Wall clock time and date at job start Tue Mar 31 2020 14:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46801 * 2 1 4 4 C 1.38283 * 119.97401 * 270.02223 * 3 2 1 5 5 C 1.38251 * 120.10715 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.05574 * 359.67923 * 5 4 3 7 7 C 1.38709 * 119.94588 * 0.57247 * 6 5 4 8 8 O 1.35905 * 120.05526 * 179.71894 * 7 6 5 9 9 C 1.42896 * 117.00186 * 359.73016 * 8 7 6 10 10 C 1.50693 * 109.47069 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 C 1.38128 * 119.96510 * 90.00712 * 3 2 1 28 28 H 1.08997 * 109.47134 * 299.99614 * 1 2 3 29 29 H 1.09001 * 109.47569 * 59.99710 * 1 2 3 30 30 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46848 * 240.00567 * 2 1 3 32 32 H 1.08993 * 109.47571 * 120.00640 * 2 1 3 33 33 H 1.07996 * 119.94489 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.96752 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.02872 * 180.29797 * 6 5 4 36 36 H 1.09004 * 109.46992 * 59.99635 * 9 8 7 37 37 H 1.08999 * 109.47382 * 299.99989 * 9 8 7 38 38 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 39 39 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 40 40 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 41 41 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 44 44 H 1.07991 * 120.03143 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0724 -1.1979 5 6 2.7233 3.3757 -1.2011 6 6 2.9495 4.0326 -0.0069 7 6 2.7247 3.3795 1.1960 8 8 2.9519 4.0217 2.3720 9 6 3.4276 5.3670 2.2952 10 6 3.6198 5.9120 3.6870 11 8 3.3741 5.2167 4.6498 12 7 4.0657 7.1719 3.8617 13 6 4.3299 7.6447 5.1432 14 6 3.5523 7.2329 6.2146 15 6 3.8160 7.7102 7.4847 16 6 4.8603 8.5989 7.7036 17 6 5.6445 9.0171 6.6679 18 6 5.3973 8.5463 5.3649 19 6 6.2029 8.9740 4.2887 20 1 6.3035 8.3544 3.4099 21 6 6.8716 10.2015 4.3598 22 7 6.4099 11.1545 5.1284 23 14 8.4234 10.4791 3.3577 24 1 8.9358 11.8501 3.6084 25 1 9.4534 9.4858 3.7548 26 1 8.1147 10.3219 1.9137 27 6 2.2623 2.0713 1.1966 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.0809 1.5623 -2.1324 34 1 2.9025 3.8822 -2.1379 35 1 3.3053 5.0523 -0.0099 36 1 2.7002 5.9797 1.7627 37 1 4.3783 5.3864 1.7625 38 1 4.2023 7.7488 3.0940 39 1 2.7372 6.5424 6.0560 40 1 3.2044 7.3887 8.3148 41 1 5.0537 8.9624 8.7020 42 1 6.4546 9.7082 6.8483 43 1 5.5635 11.0396 5.5882 44 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583286904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:51 Heat of formation + Delta-G solvation = -41.264383 kcal Electronic energy + Delta-G solvation = -25885.159585 eV Core-core repulsion = 22152.847324 eV Total energy + Delta-G solvation = -3732.312261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47998 -39.53624 -37.99432 -37.13466 -34.09374 -33.98891 -33.86679 -30.96084 -29.52808 -29.37714 -29.16952 -27.41622 -25.10858 -24.17356 -22.66581 -22.04849 -21.17356 -20.66922 -19.58890 -18.10184 -18.01866 -17.08549 -16.29911 -16.27483 -15.91750 -15.77554 -14.85616 -14.76339 -14.45320 -14.33611 -14.12110 -13.75776 -13.65559 -13.42059 -13.21962 -12.81181 -12.69898 -12.35832 -12.21507 -12.05886 -12.02277 -11.62387 -11.52331 -11.26518 -11.12591 -11.01367 -10.91526 -10.74085 -10.48687 -10.36334 -9.76391 -9.41717 -9.11807 -8.98865 -8.93364 -8.32056 -7.67483 -7.45025 -7.03706 -4.54364 1.13823 1.30004 2.45937 2.72241 2.75808 3.07866 3.17011 3.22988 3.28618 3.58141 3.91768 3.98806 4.48763 4.50278 4.61575 4.75058 4.91329 4.92945 5.05057 5.06409 5.10311 5.12999 5.24953 5.36920 5.40637 5.42566 5.62625 5.70113 5.87064 5.93801 6.15691 6.16814 6.25638 6.27681 6.41694 6.43497 6.59214 6.75563 6.88982 7.07274 7.26653 7.32035 7.46479 7.65889 7.70171 7.86148 7.95523 8.15219 8.25125 8.58812 8.70169 8.85184 9.94264 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.002588 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.991753 B =10817.330931 C =12300.410924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.217 4.217 7 C 0.137 3.863 8 O -0.287 6.287 9 C 0.044 3.956 10 C 0.499 3.501 11 O -0.518 6.518 12 N -0.631 5.631 13 C 0.003 3.997 14 C -0.071 4.071 15 C -0.240 4.240 16 C -0.090 4.090 17 C -0.208 4.208 18 C 0.092 3.908 19 C -0.525 4.525 20 H 0.074 0.926 21 C 0.041 3.959 22 N -0.792 5.792 23 Si 1.064 2.936 24 H -0.273 1.273 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.149 4.149 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.403 0.597 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.301 0.699 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -12.451 -13.643 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.179 4.179 5 C -0.095 4.095 6 C -0.235 4.235 7 C 0.091 3.909 8 O -0.199 6.199 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.393 6.393 12 N -0.275 5.275 13 C -0.090 4.090 14 C -0.091 4.091 15 C -0.260 4.260 16 C -0.109 4.109 17 C -0.227 4.227 18 C 0.088 3.912 19 C -0.554 4.554 20 H 0.092 0.908 21 C -0.182 4.182 22 N -0.415 5.415 23 Si 0.887 3.113 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.168 4.168 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.239 0.761 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.567 -11.886 -13.049 18.508 hybrid contribution -1.004 -0.565 -0.211 1.171 sum -6.570 -12.451 -13.261 19.340 Atomic orbital electron populations 1.21750 0.94523 1.01761 1.02419 1.20562 0.96336 0.92290 1.03063 1.19672 0.96695 0.95922 0.92218 1.20900 1.04115 0.95427 0.97436 1.20910 0.96749 0.94455 0.97342 1.21299 1.08590 1.01396 0.92260 1.19085 0.94914 0.92272 0.84618 1.86173 1.80339 1.25999 1.27406 1.22497 1.01029 0.82758 0.97207 1.19934 0.79567 0.82270 0.89843 1.90696 1.49231 1.58068 1.41346 1.42611 1.64083 1.11751 1.09029 1.17547 0.99619 1.08646 0.83157 1.20713 0.97821 0.98327 0.92246 1.20273 1.03555 1.06276 0.95905 1.20419 0.95963 0.97176 0.97328 1.20758 1.02657 1.07245 0.92089 1.17477 0.88740 0.91808 0.93156 1.20322 1.26237 1.05415 1.03377 0.90771 1.26979 1.02550 0.91933 0.96741 1.70470 1.19384 1.32460 1.19235 0.83646 0.74486 0.77401 0.75740 1.19802 1.20001 1.20158 1.20300 1.05056 0.92647 0.98771 0.92325 0.92529 0.92328 0.90829 0.90750 0.86109 0.85776 0.85334 0.89264 0.88997 0.76124 0.87110 0.88892 0.89078 0.87279 0.88543 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.04 -0.46 5.13 -104.64 -0.54 -0.99 16 4 C -0.16 -1.52 9.70 -39.56 -0.38 -1.90 16 5 C -0.08 -0.75 10.04 -39.61 -0.40 -1.14 16 6 C -0.22 -2.45 9.04 -39.44 -0.36 -2.81 16 7 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 8 O -0.29 -4.61 9.67 -39.35 -0.38 -4.99 16 9 C 0.04 0.62 5.22 36.00 0.19 0.81 16 10 C 0.50 9.56 7.75 -10.98 -0.09 9.48 16 11 O -0.52 -12.03 13.91 -14.35 -0.20 -12.23 16 12 N -0.63 -12.52 4.90 -9.48 -0.05 -12.57 16 13 C 0.00 0.08 6.33 -83.17 -0.53 -0.44 16 14 C -0.07 -1.70 8.69 -39.44 -0.34 -2.05 16 15 C -0.24 -5.55 10.04 -39.36 -0.39 -5.94 16 16 C -0.09 -2.09 9.97 -39.99 -0.40 -2.49 16 17 C -0.21 -5.18 7.87 -39.28 -0.31 -5.49 16 18 C 0.09 2.33 5.32 -106.65 -0.57 1.76 16 19 C -0.53 -12.80 8.35 -37.86 -0.32 -13.12 16 20 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 21 C 0.04 0.96 4.95 -17.33 -0.09 0.88 16 22 N -0.79 -19.89 12.32 55.55 0.68 -19.20 16 23 Si 1.06 20.29 30.00 -169.99 -5.10 15.19 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 27 C -0.15 -1.84 9.64 -39.43 -0.38 -2.22 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 36 H 0.09 1.01 7.65 -51.93 -0.40 0.61 16 37 H 0.09 1.10 7.67 -51.93 -0.40 0.70 16 38 H 0.40 6.94 7.95 -40.82 -0.32 6.62 16 39 H 0.11 2.65 6.20 -52.49 -0.33 2.32 16 40 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.78 6.45 -52.49 -0.34 2.44 16 43 H 0.30 7.76 6.62 -40.82 -0.27 7.49 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -30.17 369.92 -10.22 -40.38 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.79 Total: 13.41 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -4.96 Total: -25.57 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.64 Total: -31.77 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.58 Total: -17.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.10 Total: 15.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.17 -10.22 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583286904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds