Wall clock time and date at job start Tue Mar 31 2020 15:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.09012 * 109.46769 * 55.00200 * 4 3 2 6 6 C 1.52998 * 109.47382 * 174.99625 * 4 3 2 7 7 S 1.81394 * 109.47229 * 295.00514 * 4 3 2 8 8 O 1.42098 * 110.54561 * 65.12946 * 7 4 3 9 9 O 1.42102 * 110.54158 * 288.38075 * 7 4 3 10 10 N 1.65600 * 104.45023 * 176.75717 * 7 4 3 11 11 C 1.46499 * 119.99736 * 293.31616 * 10 7 4 12 12 H 1.08994 * 109.47300 * 25.70702 * 11 10 7 13 13 C 1.53002 * 109.47038 * 145.70818 * 11 10 7 14 14 C 1.50706 * 109.47055 * 294.99808 * 13 11 10 15 15 H 1.08003 * 119.99616 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00021 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99842 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47169 * 119.99921 * 18 16 14 21 21 H 1.48499 * 109.46666 * 239.99815 * 18 16 14 22 22 C 1.50704 * 109.47275 * 265.70202 * 11 10 7 23 23 C 1.38237 * 119.99836 * 313.90406 * 22 11 10 24 24 C 1.38236 * 119.99540 * 179.80657 * 23 22 11 25 25 C 1.38233 * 120.00089 * 0.39608 * 24 23 22 26 26 C 1.38237 * 119.99937 * 359.85580 * 25 24 23 27 27 C 1.38230 * 120.00234 * 359.95648 * 26 25 24 28 28 H 1.09003 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47273 * 300.00209 * 1 2 3 30 30 H 1.09008 * 109.47082 * 60.00334 * 1 2 3 31 31 H 1.09004 * 109.47273 * 239.99791 * 2 1 3 32 32 H 1.08996 * 109.47160 * 120.00048 * 2 1 3 33 33 H 1.08997 * 109.47088 * 60.00148 * 3 2 1 34 34 H 1.09004 * 109.47347 * 299.99721 * 3 2 1 35 35 H 1.09000 * 109.47048 * 173.25884 * 6 4 3 36 36 H 1.08994 * 109.47665 * 293.26686 * 6 4 3 37 37 H 1.09004 * 109.46875 * 53.26424 * 6 4 3 38 38 H 0.97005 * 119.99953 * 113.31494 * 10 7 4 39 39 H 1.08995 * 109.47296 * 54.99519 * 13 11 10 40 40 H 1.09002 * 109.47457 * 174.99787 * 13 11 10 41 41 H 0.97005 * 120.00283 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.00062 * 359.97438 * 23 22 11 43 43 H 1.07999 * 119.99787 * 180.22777 * 24 23 22 44 44 H 1.07997 * 120.00075 * 179.83429 * 25 24 23 45 45 H 1.08008 * 119.99591 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00187 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8411 6 6 4.0800 2.8795 -0.1252 7 16 4.1740 0.7199 1.5509 8 8 3.8127 -0.6518 1.6358 9 8 3.9441 1.6066 2.6372 10 7 5.8213 0.6986 1.3827 11 6 6.4440 -0.1695 0.3802 12 1 5.7357 -0.3597 -0.4261 13 6 7.6890 0.5166 -0.1858 14 6 7.2813 1.7601 -0.9333 15 1 6.2385 2.0338 -0.9977 16 6 8.2394 2.5481 -1.5348 17 7 9.5091 2.2150 -1.4558 18 14 7.7341 4.0898 -2.4607 19 1 6.2580 4.2411 -2.4019 20 1 8.3786 5.2743 -1.8389 21 1 8.1638 3.9793 -3.8778 22 6 6.8378 -1.4752 1.0214 23 6 7.4939 -1.4776 2.2382 24 6 7.8516 -2.6754 2.8281 25 6 7.5605 -3.8706 2.1975 26 6 6.9090 -3.8680 0.9783 27 6 6.5479 -2.6703 0.3901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1633 2.8923 -0.0047 36 1 3.8189 3.2731 -1.1074 37 1 3.6213 3.4968 0.6473 38 1 6.3739 1.2609 1.9478 39 1 8.3581 0.7867 0.6311 40 1 8.2017 -0.1642 -0.8654 41 1 10.1833 2.7696 -1.8787 42 1 7.7247 -0.5437 2.7290 43 1 8.3609 -2.6774 3.7805 44 1 7.8423 -4.8063 2.6572 45 1 6.6820 -4.8018 0.4854 46 1 6.0386 -2.6683 -0.5622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582790036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:07 Heat of formation + Delta-G solvation = -74.403356 kcal Electronic energy + Delta-G solvation = -27008.950782 eV Core-core repulsion = 23410.645458 eV Total energy + Delta-G solvation = -3598.305324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.01569 -36.77472 -36.45873 -35.77059 -35.54596 -32.71551 -32.14020 -30.64419 -30.31235 -28.60890 -26.76730 -24.78680 -22.58467 -22.30631 -21.89431 -21.42548 -20.21477 -18.74629 -17.59651 -17.01032 -16.34272 -16.21145 -15.60186 -14.89599 -14.74566 -14.74218 -14.50984 -14.21763 -13.66475 -13.42150 -13.19614 -13.00762 -12.90206 -12.64362 -12.53238 -12.32162 -12.11142 -12.09162 -11.93523 -11.64031 -11.57652 -11.27218 -11.19667 -11.05293 -10.87140 -10.85349 -10.72172 -10.71718 -10.60436 -10.41558 -10.07288 -9.77998 -9.21749 -8.80811 -8.52373 -8.46444 -8.17869 -6.14048 -4.17665 0.66636 1.81192 1.85029 3.17806 3.20726 3.29472 3.30246 4.08666 4.24733 4.33640 4.43510 4.58526 4.83684 4.93454 5.20227 5.22764 5.25386 5.28534 5.31180 5.37968 5.44521 5.53501 5.59435 5.67791 5.73215 5.77184 5.91613 5.95294 5.96547 5.99454 6.04623 6.16539 6.20119 6.30233 6.36485 6.44786 6.49101 6.57994 6.86882 6.89253 7.12019 7.42060 7.44412 7.54044 7.68229 7.83940 8.20682 8.87526 9.46940 10.96697 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.007081 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.983664 B = 3953.444444 C = 6597.923411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C -0.103 4.103 4 C -0.589 4.589 5 H 0.138 0.862 6 C -0.147 4.147 7 S 2.608 3.392 8 O -0.957 6.957 9 O -0.971 6.971 10 N -1.092 6.092 11 C 0.196 3.804 12 H 0.077 0.923 13 C 0.024 3.976 14 C -0.527 4.527 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.883 3.117 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.074 4.074 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 -5.683 3.346 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.198 4.198 3 C -0.142 4.142 4 C -0.698 4.698 5 H 0.156 0.844 6 C -0.205 4.205 7 S 2.700 3.300 8 O -0.946 6.946 9 O -0.961 6.961 10 N -0.851 5.851 11 C 0.089 3.911 12 H 0.095 0.905 13 C -0.014 4.014 14 C -0.565 4.565 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.710 3.290 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.076 4.076 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.957 -6.031 3.915 13.106 hybrid contribution 0.312 1.388 -1.146 1.827 sum -10.646 -4.643 2.769 11.940 Atomic orbital electron populations 1.21731 0.95326 1.01879 1.01725 1.22060 0.96864 0.96223 1.04681 1.21461 0.90487 0.98100 1.04187 1.30370 1.05315 1.10035 1.24102 0.84419 1.21792 1.04164 0.90966 1.03554 1.05099 0.73687 0.74815 0.76407 1.93561 1.82415 1.32431 1.86242 1.93542 1.84705 1.67772 1.50086 1.55334 1.24521 1.55564 1.49642 1.19968 0.98658 0.85323 0.87119 0.90522 1.19423 0.90267 0.95230 0.96488 1.21329 0.93731 1.08067 1.33348 0.91403 1.24965 0.94954 0.97770 0.96292 1.69958 1.00044 1.38549 1.44165 0.86688 0.78920 0.83517 0.79845 1.19417 1.20971 1.21068 1.20479 0.96683 0.95537 0.94926 1.20932 0.97814 0.97852 0.95383 1.21063 1.00746 0.92743 0.99809 1.20998 1.00433 0.97620 0.96037 1.21008 0.99557 0.97615 0.95957 1.20975 0.99905 0.91994 0.99815 0.92398 0.92689 0.92733 0.90881 0.89591 0.91042 0.89754 0.88382 0.91029 0.91669 0.74771 0.95292 0.94928 0.92906 0.86273 0.86675 0.86862 0.86654 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.16 -1.96 5.62 -26.73 -0.15 -2.11 16 3 C -0.10 -1.28 4.68 -26.73 -0.13 -1.40 16 4 C -0.59 -8.44 2.87 -26.73 -0.08 -8.52 16 5 H 0.14 1.88 7.46 -51.92 -0.39 1.49 16 6 C -0.15 -2.20 8.52 37.16 0.32 -1.89 16 7 S 2.61 43.45 4.57 -107.50 -0.49 42.96 16 8 O -0.96 -17.43 15.20 -57.54 -0.87 -18.31 16 9 O -0.97 -18.26 17.93 -57.54 -1.03 -19.29 16 10 N -1.09 -18.82 4.25 -5.88 -0.03 -18.85 16 11 C 0.20 3.61 2.20 -69.08 -0.15 3.46 16 12 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 13 C 0.02 0.54 4.48 -27.88 -0.13 0.42 16 14 C -0.53 -12.60 8.70 -34.44 -0.30 -12.90 16 15 H 0.07 1.48 4.81 -52.48 -0.25 1.23 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 18 Si 0.88 19.77 29.54 -169.99 -5.02 14.75 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.07 -1.33 4.84 -104.62 -0.51 -1.84 16 23 C -0.10 -1.73 9.28 -39.58 -0.37 -2.10 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.11 -1.79 9.67 -39.59 -0.38 -2.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.20 5.46 -51.93 -0.28 0.91 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.66 5.50 -51.93 -0.29 1.37 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.42 6.93 8.75 -34.47 -0.30 6.63 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.12 1.94 7.86 -52.49 -0.41 1.52 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 46 H 0.12 1.76 8.00 -52.49 -0.42 1.34 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -30.42 381.23 -11.09 -41.51 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.34 Total: 10.78 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: -2.79 Total: -35.50 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.71 Total: -42.64 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.91 Total: -37.60 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 43.45 SS G_CDS: -0.49 Total: 42.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.42 -11.09 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.892 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds