Wall clock time and date at job start Tue Mar 31 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46801 * 2 1 4 4 C 1.38283 * 119.97401 * 270.02223 * 3 2 1 5 5 C 1.38251 * 120.10715 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.05574 * 359.67923 * 5 4 3 7 7 C 1.38709 * 119.94588 * 0.57247 * 6 5 4 8 8 O 1.35905 * 120.05526 * 179.71894 * 7 6 5 9 9 C 1.42896 * 117.00186 * 359.73016 * 8 7 6 10 10 C 1.50693 * 109.47069 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 C 1.38128 * 119.96510 * 90.00712 * 3 2 1 28 28 H 1.08997 * 109.47134 * 299.99614 * 1 2 3 29 29 H 1.09001 * 109.47569 * 59.99710 * 1 2 3 30 30 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46848 * 240.00567 * 2 1 3 32 32 H 1.08993 * 109.47571 * 120.00640 * 2 1 3 33 33 H 1.07996 * 119.94489 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.96752 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.02872 * 180.29797 * 6 5 4 36 36 H 1.09004 * 109.46992 * 59.99635 * 9 8 7 37 37 H 1.08999 * 109.47382 * 299.99989 * 9 8 7 38 38 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 39 39 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 40 40 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 41 41 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 44 44 H 1.07991 * 120.03143 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0724 -1.1979 5 6 2.7233 3.3757 -1.2011 6 6 2.9495 4.0326 -0.0069 7 6 2.7247 3.3795 1.1960 8 8 2.9519 4.0217 2.3720 9 6 3.4276 5.3670 2.2952 10 6 3.6198 5.9120 3.6870 11 8 3.3741 5.2167 4.6498 12 7 4.0657 7.1719 3.8617 13 6 4.3299 7.6447 5.1432 14 6 3.5523 7.2329 6.2146 15 6 3.8160 7.7102 7.4847 16 6 4.8603 8.5989 7.7036 17 6 5.6445 9.0171 6.6679 18 6 5.3973 8.5463 5.3649 19 6 6.2029 8.9740 4.2887 20 1 6.3035 8.3544 3.4099 21 6 6.8716 10.2015 4.3598 22 7 6.4099 11.1545 5.1284 23 14 8.4234 10.4791 3.3577 24 1 8.9358 11.8501 3.6084 25 1 9.4534 9.4858 3.7548 26 1 8.1147 10.3219 1.9137 27 6 2.2623 2.0713 1.1966 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.0809 1.5623 -2.1324 34 1 2.9025 3.8822 -2.1379 35 1 3.3053 5.0523 -0.0099 36 1 2.7002 5.9797 1.7627 37 1 4.3783 5.3864 1.7625 38 1 4.2023 7.7488 3.0940 39 1 2.7372 6.5424 6.0560 40 1 3.2044 7.3887 8.3148 41 1 5.0537 8.9624 8.7020 42 1 6.4546 9.7082 6.8483 43 1 5.5635 11.0396 5.5882 44 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583286904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:50 Heat of formation + Delta-G solvation = -55.611647 kcal Electronic energy + Delta-G solvation = -25885.781729 eV Core-core repulsion = 22152.847324 eV Total energy + Delta-G solvation = -3732.934405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66297 -40.89794 -39.35650 -38.50732 -35.83048 -35.61379 -34.72507 -31.98518 -31.27772 -30.80749 -30.04237 -28.80282 -26.92869 -24.91550 -23.66911 -23.43840 -22.86451 -21.80157 -21.12926 -19.89032 -19.03391 -18.56082 -17.60749 -17.47636 -17.02569 -16.83767 -16.56554 -16.06346 -15.66452 -15.57589 -15.49414 -14.96073 -14.69511 -14.49431 -14.36737 -14.17571 -14.06469 -13.87396 -13.72000 -13.36846 -13.03661 -12.75995 -12.69947 -12.47463 -12.37568 -12.17003 -11.98379 -11.95763 -11.85974 -11.63859 -11.52032 -11.13747 -10.86027 -10.66493 -9.78396 -9.57905 -9.32036 -9.20028 -8.86679 -6.43637 0.34438 0.46142 0.69793 0.89294 1.48564 1.54325 1.64469 1.67800 1.81946 2.33706 2.68733 2.70469 2.77613 3.49909 3.56634 3.80368 3.87635 3.95904 4.02589 4.13194 4.24481 4.37046 4.38421 4.38523 4.47830 4.52021 4.64116 4.65739 4.74729 4.91768 5.03964 5.08007 5.08317 5.13138 5.24947 5.32807 5.37968 5.45945 5.48311 5.62670 5.66229 5.76435 5.81565 5.88187 5.99692 6.09923 6.31346 6.34436 6.56241 6.79810 6.89097 7.22737 8.04509 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.002588 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.991753 B =10817.330931 C =12300.410924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.158 4.158 5 C -0.077 4.077 6 C -0.222 4.222 7 C 0.108 3.892 8 O -0.321 6.321 9 C 0.055 3.945 10 C 0.497 3.503 11 O -0.564 6.564 12 N -0.627 5.627 13 C -0.001 4.001 14 C -0.088 4.088 15 C -0.243 4.243 16 C -0.094 4.094 17 C -0.227 4.227 18 C 0.066 3.934 19 C -0.541 4.541 20 H 0.084 0.916 21 C 0.007 3.993 22 N -0.812 5.812 23 Si 1.114 2.886 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.249 1.249 27 C -0.172 4.172 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.416 0.584 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.286 0.714 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -13.165 -16.723 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.047 4.047 4 C -0.176 4.176 5 C -0.094 4.094 6 C -0.240 4.240 7 C 0.064 3.936 8 O -0.234 6.234 9 C -0.023 4.023 10 C 0.285 3.715 11 O -0.443 6.443 12 N -0.272 5.272 13 C -0.096 4.096 14 C -0.108 4.108 15 C -0.263 4.263 16 C -0.112 4.112 17 C -0.247 4.247 18 C 0.062 3.938 19 C -0.568 4.568 20 H 0.102 0.898 21 C -0.210 4.210 22 N -0.435 5.435 23 Si 0.932 3.068 24 H -0.201 1.201 25 H -0.196 1.196 26 H -0.173 1.173 27 C -0.191 4.191 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.254 0.746 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.344 -12.606 -16.161 21.182 hybrid contribution -1.175 -0.454 0.748 1.465 sum -6.519 -13.060 -15.413 21.228 Atomic orbital electron populations 1.21736 0.94029 1.02601 1.01880 1.20629 0.96681 0.90974 1.03931 1.19974 0.96032 0.96976 0.91762 1.21299 1.02712 0.95515 0.98113 1.21313 0.95595 0.94615 0.97925 1.21542 1.08394 1.02224 0.91879 1.19338 0.96869 0.92814 0.84605 1.86104 1.81238 1.26691 1.29407 1.22459 1.03445 0.82817 0.93582 1.20814 0.77719 0.81400 0.91609 1.90667 1.51014 1.59073 1.43520 1.42585 1.63973 1.12498 1.08123 1.17720 0.98975 1.08003 0.84865 1.20875 0.98187 0.98749 0.93033 1.20595 1.03584 1.05719 0.96397 1.20673 0.95504 0.96864 0.98199 1.20804 1.03136 1.07867 0.92889 1.17805 0.89565 0.92667 0.93755 1.20542 1.26722 1.05928 1.03651 0.89758 1.28341 1.04607 0.91382 0.96686 1.70576 1.19074 1.33302 1.20551 0.83024 0.70962 0.77040 0.75823 1.20122 1.19599 1.17317 1.20461 1.06290 0.92885 0.99426 0.93785 0.92126 0.90830 0.88893 0.90965 0.83356 0.82844 0.83662 0.85888 0.86295 0.74623 0.87492 0.86591 0.86522 0.88497 0.90138 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.08 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.05 -0.89 5.13 -19.88 -0.10 -1.00 16 4 C -0.16 -2.52 9.70 22.28 0.22 -2.30 16 5 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.22 -4.51 9.04 22.36 0.20 -4.31 16 7 C 0.11 2.88 6.69 22.51 0.15 3.03 16 8 O -0.32 -10.33 9.67 -73.44 -0.71 -11.04 16 9 C 0.05 1.49 5.22 71.23 0.37 1.86 16 10 C 0.50 19.06 7.75 87.65 0.68 19.74 16 11 O -0.56 -26.92 13.91 16.01 0.22 -26.69 16 12 N -0.63 -24.84 4.90 -302.28 -1.48 -26.32 16 13 C 0.00 -0.07 6.33 38.88 0.25 0.18 16 14 C -0.09 -4.31 8.69 22.36 0.19 -4.11 16 15 C -0.24 -11.27 10.04 22.42 0.22 -11.04 16 16 C -0.09 -4.37 9.97 22.01 0.22 -4.15 16 17 C -0.23 -11.59 7.87 22.47 0.18 -11.41 16 18 C 0.07 3.40 5.32 -21.18 -0.11 3.29 16 19 C -0.54 -26.36 8.35 23.38 0.20 -26.16 16 20 H 0.08 3.82 7.39 -2.91 -0.02 3.80 16 21 C 0.01 0.35 4.95 85.26 0.42 0.77 16 22 N -0.81 -41.32 12.32 21.83 0.27 -41.05 16 23 Si 1.11 39.78 30.00 68.60 2.06 41.84 16 24 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.25 -7.81 7.11 99.48 0.71 -7.10 16 27 C -0.17 -4.27 9.64 22.37 0.22 -4.06 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.09 0.92 8.09 -2.38 -0.02 0.90 16 32 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 36 H 0.12 2.48 7.65 -2.38 -0.02 2.46 16 37 H 0.12 2.57 7.67 -2.39 -0.02 2.55 16 38 H 0.42 14.00 7.95 -92.71 -0.74 13.26 16 39 H 0.11 5.26 6.20 -2.91 -0.02 5.24 16 40 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.10 5.10 6.45 -2.91 -0.02 5.08 16 43 H 0.29 15.23 6.62 -92.70 -0.61 14.62 16 44 H 0.12 3.06 8.06 -2.92 -0.02 3.04 16 Total: -1.00 -67.69 369.92 5.22 -62.48 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: 0.44 Total: 43.58 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 4.42 Total: -42.80 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.21 Total: -67.37 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.49 Total: -37.73 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.06 Total: 41.84 kcal Total: -67.69 5.22 -62.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583286904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.865 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds