -0.30 6.69 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.12 1.93 7.58 -52.49 -0.40 1.53 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.77 8.04 -52.48 -0.42 1.35 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -30.30 381.36 -11.06 -41.36 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.34 Total: 10.91 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -2.78 Total: -35.51 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.71 Total: -42.63 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.89 Total: -37.64 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.49 Total: 43.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.30 -11.06 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.937 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds