Wall clock time and date at job start Tue Mar 31 2020 15:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.52997 * 109.47448 * 184.99813 * 4 3 2 7 7 S 1.81399 * 109.47175 * 65.00000 * 4 3 2 8 8 O 1.42102 * 110.54586 * 291.62647 * 7 4 3 9 9 O 1.42104 * 110.54477 * 68.37307 * 7 4 3 10 10 N 1.65600 * 104.45267 * 180.02562 * 7 4 3 11 11 C 1.46503 * 119.99761 * 65.00014 * 10 7 4 12 12 H 1.08997 * 109.47228 * 25.00221 * 11 10 7 13 13 C 1.52998 * 109.46724 * 145.00065 * 11 10 7 14 14 C 1.50705 * 109.47369 * 294.99621 * 13 11 10 15 15 H 1.07994 * 119.99634 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99627 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00608 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99616 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47063 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47145 * 119.99910 * 18 16 14 21 21 H 1.48494 * 109.47287 * 240.00211 * 18 16 14 22 22 C 1.50693 * 109.46916 * 264.99952 * 11 10 7 23 23 C 1.38239 * 119.99974 * 319.72583 * 22 11 10 24 24 C 1.38241 * 119.99709 * 179.80738 * 23 22 11 25 25 C 1.38236 * 119.99968 * 0.40529 * 24 23 22 26 26 C 1.38234 * 120.00176 * 359.84888 * 25 24 23 27 27 C 1.38234 * 119.99760 * 359.96116 * 26 25 24 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47346 * 300.00002 * 6 4 3 36 36 H 1.09007 * 109.46964 * 60.00529 * 6 4 3 37 37 H 1.09004 * 109.47224 * 180.02562 * 6 4 3 38 38 H 0.97000 * 120.00074 * 245.00092 * 10 7 4 39 39 H 1.08995 * 109.47455 * 55.00316 * 13 11 10 40 40 H 1.09002 * 109.46852 * 175.00096 * 13 11 10 41 41 H 0.97005 * 120.00183 * 179.97438 * 17 16 14 42 42 H 1.07988 * 120.00129 * 0.02562 * 23 22 11 43 43 H 1.07994 * 120.00075 * 180.23002 * 24 23 22 44 44 H 1.07998 * 120.00156 * 179.83197 * 25 24 23 45 45 H 1.07996 * 120.00035 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99679 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0799 2.8796 0.1250 7 16 4.1740 0.7201 -1.5510 8 8 3.8779 -0.6688 -1.6026 9 8 3.8773 1.5735 -2.6478 10 7 5.8237 0.7808 -1.4201 11 6 6.5064 -0.0091 -0.3923 12 1 5.8893 -0.8663 -0.1232 13 6 7.8506 -0.4987 -0.9347 14 6 7.6141 -1.4515 -2.0781 15 1 6.6058 -1.6842 -2.3872 16 6 8.6849 -2.0261 -2.7294 17 7 9.9127 -1.7431 -2.3527 18 14 8.3917 -3.2066 -4.1471 19 1 6.9315 -3.3560 -4.3729 20 1 9.0300 -2.6718 -5.3767 21 1 8.9803 -4.5299 -3.8192 22 6 6.7380 0.8458 0.8268 23 6 7.1270 2.1645 0.6826 24 6 7.3355 2.9498 1.8010 25 6 7.1631 2.4141 3.0636 26 6 6.7792 1.0940 3.2079 27 6 6.5669 0.3099 2.0895 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.7162 3.4691 -0.7165 36 1 3.7170 3.3137 1.0567 37 1 5.1700 2.8796 0.1241 38 1 6.3379 1.3393 -2.0239 39 1 8.4327 0.3532 -1.2862 40 1 8.3974 -1.0103 -0.1427 41 1 10.6660 -2.1476 -2.8107 42 1 7.2646 2.5820 -0.3037 43 1 7.6359 3.9810 1.6883 44 1 7.3287 3.0269 3.9374 45 1 6.6449 0.6755 4.1943 46 1 6.2673 -0.7217 2.2022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582790038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:12 Heat of formation + Delta-G solvation = -72.551968 kcal Electronic energy + Delta-G solvation = -27108.737270 eV Core-core repulsion = 23510.512228 eV Total energy + Delta-G solvation = -3598.225042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29813 -36.77688 -36.54221 -35.78427 -35.51445 -32.70436 -32.19244 -30.85219 -30.45506 -28.62604 -26.84163 -24.80120 -22.82095 -22.28835 -22.02476 -21.48549 -20.28418 -18.79586 -17.66984 -16.94749 -16.51027 -16.16184 -15.63395 -15.00921 -14.79493 -14.68986 -14.52489 -14.39903 -13.75074 -13.55511 -13.30854 -13.21029 -13.00111 -12.98400 -12.49232 -12.30395 -12.23167 -12.07992 -11.92456 -11.67743 -11.62657 -11.30531 -11.19523 -11.09345 -10.95057 -10.89043 -10.77156 -10.75677 -10.60538 -10.44402 -10.05626 -9.85034 -9.20641 -8.83852 -8.66040 -8.39223 -8.33228 -6.01601 -4.03087 0.60839 1.57532 1.60492 3.15859 3.33953 3.41979 3.50352 4.01470 4.07568 4.32712 4.48244 4.49141 4.76631 4.86291 5.09246 5.09736 5.13503 5.16667 5.19499 5.33210 5.35452 5.36123 5.43721 5.62418 5.66964 5.68952 5.71058 5.73168 5.79105 5.82488 5.95935 6.04497 6.08143 6.11638 6.18328 6.22516 6.35277 6.60063 6.68038 6.69363 6.95046 7.21879 7.43951 7.58540 7.70206 7.97771 8.34733 9.04607 9.61900 11.09188 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.005797 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.359149 B = 4828.810562 C = 6735.655398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C -0.102 4.102 4 C -0.594 4.594 5 H 0.134 0.866 6 C -0.141 4.141 7 S 2.607 3.393 8 O -0.949 6.949 9 O -0.968 6.968 10 N -1.090 6.090 11 C 0.187 3.813 12 H 0.091 0.909 13 C 0.031 3.969 14 C -0.516 4.516 15 H 0.065 0.935 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.088 4.088 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.120 4.120 27 C -0.117 4.117 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.417 0.583 39 H 0.027 0.973 40 H 0.032 0.968 41 H 0.260 0.740 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 9.885 10.785 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C -0.140 4.140 4 C -0.703 4.703 5 H 0.153 0.847 6 C -0.199 4.199 7 S 2.698 3.302 8 O -0.939 6.939 9 O -0.959 6.959 10 N -0.848 5.848 11 C 0.080 3.920 12 H 0.108 0.892 13 C -0.007 4.007 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.090 4.090 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.139 4.139 27 C -0.136 4.136 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.539 9.378 10.122 18.645 hybrid contribution 0.493 -0.163 -0.231 0.568 sum -12.046 9.215 9.891 18.107 Atomic orbital electron populations 1.21729 0.95164 1.02051 1.01733 1.22024 0.97010 0.96091 1.04586 1.21431 0.90203 0.98220 1.04192 1.30453 1.05753 1.09511 1.24570 0.84746 1.21729 1.02959 0.91647 1.03569 1.05188 0.73741 0.75060 0.76200 1.93589 1.83454 1.30684 1.86182 1.93545 1.83856 1.69422 1.49051 1.55265 1.24317 1.59693 1.45572 1.20107 0.99311 0.89770 0.82805 0.89152 1.19341 0.88253 0.96728 0.96411 1.21270 0.93202 1.25533 1.15388 0.91727 1.24969 0.95143 0.96777 0.97379 1.69966 0.97924 1.44142 1.41494 0.86593 0.78674 0.80882 0.82335 1.19397 1.21062 1.21022 1.20770 0.97710 0.94913 0.95592 1.20937 0.98694 0.93812 0.98723 1.21101 1.00644 0.99653 0.92706 1.21034 1.01156 0.95611 0.97081 1.21050 1.00279 0.94259 0.98271 1.21080 1.00662 0.99874 0.91943 0.92737 0.92597 0.92266 0.90810 0.89897 0.90843 0.89855 0.91345 0.91103 0.90021 0.74771 0.95523 0.94996 0.93076 0.85900 0.86520 0.86777 0.86538 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.16 -1.87 5.62 -26.73 -0.15 -2.02 16 3 C -0.10 -1.12 4.68 -26.74 -0.13 -1.24 16 4 C -0.59 -7.35 2.57 -26.74 -0.07 -7.42 16 5 H 0.13 1.57 7.74 -51.92 -0.40 1.17 16 6 C -0.14 -1.56 9.06 37.16 0.34 -1.22 16 7 S 2.61 43.82 4.53 -107.50 -0.49 43.33 16 8 O -0.95 -18.98 15.14 -57.54 -0.87 -19.85 16 9 O -0.97 -18.28 17.96 -57.54 -1.03 -19.32 16 10 N -1.09 -18.93 4.06 -5.88 -0.02 -18.95 16 11 C 0.19 3.46 2.35 -69.09 -0.16 3.29 16 12 H 0.09 1.70 7.34 -51.93 -0.38 1.32 16 13 C 0.03 0.73 4.55 -27.88 -0.13 0.61 16 14 C -0.52 -14.01 8.84 -34.44 -0.30 -14.32 16 15 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.09 -1.35 4.07 -104.63 -0.43 -1.78 16 23 C -0.10 -1.44 6.40 -39.58 -0.25 -1.70 16 24 C -0.12 -1.49 10.04 -39.58 -0.40 -1.89 16 25 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 26 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.64 9.67 -39.58 -0.38 -2.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.16 5.61 -51.93 -0.29 0.87 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.92 4.32 -51.93 -0.22 0.70 16 38 H 0.42 6.98 8.60 -34.47 -0.30 6.68 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.12 1.65 7.53 -52.49 -0.40 1.25 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.60 8.04 -52.48 -0.42 1.18 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -32.89 379.94 -11.01 -43.90 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.45 Total: 6.63 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: -2.58 Total: -32.99 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.71 Total: -44.33 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.90 Total: -39.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 43.82 SS G_CDS: -0.49 Total: 43.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.89 -11.01 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.654 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds