Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46847 * 2 1 4 4 C 1.53002 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47228 * 305.00359 * 4 3 2 6 6 C 1.52993 * 109.47356 * 184.99944 * 4 3 2 7 7 C 1.53001 * 109.47293 * 65.08718 * 6 4 3 8 8 S 1.81401 * 109.47124 * 64.99955 * 4 3 2 9 9 O 1.42096 * 110.54639 * 64.08953 * 8 4 3 10 10 O 1.42103 * 110.54273 * 287.33939 * 8 4 3 11 11 N 1.65600 * 104.45341 * 175.71539 * 8 4 3 12 12 C 1.46507 * 119.99994 * 64.71895 * 11 8 4 13 13 C 1.50694 * 109.46991 * 165.27833 * 12 11 8 14 14 C 1.38642 * 119.75121 * 269.72981 * 13 12 11 15 15 C 1.37616 * 120.24559 * 179.72383 * 14 13 12 16 16 C 1.40712 * 119.74836 * 0.56918 * 15 14 13 17 17 C 1.41395 * 120.24888 * 179.68111 * 16 15 14 18 18 H 1.08002 * 120.00275 * 209.13287 * 17 16 15 19 19 C 1.39952 * 119.99592 * 29.12717 * 17 16 15 20 20 N 1.30828 * 119.99865 * 10.13619 * 19 17 16 21 21 Si 1.86796 * 119.99674 * 190.13502 * 19 17 16 22 22 H 1.48497 * 109.47310 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47144 * 120.00537 * 21 19 17 24 24 H 1.48507 * 109.47020 * 240.00242 * 21 19 17 25 25 C 1.40724 * 119.50878 * 359.70852 * 16 15 14 26 26 C 1.37615 * 119.74276 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.47304 * 300.00406 * 1 2 3 28 28 H 1.09003 * 109.47067 * 59.99525 * 1 2 3 29 29 H 1.08999 * 109.47672 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46904 * 239.99949 * 2 1 3 31 31 H 1.08997 * 109.46717 * 119.99838 * 2 1 3 32 32 H 1.08993 * 109.47262 * 60.00157 * 3 2 1 33 33 H 1.08997 * 109.47330 * 299.99462 * 3 2 1 34 34 H 1.09004 * 109.47294 * 185.08874 * 6 4 3 35 35 H 1.09000 * 109.47265 * 305.08300 * 6 4 3 36 36 H 1.08994 * 109.47353 * 183.57439 * 7 6 4 37 37 H 1.09003 * 109.46798 * 303.57214 * 7 6 4 38 38 H 1.08997 * 109.47240 * 63.57208 * 7 6 4 39 39 H 0.96996 * 119.99962 * 245.00117 * 11 8 4 40 40 H 1.08997 * 109.47445 * 285.28651 * 12 11 8 41 41 H 1.09010 * 109.46377 * 45.28027 * 12 11 8 42 42 H 1.07999 * 119.87026 * 359.97438 * 14 13 12 43 43 H 1.07996 * 120.12303 * 180.27848 * 15 14 13 44 44 H 0.96995 * 119.99565 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.12187 * 179.97438 * 25 16 15 46 46 H 1.08004 * 119.86864 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0801 2.8794 0.1251 7 6 3.6778 3.4461 1.4882 8 16 4.1740 0.7200 -1.5510 9 8 3.7916 1.5242 -2.6583 10 8 3.9663 -0.6858 -1.5602 11 7 5.8194 0.8891 -1.4724 12 6 6.5808 0.1762 -0.4436 13 6 8.0457 0.1993 -0.7963 14 6 8.5839 -0.8200 -1.5667 15 6 9.9192 -0.8061 -1.8997 16 6 10.7412 0.2415 -1.4450 17 6 12.1160 0.2627 -1.7751 18 1 12.8245 0.7303 -1.1075 19 6 12.5584 -0.3223 -2.9670 20 7 11.6912 -0.7106 -3.8664 21 14 14.3871 -0.5487 -3.2737 22 1 15.1518 -0.0315 -2.1106 23 1 14.6831 -1.9922 -3.4578 24 1 14.7800 0.1971 -4.4963 25 6 10.1852 1.2677 -0.6588 26 6 8.8460 1.2368 -0.3436 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1662 2.8887 0.0339 35 1 3.6440 3.4903 -0.6654 36 1 3.9855 4.4897 1.5530 37 1 2.5962 3.3783 1.6049 38 1 4.1650 2.8739 2.2776 39 1 6.2787 1.4634 -2.1050 40 1 6.4315 0.6618 0.5208 41 1 6.2367 -0.8566 -0.3874 42 1 7.9521 -1.6257 -1.9102 43 1 10.3354 -1.5987 -2.5036 44 1 11.9980 -1.1157 -4.6926 45 1 10.8072 2.0763 -0.3042 46 1 8.4170 2.0235 0.2593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583750538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = -105.021141 kcal Electronic energy + Delta-G solvation = -25582.531639 eV Core-core repulsion = 21982.898628 eV Total energy + Delta-G solvation = -3599.633011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60169 -38.20309 -38.00515 -37.01184 -36.57749 -35.07403 -34.11301 -31.74459 -31.12240 -29.67533 -28.19354 -26.01969 -25.17943 -22.86881 -22.50773 -22.25419 -21.79123 -20.11813 -19.20778 -18.88155 -17.85609 -17.28700 -17.09087 -16.19872 -15.96866 -15.73106 -15.64931 -15.48153 -15.22175 -14.86288 -14.30949 -14.16812 -13.97824 -13.87923 -13.79485 -13.65709 -13.41773 -13.24858 -13.19100 -13.09052 -12.95545 -12.81031 -12.71541 -12.50932 -12.30783 -12.16997 -12.05631 -11.82605 -11.70853 -11.56740 -11.44606 -11.24554 -11.09728 -11.07819 -10.24909 -9.35903 -9.19347 -8.59375 -6.37327 -0.70885 0.88593 1.16327 1.37920 1.45387 1.52674 1.89089 2.20782 2.75510 2.83468 3.15258 3.45862 3.62787 3.74503 3.96331 4.05242 4.16358 4.21889 4.36090 4.39514 4.50740 4.54555 4.55701 4.64362 4.72778 4.76566 4.80861 4.83705 4.95995 5.06455 5.10330 5.16888 5.17305 5.18237 5.20916 5.27253 5.38656 5.39239 5.45835 5.47074 5.72447 5.93931 6.10570 6.12612 6.23358 6.39841 6.72046 6.94837 7.03630 8.36384 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.002649 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.981279 B =10567.194841 C =11096.341281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C -0.109 4.109 4 C -0.560 4.560 5 H 0.162 0.838 6 C -0.115 4.115 7 C -0.145 4.145 8 S 2.600 3.400 9 O -0.999 6.999 10 O -0.994 6.994 11 N -1.114 6.114 12 C 0.180 3.820 13 C -0.210 4.210 14 C -0.096 4.096 15 C -0.187 4.187 16 C 0.080 3.920 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.028 3.972 20 N -0.835 5.835 21 Si 0.984 3.016 22 H -0.256 1.256 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.237 4.237 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.416 0.584 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.285 0.715 45 H 0.101 0.899 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 5.812 10.803 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C -0.148 4.148 4 C -0.674 4.674 5 H 0.179 0.821 6 C -0.153 4.153 7 C -0.203 4.203 8 S 2.698 3.302 9 O -0.989 6.989 10 O -0.984 6.984 11 N -0.873 5.873 12 C 0.056 3.944 13 C -0.213 4.213 14 C -0.115 4.115 15 C -0.207 4.207 16 C 0.077 3.923 17 C -0.528 4.528 18 H 0.095 0.905 19 C -0.185 4.185 20 N -0.462 5.462 21 Si 0.805 3.195 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.257 4.257 26 C -0.089 4.089 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.851 5.150 9.956 21.079 hybrid contribution 1.440 0.004 -0.577 1.551 sum -16.411 5.154 9.379 19.593 Atomic orbital electron populations 1.21759 0.93799 1.02539 1.02802 1.22030 0.98436 0.96313 1.03296 1.21650 0.88928 0.98123 1.06066 1.30284 1.06920 1.09591 1.20584 0.82075 1.21431 1.02130 0.90466 1.01301 1.21774 1.02449 1.01225 0.94843 1.05241 0.73115 0.74156 0.77677 1.93516 1.82419 1.71668 1.51345 1.93531 1.84965 1.32101 1.87830 1.55586 1.24912 1.61766 1.44996 1.20018 0.87927 0.96420 0.90064 1.19318 0.94927 0.98993 1.08044 1.20857 0.94637 0.98224 0.97790 1.21310 0.94167 0.99925 1.05257 1.18040 0.93898 0.90244 0.90071 1.19896 0.93747 1.34081 1.05067 0.90546 1.26779 1.04705 0.92191 0.94806 1.69875 1.38017 1.31339 1.06970 0.85120 0.76423 0.78846 0.79070 1.17964 1.19173 1.19289 1.21275 0.95919 0.99863 1.08630 1.20778 0.92821 0.97040 0.98269 0.90727 0.92596 0.92186 0.93238 0.89791 0.86277 0.90746 0.89785 0.90568 0.91641 0.91235 0.91654 0.74938 0.88547 0.91228 0.88493 0.88533 0.90456 0.88097 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.16 -2.77 5.64 30.60 0.17 -2.59 16 3 C -0.11 -1.59 4.55 30.60 0.14 -1.45 16 4 C -0.56 -9.15 2.39 30.59 0.07 -9.08 16 5 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 6 C -0.11 -1.67 5.34 30.59 0.16 -1.51 16 7 C -0.14 -1.52 9.76 71.98 0.70 -0.82 16 8 S 2.60 69.97 4.42 -56.49 -0.25 69.72 16 9 O -1.00 -33.20 18.06 -127.65 -2.31 -35.50 16 10 O -0.99 -33.14 15.57 -127.65 -1.99 -35.12 16 11 N -1.11 -31.16 5.23 -190.78 -1.00 -32.16 16 12 C 0.18 5.13 6.24 85.63 0.53 5.67 16 13 C -0.21 -8.02 5.30 -19.68 -0.10 -8.13 16 14 C -0.10 -4.37 9.67 22.22 0.21 -4.16 16 15 C -0.19 -9.84 8.66 22.73 0.20 -9.64 16 16 C 0.08 4.24 5.55 -21.29 -0.12 4.12 16 17 C -0.50 -26.71 9.06 23.46 0.21 -26.49 16 18 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 19 C 0.03 1.45 5.26 85.26 0.45 1.90 16 20 N -0.84 -44.66 10.83 21.83 0.24 -44.43 16 21 Si 0.98 38.72 29.57 68.60 2.03 40.74 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 25 C -0.24 -10.92 9.80 22.73 0.22 -10.70 16 26 C -0.07 -2.70 9.67 22.22 0.21 -2.48 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.11 5.81 -2.39 -0.01 1.10 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 1.11 6.28 -2.39 -0.02 1.09 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.23 7.59 -2.39 -0.02 1.21 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.58 6.31 -2.39 -0.02 0.57 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.42 12.23 8.61 -96.75 -0.83 11.40 16 40 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.07 2.02 7.64 -2.38 -0.02 2.00 16 42 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.10 5.45 6.23 -2.91 -0.02 5.43 16 44 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 45 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -69.02 381.96 0.64 -68.38 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.13 Total: 35.07 kcal Atomic # 6 Polarization: -70.48 SS G_CDS: 3.79 Total: -66.70 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -0.76 Total: -76.59 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -4.29 Total: -70.63 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 69.97 SS G_CDS: -0.25 Total: 69.72 kcal Total: -69.02 0.64 -68.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583750538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.643 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds