Wall clock time and date at job start Tue Mar 31 2020 15:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 C 1.52999 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47291 * 305.00494 * 4 3 2 6 6 C 1.52997 * 109.47236 * 185.00044 * 4 3 2 7 7 S 1.81405 * 109.46909 * 65.00472 * 4 3 2 8 8 O 1.42100 * 110.54164 * 295.34513 * 7 4 3 9 9 O 1.42100 * 110.54318 * 72.09429 * 7 4 3 10 10 N 1.65600 * 104.45051 * 183.71871 * 7 4 3 11 11 C 1.46503 * 119.99549 * 67.29910 * 10 7 4 12 12 H 1.09002 * 109.47624 * 334.09103 * 11 10 7 13 13 C 1.53004 * 109.46792 * 214.09085 * 11 10 7 14 14 C 1.50699 * 109.47272 * 66.04574 * 13 11 10 15 15 H 1.07999 * 119.99752 * 5.03607 * 14 13 11 16 16 C 1.37877 * 120.00050 * 185.03615 * 14 13 11 17 17 N 1.31513 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99869 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47160 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.46914 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47212 * 299.99804 * 18 16 14 22 22 C 1.50695 * 109.46848 * 94.09376 * 11 10 7 23 23 C 1.38235 * 120.00334 * 39.72608 * 22 11 10 24 24 C 1.38232 * 119.99922 * 179.78819 * 23 22 11 25 25 C 1.38233 * 120.00350 * 0.44034 * 24 23 22 26 26 C 1.38240 * 119.99725 * 359.81026 * 25 24 23 27 27 C 1.38229 * 119.99932 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.46984 * 299.99639 * 1 2 3 29 29 H 1.08999 * 109.47428 * 59.99517 * 1 2 3 30 30 H 1.08993 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47428 * 120.00483 * 2 1 3 32 32 H 1.08999 * 109.46792 * 240.00532 * 2 1 3 33 33 H 1.08999 * 109.47282 * 300.00572 * 3 2 1 34 34 H 1.09008 * 109.46815 * 60.00257 * 3 2 1 35 35 H 1.09005 * 109.47305 * 56.46094 * 6 4 3 36 36 H 1.09000 * 109.47327 * 176.45975 * 6 4 3 37 37 H 1.08998 * 109.47514 * 296.46031 * 6 4 3 38 38 H 0.96995 * 119.99961 * 247.30033 * 10 7 4 39 39 H 1.09003 * 109.47139 * 186.04695 * 13 11 10 40 40 H 1.08999 * 109.46916 * 306.04093 * 13 11 10 41 41 H 0.96998 * 119.99342 * 179.97438 * 17 16 14 42 42 H 1.08000 * 119.99746 * 359.97438 * 23 22 11 43 43 H 1.08007 * 119.99789 * 180.26957 * 24 23 22 44 44 H 1.08004 * 120.00501 * 179.83315 * 25 24 23 45 45 H 1.07997 * 119.99990 * 180.02562 * 26 25 24 46 46 H 1.08007 * 119.99846 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0800 2.8795 0.1264 7 16 4.1753 0.7196 -1.5491 8 8 3.8045 -0.6493 -1.6391 9 8 3.9562 1.6107 -2.6341 10 7 5.8217 0.6861 -1.3742 11 6 6.4348 -0.1991 -0.3808 12 1 5.7231 -0.3928 0.4218 13 6 7.6843 0.4697 0.1960 14 6 7.2831 1.6934 0.9787 15 1 6.2378 1.9217 1.1256 16 6 8.2506 2.5215 1.5072 17 7 9.5235 2.2431 1.3287 18 14 7.7533 4.0379 2.4781 19 1 6.9481 3.6290 3.6569 20 1 8.9711 4.7541 2.9355 21 1 6.9455 4.9358 1.6142 22 6 6.8189 -1.5003 -1.0366 23 6 7.3579 -1.5002 -2.3095 24 6 7.7143 -2.6936 -2.9093 25 6 7.5233 -3.8878 -2.2398 26 6 6.9795 -3.8883 -0.9689 27 6 6.6272 -2.6947 -0.3673 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.6654 3.3348 1.0258 36 1 5.1681 2.8746 0.1901 37 1 3.7698 3.4529 -0.7471 38 1 6.3800 1.2525 -1.9295 39 1 8.1998 -0.2297 0.8541 40 1 8.3490 0.7604 -0.6174 41 1 10.2040 2.8259 1.7003 42 1 7.5034 -0.5675 -2.8342 43 1 8.1395 -2.6931 -3.9022 44 1 7.7992 -4.8204 -2.7095 45 1 6.8306 -4.8213 -0.4456 46 1 6.2020 -2.6951 0.6255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582790035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:04 Heat of formation + Delta-G solvation = -91.829773 kcal Electronic energy + Delta-G solvation = -27009.450888 eV Core-core repulsion = 23410.389898 eV Total energy + Delta-G solvation = -3599.060990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28681 -38.16570 -37.54721 -37.18216 -36.92226 -34.59717 -33.15515 -31.93609 -31.51157 -30.33543 -27.75928 -26.42493 -23.82790 -23.64757 -23.24700 -22.36994 -21.61352 -20.07566 -18.98906 -18.51556 -17.81519 -17.56578 -17.02392 -16.46820 -16.03139 -15.95753 -15.75413 -15.35336 -14.97400 -14.56349 -14.43484 -14.25128 -14.16952 -14.10792 -13.89257 -13.61771 -13.52923 -13.24131 -13.10502 -12.99182 -12.93087 -12.86103 -12.63408 -12.42682 -12.39155 -12.10608 -12.02408 -11.88915 -11.76121 -11.71765 -11.54720 -11.11582 -11.03150 -10.49471 -10.22671 -9.69673 -9.45775 -8.10777 -6.18739 -0.64838 0.57787 0.62288 1.45973 1.46395 1.52289 1.82300 2.45647 2.79645 3.01722 3.20224 3.24831 3.49612 3.71539 3.96142 4.02259 4.03240 4.19868 4.25761 4.27836 4.30915 4.37307 4.52624 4.60214 4.66318 4.73626 4.80034 4.83989 4.85125 4.90701 4.93442 4.95775 5.20689 5.21020 5.22446 5.26608 5.28136 5.41603 5.57003 5.62875 5.67317 5.69970 5.88103 5.94935 6.18885 6.23922 6.30298 6.95768 7.48997 9.00526 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007783 B = 0.007079 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3596.575137 B = 3954.194469 C = 6584.141018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.167 4.167 3 C -0.106 4.106 4 C -0.572 4.572 5 H 0.148 0.852 6 C -0.155 4.155 7 S 2.609 3.391 8 O -0.975 6.975 9 O -0.996 6.996 10 N -1.096 6.096 11 C 0.209 3.791 12 H 0.087 0.913 13 C 0.035 3.965 14 C -0.523 4.523 15 H 0.086 0.914 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.939 3.061 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.260 1.260 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.129 4.129 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.416 0.584 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -6.108 -2.389 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C -0.144 4.144 4 C -0.685 4.685 5 H 0.166 0.834 6 C -0.213 4.213 7 S 2.705 3.295 8 O -0.965 6.965 9 O -0.986 6.986 10 N -0.853 5.853 11 C 0.102 3.898 12 H 0.105 0.895 13 C -0.004 4.004 14 C -0.561 4.561 15 H 0.104 0.896 16 C -0.190 4.190 17 N -0.573 5.573 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.223 1.223 21 H -0.185 1.185 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.031 -6.461 -3.010 14.853 hybrid contribution 0.912 1.452 0.877 1.926 sum -12.118 -5.009 -2.133 13.285 Atomic orbital electron populations 1.21744 0.93600 1.02617 1.02689 1.22105 0.98518 0.95931 1.03906 1.21588 0.88544 0.98624 1.05691 1.30220 1.06995 1.09618 1.21690 0.83421 1.21860 1.03348 0.91352 1.04753 1.04995 0.73104 0.74256 0.77161 1.93535 1.82249 1.33804 1.86940 1.93504 1.84998 1.67947 1.52176 1.55270 1.24934 1.54597 1.50473 1.19665 0.97048 0.85328 0.87794 0.89506 1.19202 0.91494 0.94629 0.95065 1.21704 0.93946 1.08172 1.32233 0.89579 1.25757 0.94912 1.00771 0.97563 1.70092 1.00704 1.39495 1.46978 0.85887 0.77584 0.80262 0.79797 1.19013 1.22291 1.18493 1.20541 0.98534 0.95692 0.95356 1.21095 0.99353 0.98780 0.95347 1.21414 1.00293 0.92500 1.00815 1.21447 0.99680 0.98583 0.95291 1.21418 0.98774 0.98167 0.95857 1.21252 1.00698 0.92316 1.00496 0.91151 0.92362 0.91879 0.90418 0.91708 0.90577 0.87166 0.88882 0.90354 0.90964 0.74917 0.97873 0.97609 0.93261 0.86826 0.84359 0.83461 0.83561 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.17 -3.75 5.62 30.59 0.17 -3.58 16 3 C -0.11 -2.32 4.68 30.59 0.14 -2.17 16 4 C -0.57 -15.30 2.89 30.59 0.09 -15.21 16 5 H 0.15 3.69 7.49 -2.39 -0.02 3.67 16 6 C -0.16 -4.27 8.87 71.98 0.64 -3.63 16 7 S 2.61 86.69 4.58 -56.49 -0.26 86.43 16 8 O -0.98 -35.68 15.14 -127.65 -1.93 -37.61 16 9 O -1.00 -37.68 17.74 -127.65 -2.26 -39.95 16 10 N -1.10 -38.73 4.35 -172.52 -0.75 -39.48 16 11 C 0.21 7.87 2.19 44.24 0.10 7.96 16 12 H 0.09 3.02 7.12 -2.39 -0.02 3.00 16 13 C 0.03 1.61 4.54 29.85 0.14 1.74 16 14 C -0.52 -25.20 8.58 25.60 0.22 -24.98 16 15 H 0.09 3.69 5.19 -2.91 -0.02 3.67 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -52.97 13.29 21.45 0.28 -52.69 16 18 Si 0.94 40.24 29.54 68.60 2.03 42.27 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 C -0.10 -3.63 4.83 -19.87 -0.10 -3.73 16 23 C -0.13 -4.47 9.33 22.27 0.21 -4.27 16 24 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 25 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 27 C -0.13 -4.22 9.67 22.27 0.22 -4.00 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.75 5.44 -2.39 -0.01 1.74 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.91 8.14 -2.38 -0.02 1.90 16 35 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.08 2.54 5.52 -2.39 -0.01 2.52 16 37 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 38 H 0.42 14.64 8.62 -96.75 -0.83 13.80 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.11 3.92 7.58 -2.91 -0.02 3.90 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.13 3.78 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -66.24 381.36 0.90 -65.34 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.13 Total: 38.79 kcal Atomic # 6 Polarization: -66.77 SS G_CDS: 3.67 Total: -63.10 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -0.47 Total: -92.17 kcal Atomic # 8 Polarization: -73.36 SS G_CDS: -4.20 Total: -77.56 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: 86.69 SS G_CDS: -0.26 Total: 86.43 kcal Total: -66.24 0.90 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.492 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds