Wall clock time and date at job start Tue Mar 31 2020 15:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.52997 * 109.47448 * 184.99813 * 4 3 2 7 7 S 1.81399 * 109.47175 * 65.00000 * 4 3 2 8 8 O 1.42102 * 110.54586 * 291.62647 * 7 4 3 9 9 O 1.42104 * 110.54477 * 68.37307 * 7 4 3 10 10 N 1.65600 * 104.45267 * 180.02562 * 7 4 3 11 11 C 1.46503 * 119.99761 * 65.00014 * 10 7 4 12 12 H 1.08997 * 109.47228 * 25.00221 * 11 10 7 13 13 C 1.52998 * 109.46724 * 145.00065 * 11 10 7 14 14 C 1.50705 * 109.47369 * 294.99621 * 13 11 10 15 15 H 1.07994 * 119.99634 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99627 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00608 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99616 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47063 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47145 * 119.99910 * 18 16 14 21 21 H 1.48494 * 109.47287 * 240.00211 * 18 16 14 22 22 C 1.50693 * 109.46916 * 264.99952 * 11 10 7 23 23 C 1.38239 * 119.99974 * 319.72583 * 22 11 10 24 24 C 1.38241 * 119.99709 * 179.80738 * 23 22 11 25 25 C 1.38236 * 119.99968 * 0.40529 * 24 23 22 26 26 C 1.38234 * 120.00176 * 359.84888 * 25 24 23 27 27 C 1.38234 * 119.99760 * 359.96116 * 26 25 24 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47346 * 300.00002 * 6 4 3 36 36 H 1.09007 * 109.46964 * 60.00529 * 6 4 3 37 37 H 1.09004 * 109.47224 * 180.02562 * 6 4 3 38 38 H 0.97000 * 120.00074 * 245.00092 * 10 7 4 39 39 H 1.08995 * 109.47455 * 55.00316 * 13 11 10 40 40 H 1.09002 * 109.46852 * 175.00096 * 13 11 10 41 41 H 0.97005 * 120.00183 * 179.97438 * 17 16 14 42 42 H 1.07988 * 120.00129 * 0.02562 * 23 22 11 43 43 H 1.07994 * 120.00075 * 180.23002 * 24 23 22 44 44 H 1.07998 * 120.00156 * 179.83197 * 25 24 23 45 45 H 1.07996 * 120.00035 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99679 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0799 2.8796 0.1250 7 16 4.1740 0.7201 -1.5510 8 8 3.8779 -0.6688 -1.6026 9 8 3.8773 1.5735 -2.6478 10 7 5.8237 0.7808 -1.4201 11 6 6.5064 -0.0091 -0.3923 12 1 5.8893 -0.8663 -0.1232 13 6 7.8506 -0.4987 -0.9347 14 6 7.6141 -1.4515 -2.0781 15 1 6.6058 -1.6842 -2.3872 16 6 8.6849 -2.0261 -2.7294 17 7 9.9127 -1.7431 -2.3527 18 14 8.3917 -3.2066 -4.1471 19 1 6.9315 -3.3560 -4.3729 20 1 9.0300 -2.6718 -5.3767 21 1 8.9803 -4.5299 -3.8192 22 6 6.7380 0.8458 0.8268 23 6 7.1270 2.1645 0.6826 24 6 7.3355 2.9498 1.8010 25 6 7.1631 2.4141 3.0636 26 6 6.7792 1.0940 3.2079 27 6 6.5669 0.3099 2.0895 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.7162 3.4691 -0.7165 36 1 3.7170 3.3137 1.0567 37 1 5.1700 2.8796 0.1241 38 1 6.3379 1.3393 -2.0239 39 1 8.4327 0.3532 -1.2862 40 1 8.3974 -1.0103 -0.1427 41 1 10.6660 -2.1476 -2.8107 42 1 7.2646 2.5820 -0.3037 43 1 7.6359 3.9810 1.6883 44 1 7.3287 3.0269 3.9374 45 1 6.6449 0.6755 4.1943 46 1 6.2673 -0.7217 2.2022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582790038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:12 Heat of formation + Delta-G solvation = -93.133670 kcal Electronic energy + Delta-G solvation = -27109.629760 eV Core-core repulsion = 23510.512228 eV Total energy + Delta-G solvation = -3599.117531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39663 -38.20136 -37.51004 -37.19539 -36.91525 -34.71366 -33.16539 -31.94119 -31.52759 -30.38029 -27.70553 -26.50221 -24.01362 -23.46918 -23.25396 -22.38924 -21.60066 -20.12310 -19.02213 -18.49579 -17.77873 -17.69656 -17.00551 -16.48484 -16.11431 -15.87570 -15.74559 -15.36112 -15.09243 -14.56291 -14.53008 -14.31342 -14.19237 -14.07524 -13.90580 -13.80289 -13.28387 -13.21624 -13.14248 -13.01089 -12.97398 -12.87397 -12.64716 -12.49486 -12.44122 -12.13393 -12.08048 -11.83317 -11.75329 -11.71116 -11.60569 -11.32202 -11.10287 -10.58094 -10.22823 -9.64331 -9.46344 -8.19846 -6.26803 -0.68778 0.54405 0.62285 1.34212 1.36792 1.50056 1.81692 2.39994 2.81692 3.00224 3.13984 3.20611 3.47418 3.69193 3.94277 3.96281 4.07238 4.19309 4.25416 4.28517 4.34212 4.41984 4.49266 4.60211 4.66194 4.75978 4.77585 4.83309 4.86540 4.87221 4.92576 4.97037 5.18257 5.19847 5.22183 5.25639 5.28980 5.38269 5.45628 5.59874 5.69117 5.73747 5.80907 5.94657 6.17717 6.23097 6.27066 6.87786 7.40996 8.90859 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.005797 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.359149 B = 4828.810562 C = 6735.655398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.168 4.168 3 C -0.104 4.104 4 C -0.558 4.558 5 H 0.147 0.853 6 C -0.145 4.145 7 S 2.594 3.406 8 O -0.994 6.994 9 O -0.997 6.997 10 N -1.095 6.095 11 C 0.202 3.798 12 H 0.078 0.922 13 C 0.039 3.961 14 C -0.526 4.526 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.942 3.058 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.416 0.584 39 H 0.010 0.990 40 H 0.008 0.992 41 H 0.263 0.737 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 11.815 13.378 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C -0.143 4.143 4 C -0.672 4.672 5 H 0.165 0.835 6 C -0.203 4.203 7 S 2.692 3.308 8 O -0.984 6.984 9 O -0.987 6.987 10 N -0.853 5.853 11 C 0.095 3.905 12 H 0.096 0.904 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.069 0.931 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.768 3.232 19 H -0.200 1.200 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.149 4.149 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.029 0.971 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.670 11.281 12.666 21.784 hybrid contribution 0.819 -0.706 -0.945 1.436 sum -12.851 10.575 11.721 20.355 Atomic orbital electron populations 1.21743 0.93408 1.02565 1.02908 1.22085 0.98724 0.96428 1.03359 1.21591 0.88574 0.98111 1.06049 1.30132 1.06874 1.10264 1.19943 0.83525 1.21855 1.02981 0.90233 1.05251 1.05405 0.73300 0.74259 0.77881 1.93532 1.83750 1.33553 1.87564 1.93495 1.83975 1.69461 1.51809 1.55162 1.24701 1.59606 1.45783 1.19658 0.96025 0.90562 0.84288 0.90418 1.19129 0.90970 0.95180 0.94683 1.21565 0.92472 1.26044 1.16372 0.93127 1.25687 0.95075 0.98374 0.99681 1.70052 0.98529 1.45283 1.42703 0.85738 0.78122 0.79427 0.79898 1.19998 1.20171 1.19966 1.20411 1.00522 0.95324 0.94509 1.21008 0.99019 0.93470 0.99612 1.21394 0.99691 1.00612 0.92232 1.21447 0.99124 0.95549 0.97887 1.21353 0.99235 0.94440 0.98616 1.21215 1.01205 1.00353 0.92097 0.90544 0.92410 0.92213 0.90271 0.93045 0.90571 0.86229 0.91023 0.88096 0.90273 0.74933 0.97140 0.97332 0.92841 0.86268 0.83998 0.83566 0.83919 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.17 -3.78 5.62 30.59 0.17 -3.61 16 3 C -0.10 -2.04 4.68 30.59 0.14 -1.90 16 4 C -0.56 -12.92 2.57 30.59 0.08 -12.84 16 5 H 0.15 3.15 7.74 -2.39 -0.02 3.13 16 6 C -0.15 -2.80 9.06 71.98 0.65 -2.14 16 7 S 2.59 90.35 4.53 -56.49 -0.26 90.10 16 8 O -0.99 -42.21 15.14 -127.65 -1.93 -44.15 16 9 O -1.00 -39.00 17.96 -127.65 -2.29 -41.29 16 10 N -1.10 -39.95 4.06 -172.53 -0.70 -40.65 16 11 C 0.20 7.81 2.35 44.24 0.10 7.92 16 12 H 0.08 3.13 7.34 -2.39 -0.02 3.11 16 13 C 0.04 1.94 4.55 29.85 0.14 2.07 16 14 C -0.53 -29.97 8.84 25.60 0.23 -29.74 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.01 0.58 5.46 84.66 0.46 1.04 16 17 N -0.92 -55.42 13.29 21.45 0.28 -55.13 16 18 Si 0.94 46.15 29.54 68.60 2.03 48.18 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 22 C -0.11 -3.24 4.07 -19.87 -0.08 -3.32 16 23 C -0.11 -3.02 6.40 22.27 0.14 -2.88 16 24 C -0.12 -2.54 10.04 22.27 0.22 -2.32 16 25 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 26 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 27 C -0.13 -3.48 9.67 22.27 0.22 -3.27 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.49 5.61 -2.39 -0.01 1.48 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 36 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.08 1.62 4.32 -2.38 -0.01 1.61 16 38 H 0.42 14.89 8.60 -96.74 -0.83 14.06 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 42 H 0.12 3.19 7.53 -2.92 -0.02 3.17 16 43 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.12 3.16 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -74.27 379.94 0.89 -73.38 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.13 Total: 26.74 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 3.64 Total: -57.18 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -0.42 Total: -95.78 kcal Atomic # 8 Polarization: -81.21 SS G_CDS: -4.23 Total: -85.43 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 90.35 SS G_CDS: -0.26 Total: 90.10 kcal Total: -74.27 0.89 -73.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582790038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.756 kcal (2) G-P(sol) polarization free energy of solvation -74.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds