Wall clock time and date at job start Tue Mar 31 2020 15:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47348 * 2 1 4 4 C 1.52997 * 109.46994 * 185.80634 * 3 2 1 5 5 H 1.08998 * 109.47028 * 53.64624 * 4 3 2 6 6 C 1.53003 * 109.47138 * 173.64288 * 4 3 2 7 7 C 1.52994 * 109.47119 * 186.24405 * 6 4 3 8 8 S 1.81397 * 109.47130 * 293.64414 * 4 3 2 9 9 O 1.42099 * 110.54423 * 177.31217 * 8 4 3 10 10 O 1.42099 * 110.54315 * 314.06512 * 8 4 3 11 11 N 1.65609 * 104.44967 * 65.69068 * 8 4 3 12 12 C 1.46493 * 119.99756 * 63.18354 * 11 8 4 13 13 C 1.50703 * 109.46921 * 164.32304 * 12 11 8 14 14 C 1.38627 * 119.75272 * 269.73103 * 13 12 11 15 15 C 1.37619 * 120.24757 * 179.71855 * 14 13 12 16 16 C 1.40712 * 119.74539 * 0.57255 * 15 14 13 17 17 C 1.41398 * 120.24386 * 179.67800 * 16 15 14 18 18 H 1.08001 * 119.99877 * 210.34965 * 17 16 15 19 19 C 1.39944 * 120.00017 * 30.36091 * 17 16 15 20 20 N 1.30827 * 120.00109 * 8.80666 * 19 17 16 21 21 Si 1.86798 * 119.99818 * 188.81462 * 19 17 16 22 22 H 1.48495 * 109.47319 * 59.99892 * 21 19 17 23 23 H 1.48510 * 109.47116 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47297 * 299.99381 * 21 19 17 25 25 C 1.40710 * 119.51332 * 359.70239 * 16 15 14 26 26 C 1.37622 * 119.74426 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47037 * 60.00014 * 1 2 3 28 28 H 1.08991 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46769 * 300.00520 * 1 2 3 30 30 H 1.08994 * 109.46731 * 239.99695 * 2 1 3 31 31 H 1.09003 * 109.46577 * 120.00180 * 2 1 3 32 32 H 1.08998 * 109.47251 * 65.80075 * 3 2 1 33 33 H 1.09001 * 109.46854 * 305.80342 * 3 2 1 34 34 H 1.09007 * 109.46826 * 66.24936 * 6 4 3 35 35 H 1.08995 * 109.47318 * 306.25083 * 6 4 3 36 36 H 1.08997 * 109.47440 * 292.67933 * 7 6 4 37 37 H 1.09006 * 109.46963 * 172.67462 * 7 6 4 38 38 H 1.09011 * 109.47067 * 52.68277 * 7 6 4 39 39 H 0.96993 * 119.99326 * 243.19114 * 11 8 4 40 40 H 1.09001 * 109.47497 * 284.32661 * 12 11 8 41 41 H 1.09003 * 109.47235 * 44.33108 * 12 11 8 42 42 H 1.07999 * 119.87755 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.12635 * 180.27439 * 15 14 13 44 44 H 0.96998 * 119.99984 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.13350 * 179.97438 * 25 16 15 46 46 H 1.08001 * 119.87890 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5631 1.4449 -0.1459 5 1 3.8448 0.8645 -1.0245 6 6 4.0580 2.8839 -0.3051 7 6 5.5580 2.8770 -0.6062 8 16 4.3133 0.7074 1.3319 9 8 5.7260 0.6417 1.1940 10 8 3.7158 1.2326 2.5093 11 7 3.8255 -0.8748 1.2972 12 6 4.2420 -1.7456 0.1953 13 6 4.0081 -3.1848 0.5765 14 6 5.0123 -3.9006 1.2098 15 6 4.8076 -5.2136 1.5676 16 6 3.5778 -5.8328 1.2774 17 6 3.3587 -7.1833 1.6342 18 1 2.6998 -7.7988 1.0396 19 6 3.9953 -7.7224 2.7578 20 7 4.6532 -6.9406 3.5748 21 14 3.9060 -9.5583 3.0909 22 1 4.5038 -10.2980 1.9505 23 1 4.6570 -9.8732 4.3328 24 1 2.4866 -9.9632 3.2541 25 6 2.5678 -5.0982 0.6291 26 6 2.7925 -3.7846 0.2856 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7641 1.9255 0.9373 33 1 1.5944 1.9854 -0.8335 34 1 3.8751 3.4351 0.6173 35 1 3.5247 3.3627 -1.1263 36 1 6.1023 2.5180 0.2672 37 1 5.8847 3.8885 -0.8477 38 1 5.7556 2.2195 -1.4530 39 1 3.2640 -1.2248 2.0065 40 1 3.6616 -1.5068 -0.6959 41 1 5.3016 -1.5916 -0.0091 42 1 5.9572 -3.4249 1.4269 43 1 5.5897 -5.7682 2.0649 44 1 5.0942 -7.3142 4.3538 45 1 1.6203 -5.5636 0.4012 46 1 2.0190 -3.2189 -0.2125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583750539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:17 Heat of formation + Delta-G solvation = -96.496054 kcal Electronic energy + Delta-G solvation = -26145.471100 eV Core-core repulsion = 22546.207765 eV Total energy + Delta-G solvation = -3599.263335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.62312 -38.25749 -37.86597 -37.00714 -36.56600 -35.13726 -34.11165 -31.72777 -31.11429 -29.92179 -28.17320 -25.32994 -25.13117 -23.04506 -22.85157 -21.99902 -21.79996 -20.11960 -19.18804 -18.93751 -17.90551 -17.42442 -17.11516 -16.08097 -15.72356 -15.60369 -15.53080 -15.28020 -15.20520 -15.01012 -14.58413 -14.30130 -13.97146 -13.78478 -13.69733 -13.54376 -13.35298 -13.28982 -13.20498 -13.06464 -12.93497 -12.78509 -12.71913 -12.33572 -12.26921 -12.20861 -12.10716 -11.88232 -11.62379 -11.54098 -11.39873 -11.25673 -11.13821 -11.06642 -10.02334 -9.34162 -9.16330 -8.57368 -6.36752 -0.68926 0.90983 1.17717 1.37905 1.48021 1.49530 1.90664 2.21397 2.77170 2.84578 3.16904 3.46738 3.67699 3.76266 4.01051 4.04953 4.21529 4.27067 4.34453 4.38047 4.49532 4.55512 4.63039 4.69741 4.74311 4.79698 4.83079 4.97655 5.03473 5.04089 5.08322 5.09019 5.14042 5.18071 5.34989 5.38989 5.39534 5.40506 5.46738 5.53612 5.73928 5.95149 6.10875 6.13405 6.24605 6.41616 6.73238 6.96138 7.04932 8.38099 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.003060 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.406382 B = 9149.214802 C = 9828.903535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.163 4.163 3 C -0.099 4.099 4 C -0.560 4.560 5 H 0.162 0.838 6 C -0.110 4.110 7 C -0.192 4.192 8 S 2.600 3.400 9 O -0.993 6.993 10 O -0.999 6.999 11 N -1.110 6.110 12 C 0.180 3.820 13 C -0.206 4.206 14 C -0.097 4.097 15 C -0.185 4.185 16 C 0.082 3.918 17 C -0.502 4.502 18 H 0.076 0.924 19 C 0.030 3.970 20 N -0.837 5.837 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.260 1.260 25 C -0.236 4.236 26 C -0.069 4.069 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.284 0.716 45 H 0.100 0.900 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 16.638 -9.951 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.201 4.201 3 C -0.137 4.137 4 C -0.674 4.674 5 H 0.180 0.820 6 C -0.149 4.149 7 C -0.250 4.250 8 S 2.697 3.303 9 O -0.983 6.983 10 O -0.989 6.989 11 N -0.870 5.870 12 C 0.056 3.944 13 C -0.209 4.209 14 C -0.116 4.116 15 C -0.205 4.205 16 C 0.079 3.921 17 C -0.532 4.532 18 H 0.094 0.906 19 C -0.184 4.184 20 N -0.464 5.464 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.255 4.255 26 C -0.088 4.088 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.252 0.748 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.118 0.882 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.885 17.104 -9.192 19.802 hybrid contribution -0.250 -1.415 0.566 1.545 sum -4.135 15.688 -8.626 18.375 Atomic orbital electron populations 1.21728 0.94910 1.01985 1.02161 1.22210 0.97467 0.96242 1.04204 1.21466 0.88666 0.98614 1.04936 1.30293 1.08135 1.09076 1.19931 0.81986 1.21468 0.97011 0.91340 1.05093 1.22293 0.95214 1.04238 1.03210 1.05263 0.74243 0.73560 0.77204 1.93523 1.31204 1.85811 1.87806 1.93519 1.79176 1.79398 1.46838 1.55726 1.68123 1.27547 1.35621 1.20048 0.99839 0.86298 0.88250 1.19308 0.95801 0.95575 1.10189 1.20860 0.98250 0.94263 0.98214 1.21295 0.97811 0.95637 1.05709 1.18002 0.90952 0.93592 0.89520 1.19843 1.25965 0.96852 1.10531 0.90608 1.26743 0.92361 1.04608 0.94638 1.69860 1.26607 1.38725 1.11211 0.85234 0.79548 0.76431 0.78365 1.18437 1.19624 1.18387 1.21275 0.98422 0.95701 1.10145 1.20764 0.95991 0.93911 0.98119 0.91459 0.92824 0.92993 0.89873 0.91218 0.90916 0.87333 0.90956 0.86440 0.93089 0.89769 0.90837 0.74788 0.88578 0.91169 0.88477 0.88699 0.90520 0.88231 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.16 -2.72 4.72 30.60 0.14 -2.58 16 3 C -0.10 -1.42 4.61 30.59 0.14 -1.28 16 4 C -0.56 -8.93 2.34 30.59 0.07 -8.86 16 5 H 0.16 1.85 8.12 -2.39 -0.02 1.83 16 6 C -0.11 -1.52 5.39 30.59 0.16 -1.35 16 7 C -0.19 -3.10 9.39 71.98 0.68 -2.42 16 8 S 2.60 69.07 4.59 -56.49 -0.26 68.81 16 9 O -0.99 -32.64 15.12 -127.65 -1.93 -34.57 16 10 O -1.00 -32.84 17.60 -127.65 -2.25 -35.09 16 11 N -1.11 -30.43 3.35 -190.79 -0.64 -31.07 16 12 C 0.18 4.99 5.91 85.64 0.51 5.50 16 13 C -0.21 -7.73 5.30 -19.67 -0.10 -7.83 16 14 C -0.10 -4.36 9.67 22.22 0.21 -4.14 16 15 C -0.18 -9.68 8.65 22.73 0.20 -9.48 16 16 C 0.08 4.31 5.54 -21.29 -0.12 4.20 16 17 C -0.50 -26.91 9.06 23.46 0.21 -26.69 16 18 H 0.08 3.89 7.86 -2.91 -0.02 3.86 16 19 C 0.03 1.51 5.28 85.26 0.45 1.96 16 20 N -0.84 -44.85 10.85 21.83 0.24 -44.61 16 21 Si 0.98 38.80 29.57 68.60 2.03 40.83 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 C -0.24 -10.79 9.80 22.73 0.22 -10.56 16 26 C -0.07 -2.61 9.67 22.22 0.21 -2.40 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.18 6.95 -2.39 -0.02 1.17 16 31 H 0.07 1.42 4.96 -2.39 -0.01 1.40 16 32 H 0.07 1.19 7.78 -2.39 -0.02 1.17 16 33 H 0.11 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.12 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.05 1.11 5.88 -2.39 -0.01 1.10 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 39 H 0.42 12.07 7.95 -96.75 -0.77 11.31 16 40 H 0.10 1.91 6.59 -2.39 -0.02 1.89 16 41 H 0.07 1.98 7.67 -2.39 -0.02 1.96 16 42 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.09 5.34 6.27 -2.91 -0.02 5.32 16 44 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 45 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -68.40 375.24 1.10 -67.30 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.20 Total: 36.00 kcal Atomic # 6 Polarization: -71.31 SS G_CDS: 3.71 Total: -67.61 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -0.40 Total: -75.68 kcal Atomic # 8 Polarization: -65.48 SS G_CDS: -4.18 Total: -69.66 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 16 Polarization: 69.07 SS G_CDS: -0.26 Total: 68.81 kcal Total: -68.40 1.10 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583750539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.196 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds