Wall clock time and date at job start Tue Mar 31 2020 15:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47348 * 2 1 4 4 C 1.52997 * 109.46994 * 185.80634 * 3 2 1 5 5 H 1.08998 * 109.47028 * 53.64624 * 4 3 2 6 6 C 1.53003 * 109.47138 * 173.64288 * 4 3 2 7 7 C 1.52994 * 109.47119 * 186.24405 * 6 4 3 8 8 S 1.81397 * 109.47130 * 293.64414 * 4 3 2 9 9 O 1.42099 * 110.54423 * 177.31217 * 8 4 3 10 10 O 1.42099 * 110.54315 * 314.06512 * 8 4 3 11 11 N 1.65609 * 104.44967 * 65.69068 * 8 4 3 12 12 C 1.46493 * 119.99756 * 63.18354 * 11 8 4 13 13 C 1.50703 * 109.46921 * 164.32304 * 12 11 8 14 14 C 1.38627 * 119.75272 * 269.73103 * 13 12 11 15 15 C 1.37619 * 120.24757 * 179.71855 * 14 13 12 16 16 C 1.40712 * 119.74539 * 0.57255 * 15 14 13 17 17 C 1.41398 * 120.24386 * 179.67800 * 16 15 14 18 18 H 1.08001 * 119.99877 * 210.34965 * 17 16 15 19 19 C 1.39944 * 120.00017 * 30.36091 * 17 16 15 20 20 N 1.30827 * 120.00109 * 8.80666 * 19 17 16 21 21 Si 1.86798 * 119.99818 * 188.81462 * 19 17 16 22 22 H 1.48495 * 109.47319 * 59.99892 * 21 19 17 23 23 H 1.48510 * 109.47116 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47297 * 299.99381 * 21 19 17 25 25 C 1.40710 * 119.51332 * 359.70239 * 16 15 14 26 26 C 1.37622 * 119.74426 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47037 * 60.00014 * 1 2 3 28 28 H 1.08991 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46769 * 300.00520 * 1 2 3 30 30 H 1.08994 * 109.46731 * 239.99695 * 2 1 3 31 31 H 1.09003 * 109.46577 * 120.00180 * 2 1 3 32 32 H 1.08998 * 109.47251 * 65.80075 * 3 2 1 33 33 H 1.09001 * 109.46854 * 305.80342 * 3 2 1 34 34 H 1.09007 * 109.46826 * 66.24936 * 6 4 3 35 35 H 1.08995 * 109.47318 * 306.25083 * 6 4 3 36 36 H 1.08997 * 109.47440 * 292.67933 * 7 6 4 37 37 H 1.09006 * 109.46963 * 172.67462 * 7 6 4 38 38 H 1.09011 * 109.47067 * 52.68277 * 7 6 4 39 39 H 0.96993 * 119.99326 * 243.19114 * 11 8 4 40 40 H 1.09001 * 109.47497 * 284.32661 * 12 11 8 41 41 H 1.09003 * 109.47235 * 44.33108 * 12 11 8 42 42 H 1.07999 * 119.87755 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.12635 * 180.27439 * 15 14 13 44 44 H 0.96998 * 119.99984 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.13350 * 179.97438 * 25 16 15 46 46 H 1.08001 * 119.87890 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5631 1.4449 -0.1459 5 1 3.8448 0.8645 -1.0245 6 6 4.0580 2.8839 -0.3051 7 6 5.5580 2.8770 -0.6062 8 16 4.3133 0.7074 1.3319 9 8 5.7260 0.6417 1.1940 10 8 3.7158 1.2326 2.5093 11 7 3.8255 -0.8748 1.2972 12 6 4.2420 -1.7456 0.1953 13 6 4.0081 -3.1848 0.5765 14 6 5.0123 -3.9006 1.2098 15 6 4.8076 -5.2136 1.5676 16 6 3.5778 -5.8328 1.2774 17 6 3.3587 -7.1833 1.6342 18 1 2.6998 -7.7988 1.0396 19 6 3.9953 -7.7224 2.7578 20 7 4.6532 -6.9406 3.5748 21 14 3.9060 -9.5583 3.0909 22 1 4.5038 -10.2980 1.9505 23 1 4.6570 -9.8732 4.3328 24 1 2.4866 -9.9632 3.2541 25 6 2.5678 -5.0982 0.6291 26 6 2.7925 -3.7846 0.2856 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7641 1.9255 0.9373 33 1 1.5944 1.9854 -0.8335 34 1 3.8751 3.4351 0.6173 35 1 3.5247 3.3627 -1.1263 36 1 6.1023 2.5180 0.2672 37 1 5.8847 3.8885 -0.8477 38 1 5.7556 2.2195 -1.4530 39 1 3.2640 -1.2248 2.0065 40 1 3.6616 -1.5068 -0.6959 41 1 5.3016 -1.5916 -0.0091 42 1 5.9572 -3.4249 1.4269 43 1 5.5897 -5.7682 2.0649 44 1 5.0942 -7.3142 4.3538 45 1 1.6203 -5.5636 0.4012 46 1 2.0190 -3.2189 -0.2125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583750539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:18 Heat of formation + Delta-G solvation = -79.422900 kcal Electronic energy + Delta-G solvation = -26144.730752 eV Core-core repulsion = 22546.207765 eV Total energy + Delta-G solvation = -3598.522988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.96573 -37.20847 -36.88285 -35.82587 -35.21424 -33.68582 -33.10182 -30.05052 -29.36054 -29.16090 -26.55345 -24.55416 -23.59078 -22.19410 -21.38259 -20.97773 -20.13914 -19.03154 -17.89074 -17.35370 -16.85733 -16.20717 -15.39176 -14.88975 -14.66008 -14.43094 -14.39056 -14.07081 -14.00724 -13.76648 -13.60770 -12.88105 -12.73633 -12.65536 -12.48635 -12.36867 -12.17785 -12.01448 -11.97643 -11.85359 -11.61215 -11.50519 -11.44227 -11.17835 -11.11715 -11.04080 -10.87065 -10.79443 -10.59923 -10.44868 -10.24685 -9.71668 -9.44035 -9.28366 -8.91804 -7.55270 -7.36986 -6.76328 -4.46022 0.37302 2.55229 2.94981 2.99560 3.04352 3.06596 3.23587 3.84549 3.89766 4.05769 4.26913 4.56872 4.64993 4.72250 4.89970 4.99893 5.05043 5.20895 5.33917 5.42233 5.49274 5.51540 5.57772 5.63691 5.68496 5.71416 5.75926 5.79601 6.00140 6.07671 6.08590 6.12076 6.18328 6.27533 6.34071 6.39573 6.88033 7.01987 7.17411 7.26266 7.32617 7.53887 7.74353 7.98551 8.00983 8.22340 8.57121 8.82511 8.88292 10.17290 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.003060 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.406382 B = 9149.214802 C = 9828.903535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C -0.099 4.099 4 C -0.592 4.592 5 H 0.136 0.864 6 C -0.106 4.106 7 C -0.185 4.185 8 S 2.606 3.394 9 O -0.958 6.958 10 O -0.965 6.965 11 N -1.106 6.106 12 C 0.178 3.822 13 C -0.226 4.226 14 C -0.085 4.085 15 C -0.159 4.159 16 C 0.116 3.884 17 C -0.462 4.462 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.799 5.799 21 Si 0.913 3.087 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.224 4.224 26 C -0.076 4.076 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.281 0.719 45 H 0.092 0.908 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 14.606 -7.455 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C -0.137 4.137 4 C -0.701 4.701 5 H 0.154 0.846 6 C -0.145 4.145 7 C -0.242 4.242 8 S 2.698 3.302 9 O -0.948 6.948 10 O -0.956 6.956 11 N -0.868 5.868 12 C 0.054 3.946 13 C -0.229 4.229 14 C -0.104 4.104 15 C -0.179 4.179 16 C 0.113 3.887 17 C -0.492 4.492 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.424 5.424 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.243 4.243 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.410 15.095 -6.729 16.701 hybrid contribution -0.691 -1.061 -0.093 1.270 sum -3.101 14.033 -6.822 15.909 Atomic orbital electron populations 1.21720 0.95303 1.02173 1.01470 1.22151 0.96987 0.95723 1.04509 1.21392 0.89592 0.98762 1.03940 1.30537 1.08056 1.08379 1.23102 0.84589 1.21318 0.97174 0.92245 1.03735 1.22230 0.94927 1.02973 1.04104 1.05204 0.74958 0.73943 0.76060 1.93563 1.28696 1.85536 1.86975 1.93565 1.78926 1.79227 1.43837 1.55911 1.68197 1.27017 1.35653 1.19996 0.98692 0.89150 0.86809 1.18888 0.97096 0.93541 1.13388 1.20636 0.96937 0.94942 0.97904 1.21383 0.98014 0.94341 1.04117 1.17679 0.90067 0.92843 0.88087 1.19591 1.24291 0.96017 1.09298 0.90509 1.25910 0.93095 1.00151 0.95307 1.69770 1.25279 1.36856 1.10542 0.86296 0.79371 0.82202 0.78408 1.18894 1.20319 1.19045 1.21033 0.98662 0.94365 1.10289 1.20390 0.95047 0.94921 0.99181 0.93076 0.92146 0.92679 0.91018 0.89569 0.90301 0.90322 0.90931 0.89762 0.90418 0.91577 0.91591 0.74421 0.92734 0.91256 0.89123 0.86210 0.90773 0.88930 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.16 -1.61 4.72 -26.73 -0.13 -1.74 16 3 C -0.10 -0.93 4.61 -26.73 -0.12 -1.05 16 4 C -0.59 -5.91 2.34 -26.73 -0.06 -5.97 16 5 H 0.14 1.16 8.12 -51.93 -0.42 0.74 16 6 C -0.11 -0.94 5.39 -26.73 -0.14 -1.09 16 7 C -0.19 -1.76 9.39 37.15 0.35 -1.41 16 8 S 2.61 36.42 4.59 -107.50 -0.49 35.93 16 9 O -0.96 -15.95 15.12 -57.54 -0.87 -16.82 16 10 O -0.97 -16.01 17.60 -57.54 -1.01 -17.02 16 11 N -1.11 -16.09 3.35 -11.66 -0.04 -16.13 16 12 C 0.18 2.71 5.91 -5.20 -0.03 2.68 16 13 C -0.23 -4.41 5.30 -104.33 -0.55 -4.96 16 14 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 15 C -0.16 -3.97 8.65 -38.87 -0.34 -4.31 16 16 C 0.12 2.95 5.54 -106.83 -0.59 2.36 16 17 C -0.46 -11.86 9.06 -37.74 -0.34 -12.20 16 18 H 0.08 1.89 7.86 -52.49 -0.41 1.47 16 19 C 0.07 1.78 5.28 -17.34 -0.09 1.69 16 20 N -0.80 -20.33 10.85 55.55 0.60 -19.72 16 21 Si 0.91 18.37 29.57 -169.99 -5.03 13.35 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.22 -5.12 9.80 -38.87 -0.38 -5.50 16 26 C -0.08 -1.52 9.67 -39.66 -0.38 -1.90 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.71 6.95 -51.93 -0.36 0.35 16 31 H 0.09 1.00 4.96 -51.93 -0.26 0.74 16 32 H 0.08 0.77 7.78 -51.93 -0.40 0.37 16 33 H 0.08 0.62 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 36 H 0.08 0.89 5.88 -51.93 -0.31 0.59 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.59 8.12 -51.92 -0.42 0.17 16 39 H 0.42 6.26 7.95 -34.47 -0.27 5.98 16 40 H 0.05 0.68 6.59 -51.93 -0.34 0.34 16 41 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 43 H 0.12 3.14 6.27 -52.49 -0.33 2.81 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 46 H 0.09 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -29.51 375.24 -11.30 -40.82 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.29 Total: 10.67 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: -2.83 Total: -36.72 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.56 Total: -35.86 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.88 Total: -33.85 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 36.42 SS G_CDS: -0.49 Total: 35.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.51 -11.30 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583750539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.605 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds