Wall clock time and date at job start Tue Mar 31 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47227 * 175.00038 * 3 2 1 5 5 C 1.52992 * 109.47237 * 182.52507 * 4 3 2 6 6 N 1.46498 * 109.47179 * 295.00136 * 3 2 1 7 7 C 1.46500 * 119.99947 * 298.17940 * 6 3 2 8 8 C 1.52995 * 109.47219 * 272.09166 * 7 6 3 9 9 S 1.65600 * 119.99888 * 118.18161 * 6 3 2 10 10 O 1.42092 * 106.40428 * 336.45755 * 9 6 3 11 11 O 1.42106 * 106.40346 * 203.53701 * 9 6 3 12 12 C 1.76204 * 107.21758 * 90.00044 * 9 6 3 13 13 C 1.38652 * 119.87476 * 270.24795 * 12 9 6 14 14 C 1.38621 * 120.50142 * 180.30122 * 13 12 9 15 15 C 1.37636 * 120.24579 * 359.44878 * 14 13 12 16 16 C 1.40699 * 119.74479 * 0.27068 * 15 14 13 17 17 C 1.41400 * 120.24477 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00251 * 208.49574 * 17 16 15 19 19 C 1.39949 * 119.99539 * 28.50000 * 17 16 15 20 20 N 1.30827 * 119.99990 * 14.51158 * 19 17 16 21 21 Si 1.86800 * 119.99832 * 194.50872 * 19 17 16 22 22 H 1.48496 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47046 * 120.00295 * 21 19 17 24 24 H 1.48497 * 109.47067 * 240.00407 * 21 19 17 25 25 C 1.37594 * 119.87660 * 90.00049 * 12 9 6 26 26 H 1.08999 * 109.47139 * 59.99811 * 1 2 3 27 27 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47127 * 300.00152 * 1 2 3 29 29 H 1.08996 * 109.46803 * 240.00011 * 2 1 3 30 30 H 1.08996 * 109.46733 * 119.99873 * 2 1 3 31 31 H 1.09005 * 109.47029 * 55.00114 * 3 2 1 32 32 H 1.09008 * 109.46893 * 302.52225 * 4 3 2 33 33 H 1.08994 * 109.47165 * 62.52105 * 4 3 2 34 34 H 1.09000 * 109.47519 * 60.00134 * 5 4 3 35 35 H 1.09004 * 109.47209 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47337 * 299.99715 * 5 4 3 37 37 H 1.08995 * 109.46871 * 32.09296 * 7 6 3 38 38 H 1.09000 * 109.46908 * 152.08820 * 7 6 3 39 39 H 1.09000 * 109.46930 * 187.81618 * 8 7 6 40 40 H 1.09001 * 109.47405 * 307.81606 * 8 7 6 41 41 H 1.09003 * 109.47126 * 67.81471 * 8 7 6 42 42 H 1.07997 * 119.75146 * 0.04571 * 13 12 9 43 43 H 1.07996 * 119.87343 * 179.72127 * 14 13 12 44 44 H 1.08000 * 120.12866 * 180.25352 * 15 14 13 45 45 H 0.97003 * 119.99594 * 179.97438 * 20 19 17 46 46 H 1.08005 * 120.12925 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0696 2.8872 0.1891 6 7 1.6525 2.0975 -1.2518 7 6 2.1464 1.5827 -2.5313 8 6 3.4944 2.2298 -2.8552 9 16 0.6561 3.4198 -1.2203 10 8 -0.0720 3.3448 -0.0024 11 8 0.0327 3.4830 -2.4958 12 6 1.6847 4.8452 -1.0982 13 6 2.0418 5.3344 0.1490 14 6 2.8453 6.4585 0.2603 15 6 3.3071 7.0951 -0.8692 16 6 2.9559 6.6041 -2.1402 17 6 3.4240 7.2502 -3.3076 18 1 2.8447 7.2068 -4.2180 19 6 4.6381 7.9458 -3.2832 20 7 5.4728 7.7703 -2.2912 21 14 5.0669 9.1249 -4.6672 22 1 3.9638 9.1434 -5.6612 23 1 5.2581 10.4894 -4.1136 24 1 6.3199 8.6785 -5.3274 25 6 2.1348 5.4656 -2.2409 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6054 1.9815 0.8419 32 1 3.8551 0.9177 1.0349 33 1 4.0013 0.9444 -0.7389 34 1 3.6332 3.3872 1.0537 35 1 5.1560 2.8885 0.2782 36 1 3.7794 3.4139 -0.7200 37 1 2.2689 0.5017 -2.4651 38 1 1.4310 1.8197 -3.3188 39 1 3.7957 1.9552 -3.8661 40 1 3.4035 3.3137 -2.7850 41 1 4.2446 1.8814 -2.1453 42 1 1.6879 4.8384 1.0407 43 1 3.1135 6.8335 1.2369 44 1 3.9364 7.9683 -0.7804 45 1 6.3145 8.2522 -2.2746 46 1 1.8591 5.0803 -3.2115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588904461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:13 Heat of formation + Delta-G solvation = -72.353932 kcal Electronic energy + Delta-G solvation = -27740.901023 eV Core-core repulsion = 24142.684569 eV Total energy + Delta-G solvation = -3598.216454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.41305 -37.64372 -36.72897 -35.27318 -33.82458 -33.17416 -31.95493 -30.07329 -29.82210 -29.58414 -25.94188 -25.44796 -22.99174 -21.85406 -21.79501 -21.01399 -20.24256 -18.58423 -18.07246 -17.25856 -16.04148 -15.72693 -15.30259 -14.83434 -14.61820 -14.44246 -14.10382 -13.89426 -13.44039 -13.35572 -13.21869 -12.90681 -12.59515 -12.52117 -12.34679 -11.99960 -11.80059 -11.70812 -11.56860 -11.44120 -11.40077 -11.34937 -11.28590 -10.98313 -10.87460 -10.85561 -10.80369 -10.67234 -10.56052 -10.32153 -10.25201 -9.72728 -9.57281 -9.36624 -8.70527 -7.99472 -7.63931 -6.89075 -4.53169 1.02906 2.20435 2.63293 3.01335 3.04639 3.07234 3.49390 3.84841 4.29657 4.44362 4.70800 4.84849 5.09450 5.12578 5.21620 5.39011 5.39886 5.52185 5.57684 5.58957 5.62345 5.77633 5.80096 5.94760 5.99462 6.04304 6.07525 6.12996 6.15909 6.18158 6.29790 6.34877 6.45565 6.57403 6.63694 6.65216 6.75168 6.81108 6.87567 7.01784 7.08201 7.22881 7.38702 7.71961 7.82820 7.94711 8.41628 8.68785 8.73443 10.07185 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004395 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.317803 B = 6369.326271 C = 6434.040272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.150 3.850 4 C -0.133 4.133 5 C -0.164 4.164 6 N -0.989 5.989 7 C 0.116 3.884 8 C -0.190 4.190 9 S 2.681 3.319 10 O -0.973 6.973 11 O -0.973 6.973 12 C -0.632 4.632 13 C -0.135 4.135 14 C -0.122 4.122 15 C -0.110 4.110 16 C 0.094 3.906 17 C -0.464 4.464 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.800 5.800 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.121 4.121 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.121 0.879 45 H 0.281 0.719 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -11.533 3.032 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.044 3.956 4 C -0.172 4.172 5 C -0.221 4.221 6 N -0.826 5.826 7 C -0.009 4.009 8 C -0.248 4.248 9 S 2.779 3.221 10 O -0.964 6.964 11 O -0.964 6.964 12 C -0.724 4.724 13 C -0.157 4.157 14 C -0.142 4.142 15 C -0.130 4.130 16 C 0.091 3.909 17 C -0.494 4.494 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.139 0.861 45 H 0.092 0.908 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.456 -11.529 3.050 12.014 hybrid contribution 1.184 1.033 -0.510 1.652 sum -0.272 -10.496 2.540 10.802 Atomic orbital electron populations 1.21777 0.95669 1.01157 1.02529 1.21846 0.96401 0.96333 1.02225 1.20981 0.95138 0.93656 0.85860 1.22000 0.94819 0.98540 1.01846 1.22045 1.00458 0.95693 1.03941 1.57579 1.67744 1.45745 1.11486 1.21248 0.96297 0.99163 0.84231 1.22614 0.97523 1.03226 1.01469 1.01925 0.73969 0.73287 0.72967 1.93494 1.69464 1.86849 1.46571 1.93505 1.73815 1.86845 1.42194 1.29810 1.21277 1.21027 1.00281 1.20025 1.02243 0.99619 0.93763 1.20786 0.99111 0.96768 0.97527 1.21582 1.00049 0.99629 0.91756 1.17657 0.90108 0.89800 0.93357 1.19613 1.04153 1.28060 0.97526 0.90041 1.25877 0.95624 0.95673 0.96978 1.69771 1.07787 1.34579 1.30404 0.86232 0.79177 0.80049 0.81169 1.18304 1.19706 1.19932 1.20769 1.01950 0.96738 0.94728 0.93122 0.92932 0.91974 0.91491 0.91113 0.88426 0.91706 0.91158 0.92644 0.93227 0.90319 0.90454 0.89454 0.92122 0.90734 0.91478 0.87852 0.88543 0.86097 0.90791 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.80 37.16 0.36 -1.43 16 2 C -0.13 -1.37 5.38 -26.73 -0.14 -1.51 16 3 C 0.15 1.94 2.03 -67.93 -0.14 1.80 16 4 C -0.13 -1.59 4.87 -26.74 -0.13 -1.72 16 5 C -0.16 -2.44 8.31 37.15 0.31 -2.13 16 6 N -0.99 -14.81 1.55 -107.31 -0.17 -14.98 16 7 C 0.12 1.54 5.79 -4.04 -0.02 1.51 16 8 C -0.19 -2.65 8.56 37.15 0.32 -2.34 16 9 S 2.68 51.27 5.68 -107.50 -0.61 50.66 16 10 O -0.97 -19.71 15.86 -57.17 -0.91 -20.62 16 11 O -0.97 -20.73 15.85 -57.17 -0.91 -21.64 16 12 C -0.63 -13.46 4.59 -39.66 -0.18 -13.64 16 13 C -0.14 -2.83 7.71 -39.29 -0.30 -3.14 16 14 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 15 C -0.11 -2.67 8.66 -38.87 -0.34 -3.01 16 16 C 0.09 2.36 5.54 -106.82 -0.59 1.77 16 17 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 18 H 0.08 2.00 7.89 -52.49 -0.41 1.59 16 19 C 0.08 1.80 5.18 -17.34 -0.09 1.72 16 20 N -0.80 -19.49 11.04 55.55 0.61 -18.88 16 21 Si 0.91 18.02 29.58 -169.99 -5.03 12.99 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.12 -2.80 7.80 -38.87 -0.30 -3.11 16 26 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.37 6.94 -51.93 -0.36 1.01 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.78 5.73 -51.93 -0.30 0.48 16 34 H 0.05 0.84 7.37 -51.93 -0.38 0.46 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.35 3.95 -51.93 -0.21 1.14 16 37 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 38 H 0.09 1.22 6.97 -51.93 -0.36 0.86 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.28 5.99 -51.93 -0.31 0.97 16 41 H 0.07 0.87 4.83 -51.93 -0.25 0.62 16 42 H 0.10 1.98 7.61 -52.49 -0.40 1.58 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 3.01 6.34 -52.49 -0.33 2.68 16 45 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 46 H 0.11 2.49 7.60 -52.48 -0.40 2.09 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -28.14 361.34 -10.44 -38.57 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.89 Total: 8.77 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: -1.99 Total: -40.32 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.45 Total: -33.86 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.81 Total: -42.25 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 51.27 SS G_CDS: -0.61 Total: 50.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.14 -10.44 -38.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588904461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.780 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds