Wall clock time and date at job start Tue Mar 31 2020 15:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.09012 * 109.46769 * 55.00200 * 4 3 2 6 6 C 1.52998 * 109.47382 * 174.99625 * 4 3 2 7 7 S 1.81394 * 109.47229 * 295.00514 * 4 3 2 8 8 O 1.42098 * 110.54561 * 65.12946 * 7 4 3 9 9 O 1.42102 * 110.54158 * 288.38075 * 7 4 3 10 10 N 1.65600 * 104.45023 * 176.75717 * 7 4 3 11 11 C 1.46499 * 119.99736 * 293.31616 * 10 7 4 12 12 H 1.08994 * 109.47300 * 25.70702 * 11 10 7 13 13 C 1.53002 * 109.47038 * 145.70818 * 11 10 7 14 14 C 1.50706 * 109.47055 * 294.99808 * 13 11 10 15 15 H 1.08003 * 119.99616 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00021 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99842 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47169 * 119.99921 * 18 16 14 21 21 H 1.48499 * 109.46666 * 239.99815 * 18 16 14 22 22 C 1.50704 * 109.47275 * 265.70202 * 11 10 7 23 23 C 1.38237 * 119.99836 * 313.90406 * 22 11 10 24 24 C 1.38236 * 119.99540 * 179.80657 * 23 22 11 25 25 C 1.38233 * 120.00089 * 0.39608 * 24 23 22 26 26 C 1.38237 * 119.99937 * 359.85580 * 25 24 23 27 27 C 1.38230 * 120.00234 * 359.95648 * 26 25 24 28 28 H 1.09003 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47273 * 300.00209 * 1 2 3 30 30 H 1.09008 * 109.47082 * 60.00334 * 1 2 3 31 31 H 1.09004 * 109.47273 * 239.99791 * 2 1 3 32 32 H 1.08996 * 109.47160 * 120.00048 * 2 1 3 33 33 H 1.08997 * 109.47088 * 60.00148 * 3 2 1 34 34 H 1.09004 * 109.47347 * 299.99721 * 3 2 1 35 35 H 1.09000 * 109.47048 * 173.25884 * 6 4 3 36 36 H 1.08994 * 109.47665 * 293.26686 * 6 4 3 37 37 H 1.09004 * 109.46875 * 53.26424 * 6 4 3 38 38 H 0.97005 * 119.99953 * 113.31494 * 10 7 4 39 39 H 1.08995 * 109.47296 * 54.99519 * 13 11 10 40 40 H 1.09002 * 109.47457 * 174.99787 * 13 11 10 41 41 H 0.97005 * 120.00283 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.00062 * 359.97438 * 23 22 11 43 43 H 1.07999 * 119.99787 * 180.22777 * 24 23 22 44 44 H 1.07997 * 120.00075 * 179.83429 * 25 24 23 45 45 H 1.08008 * 119.99591 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00187 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8411 6 6 4.0800 2.8795 -0.1252 7 16 4.1740 0.7199 1.5509 8 8 3.8127 -0.6518 1.6358 9 8 3.9441 1.6066 2.6372 10 7 5.8213 0.6986 1.3827 11 6 6.4440 -0.1695 0.3802 12 1 5.7357 -0.3597 -0.4261 13 6 7.6890 0.5166 -0.1858 14 6 7.2813 1.7601 -0.9333 15 1 6.2385 2.0338 -0.9977 16 6 8.2394 2.5481 -1.5348 17 7 9.5091 2.2150 -1.4558 18 14 7.7341 4.0898 -2.4607 19 1 6.2580 4.2411 -2.4019 20 1 8.3786 5.2743 -1.8389 21 1 8.1638 3.9793 -3.8778 22 6 6.8378 -1.4752 1.0214 23 6 7.4939 -1.4776 2.2382 24 6 7.8516 -2.6754 2.8281 25 6 7.5605 -3.8706 2.1975 26 6 6.9090 -3.8680 0.9783 27 6 6.5479 -2.6703 0.3901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1633 2.8923 -0.0047 36 1 3.8189 3.2731 -1.1074 37 1 3.6213 3.4968 0.6473 38 1 6.3739 1.2609 1.9478 39 1 8.3581 0.7867 0.6311 40 1 8.2017 -0.1642 -0.8654 41 1 10.1833 2.7696 -1.8787 42 1 7.7247 -0.5437 2.7290 43 1 8.3609 -2.6774 3.7805 44 1 7.8423 -4.8063 2.6572 45 1 6.6820 -4.8018 0.4854 46 1 6.0386 -2.6683 -0.5622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582790036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:07 Heat of formation + Delta-G solvation = -92.059833 kcal Electronic energy + Delta-G solvation = -27009.716424 eV Core-core repulsion = 23410.645458 eV Total energy + Delta-G solvation = -3599.070966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28529 -38.15594 -37.55172 -37.18362 -36.91850 -34.59063 -33.16125 -31.90894 -31.54944 -30.31933 -27.77136 -26.41663 -23.86245 -23.65294 -23.22270 -22.37018 -21.60506 -20.07054 -18.96361 -18.53952 -17.78930 -17.56442 -17.01499 -16.47293 -16.03455 -15.95779 -15.75354 -15.35241 -14.99642 -14.57556 -14.44616 -14.22486 -14.16776 -14.10365 -13.89472 -13.62016 -13.51859 -13.23572 -13.09399 -13.01623 -12.97106 -12.83115 -12.61369 -12.45448 -12.36644 -12.10524 -12.02820 -11.88436 -11.74024 -11.70678 -11.54179 -11.10913 -10.98823 -10.51442 -10.21982 -9.69483 -9.47030 -8.10829 -6.18610 -0.64689 0.57388 0.62449 1.43114 1.46756 1.55280 1.83191 2.45818 2.79781 3.02111 3.20412 3.25253 3.49524 3.71724 3.95572 4.02009 4.02572 4.20186 4.26031 4.28370 4.31347 4.37313 4.52412 4.61583 4.66833 4.73561 4.79236 4.83024 4.85791 4.90018 4.93757 4.96339 5.20711 5.21066 5.22185 5.26799 5.28082 5.41601 5.57256 5.62837 5.67422 5.70035 5.89099 5.94912 6.18955 6.24043 6.31061 6.97005 7.49521 9.00959 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.007081 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.983664 B = 3953.444444 C = 6597.923411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.167 4.167 3 C -0.105 4.105 4 C -0.573 4.573 5 H 0.148 0.852 6 C -0.152 4.152 7 S 2.609 3.391 8 O -0.975 6.975 9 O -0.995 6.995 10 N -1.096 6.096 11 C 0.209 3.791 12 H 0.087 0.913 13 C 0.034 3.966 14 C -0.523 4.523 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.933 5.933 18 Si 0.939 3.061 19 H -0.244 1.244 20 H -0.289 1.289 21 H -0.289 1.289 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.127 4.127 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.417 0.583 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.258 0.742 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 -6.117 2.687 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.204 4.204 3 C -0.144 4.144 4 C -0.686 4.686 5 H 0.166 0.834 6 C -0.210 4.210 7 S 2.705 3.295 8 O -0.965 6.965 9 O -0.986 6.986 10 N -0.853 5.853 11 C 0.102 3.898 12 H 0.105 0.895 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.574 5.574 18 Si 0.765 3.235 19 H -0.167 1.167 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.251 0.749 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.134 -6.483 3.292 15.012 hybrid contribution 0.975 1.452 -0.905 1.969 sum -12.159 -5.031 2.387 13.373 Atomic orbital electron populations 1.21747 0.93599 1.02627 1.02690 1.22098 0.98518 0.95912 1.03891 1.21583 0.88525 0.98635 1.05680 1.30228 1.07020 1.09592 1.21714 0.83428 1.21838 1.02802 0.91382 1.04982 1.05005 0.73097 0.74279 0.77123 1.93535 1.82431 1.33601 1.86961 1.93504 1.84860 1.68136 1.52102 1.55286 1.24934 1.55604 1.49468 1.19665 0.96920 0.85575 0.87665 0.89539 1.19216 0.91531 0.94697 0.95043 1.21850 0.94686 1.07813 1.31693 0.89181 1.25776 0.94939 1.00846 0.97621 1.70105 1.01266 1.40034 1.46009 0.85779 0.79943 0.79775 0.78005 1.16736 1.21581 1.21580 1.20532 0.98250 0.95695 0.95762 1.21100 0.98802 0.98761 0.95764 1.21412 1.00446 0.92434 1.00757 1.21447 0.99139 0.98613 0.95730 1.21420 0.98612 0.98146 0.96138 1.21262 1.00492 0.92328 1.00493 0.91862 0.92345 0.91173 0.90403 0.91729 0.90530 0.87228 0.90557 0.89338 0.90556 0.74894 0.97780 0.97782 0.93310 0.86812 0.84341 0.83464 0.83594 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.17 -3.72 5.62 30.59 0.17 -3.55 16 3 C -0.11 -2.30 4.68 30.59 0.14 -2.16 16 4 C -0.57 -15.27 2.87 30.59 0.09 -15.18 16 5 H 0.15 3.68 7.46 -2.38 -0.02 3.67 16 6 C -0.15 -4.19 8.52 71.98 0.61 -3.57 16 7 S 2.61 86.19 4.57 -56.49 -0.26 85.93 16 8 O -0.98 -35.48 15.20 -127.65 -1.94 -37.42 16 9 O -1.00 -37.45 17.93 -127.65 -2.29 -39.74 16 10 N -1.10 -38.48 4.25 -172.52 -0.73 -39.22 16 11 C 0.21 7.85 2.20 44.25 0.10 7.94 16 12 H 0.09 3.00 7.02 -2.39 -0.02 2.98 16 13 C 0.03 1.56 4.48 29.85 0.13 1.70 16 14 C -0.52 -25.18 8.70 25.60 0.22 -24.96 16 15 H 0.09 3.84 4.81 -2.91 -0.01 3.83 16 16 C 0.01 0.30 5.46 84.65 0.46 0.77 16 17 N -0.93 -53.17 13.29 21.44 0.28 -52.88 16 18 Si 0.94 40.30 29.54 68.60 2.03 42.32 16 19 H -0.24 -9.37 7.11 99.48 0.71 -8.67 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.10 -3.66 4.84 -19.86 -0.10 -3.76 16 23 C -0.13 -4.40 9.28 22.27 0.21 -4.20 16 24 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 25 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 26 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 27 C -0.13 -4.15 9.67 22.27 0.22 -3.93 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.73 5.46 -2.39 -0.01 1.72 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.45 5.50 -2.39 -0.01 2.44 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.42 14.48 8.75 -96.74 -0.85 13.63 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.11 3.93 7.86 -2.91 -0.02 3.90 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.13 3.76 8.00 -2.91 -0.02 3.74 16 Total: -1.00 -66.46 381.23 0.85 -65.61 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.12 Total: 38.38 kcal Atomic # 6 Polarization: -66.63 SS G_CDS: 3.64 Total: -62.99 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -0.45 Total: -92.10 kcal Atomic # 8 Polarization: -72.93 SS G_CDS: -4.23 Total: -77.16 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 86.19 SS G_CDS: -0.26 Total: 85.93 kcal Total: -66.46 0.85 -65.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.452 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds