Wall clock time and date at job start Tue Mar 31 2020 14:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47227 * 175.00038 * 3 2 1 5 5 C 1.52992 * 109.47237 * 182.52507 * 4 3 2 6 6 N 1.46498 * 109.47179 * 295.00136 * 3 2 1 7 7 C 1.46500 * 119.99947 * 298.17940 * 6 3 2 8 8 C 1.52995 * 109.47219 * 272.09166 * 7 6 3 9 9 S 1.65600 * 119.99888 * 118.18161 * 6 3 2 10 10 O 1.42092 * 106.40428 * 336.45755 * 9 6 3 11 11 O 1.42106 * 106.40346 * 203.53701 * 9 6 3 12 12 C 1.76204 * 107.21758 * 90.00044 * 9 6 3 13 13 C 1.38652 * 119.87476 * 270.24795 * 12 9 6 14 14 C 1.38621 * 120.50142 * 180.30122 * 13 12 9 15 15 C 1.37636 * 120.24579 * 359.44878 * 14 13 12 16 16 C 1.40699 * 119.74479 * 0.27068 * 15 14 13 17 17 C 1.41400 * 120.24477 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00251 * 208.49574 * 17 16 15 19 19 C 1.39949 * 119.99539 * 28.50000 * 17 16 15 20 20 N 1.30827 * 119.99990 * 14.51158 * 19 17 16 21 21 Si 1.86800 * 119.99832 * 194.50872 * 19 17 16 22 22 H 1.48496 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47046 * 120.00295 * 21 19 17 24 24 H 1.48497 * 109.47067 * 240.00407 * 21 19 17 25 25 C 1.37594 * 119.87660 * 90.00049 * 12 9 6 26 26 H 1.08999 * 109.47139 * 59.99811 * 1 2 3 27 27 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47127 * 300.00152 * 1 2 3 29 29 H 1.08996 * 109.46803 * 240.00011 * 2 1 3 30 30 H 1.08996 * 109.46733 * 119.99873 * 2 1 3 31 31 H 1.09005 * 109.47029 * 55.00114 * 3 2 1 32 32 H 1.09008 * 109.46893 * 302.52225 * 4 3 2 33 33 H 1.08994 * 109.47165 * 62.52105 * 4 3 2 34 34 H 1.09000 * 109.47519 * 60.00134 * 5 4 3 35 35 H 1.09004 * 109.47209 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47337 * 299.99715 * 5 4 3 37 37 H 1.08995 * 109.46871 * 32.09296 * 7 6 3 38 38 H 1.09000 * 109.46908 * 152.08820 * 7 6 3 39 39 H 1.09000 * 109.46930 * 187.81618 * 8 7 6 40 40 H 1.09001 * 109.47405 * 307.81606 * 8 7 6 41 41 H 1.09003 * 109.47126 * 67.81471 * 8 7 6 42 42 H 1.07997 * 119.75146 * 0.04571 * 13 12 9 43 43 H 1.07996 * 119.87343 * 179.72127 * 14 13 12 44 44 H 1.08000 * 120.12866 * 180.25352 * 15 14 13 45 45 H 0.97003 * 119.99594 * 179.97438 * 20 19 17 46 46 H 1.08005 * 120.12925 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0696 2.8872 0.1891 6 7 1.6525 2.0975 -1.2518 7 6 2.1464 1.5827 -2.5313 8 6 3.4944 2.2298 -2.8552 9 16 0.6561 3.4198 -1.2203 10 8 -0.0720 3.3448 -0.0024 11 8 0.0327 3.4830 -2.4958 12 6 1.6847 4.8452 -1.0982 13 6 2.0418 5.3344 0.1490 14 6 2.8453 6.4585 0.2603 15 6 3.3071 7.0951 -0.8692 16 6 2.9559 6.6041 -2.1402 17 6 3.4240 7.2502 -3.3076 18 1 2.8447 7.2068 -4.2180 19 6 4.6381 7.9458 -3.2832 20 7 5.4728 7.7703 -2.2912 21 14 5.0669 9.1249 -4.6672 22 1 3.9638 9.1434 -5.6612 23 1 5.2581 10.4894 -4.1136 24 1 6.3199 8.6785 -5.3274 25 6 2.1348 5.4656 -2.2409 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6054 1.9815 0.8419 32 1 3.8551 0.9177 1.0349 33 1 4.0013 0.9444 -0.7389 34 1 3.6332 3.3872 1.0537 35 1 5.1560 2.8885 0.2782 36 1 3.7794 3.4139 -0.7200 37 1 2.2689 0.5017 -2.4651 38 1 1.4310 1.8197 -3.3188 39 1 3.7957 1.9552 -3.8661 40 1 3.4035 3.3137 -2.7850 41 1 4.2446 1.8814 -2.1453 42 1 1.6879 4.8384 1.0407 43 1 3.1135 6.8335 1.2369 44 1 3.9364 7.9683 -0.7804 45 1 6.3145 8.2522 -2.2746 46 1 1.8591 5.0803 -3.2115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588904461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:12 Heat of formation + Delta-G solvation = -87.365558 kcal Electronic energy + Delta-G solvation = -27741.551976 eV Core-core repulsion = 24142.684569 eV Total energy + Delta-G solvation = -3598.867407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61422 -39.31481 -38.33394 -36.89796 -35.63072 -34.22080 -32.99697 -31.87738 -31.55542 -30.76003 -27.33737 -26.96121 -24.13624 -23.57176 -22.84197 -22.70101 -21.43593 -20.05201 -19.54665 -18.75508 -17.76739 -17.11745 -16.92789 -16.52520 -16.04996 -15.60572 -15.34259 -15.16327 -15.01780 -14.88212 -14.41046 -14.23334 -13.91115 -13.71957 -13.64878 -13.38932 -13.29865 -13.17884 -13.09197 -13.05682 -13.01781 -12.81924 -12.67244 -12.50431 -12.35644 -12.22841 -11.90090 -11.79182 -11.71102 -11.51958 -11.39053 -11.31628 -11.24022 -11.14045 -9.96587 -9.71817 -9.46846 -8.68715 -6.43352 -0.49049 0.43791 0.86783 1.37255 1.43605 1.51105 2.07853 2.18608 2.60438 2.78648 3.38674 3.52597 3.68534 4.11206 4.14181 4.20131 4.30835 4.42014 4.45079 4.46802 4.48620 4.58150 4.66069 4.72558 4.80200 4.84839 4.88441 4.91998 5.05693 5.09002 5.13006 5.16265 5.20412 5.22787 5.24717 5.35822 5.43122 5.43425 5.47899 5.57150 5.59001 5.70544 5.88544 5.90325 5.96699 6.12690 6.55109 6.83210 6.87754 8.29707 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004395 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.317803 B = 6369.326271 C = 6434.040272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C 0.141 3.859 4 C -0.124 4.124 5 C -0.168 4.168 6 N -0.978 5.978 7 C 0.113 3.887 8 C -0.188 4.188 9 S 2.698 3.302 10 O -0.984 6.984 11 O -0.998 6.998 12 C -0.636 4.636 13 C -0.130 4.130 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.068 3.932 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.041 3.959 20 N -0.826 5.826 21 Si 0.978 3.022 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.131 4.131 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.289 0.711 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -13.838 3.640 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.161 4.161 3 C 0.036 3.964 4 C -0.163 4.163 5 C -0.225 4.225 6 N -0.817 5.817 7 C -0.011 4.011 8 C -0.246 4.246 9 S 2.793 3.207 10 O -0.974 6.974 11 O -0.988 6.988 12 C -0.725 4.725 13 C -0.150 4.150 14 C -0.142 4.142 15 C -0.150 4.150 16 C 0.065 3.935 17 C -0.531 4.531 18 H 0.092 0.908 19 C -0.174 4.174 20 N -0.452 5.452 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.189 1.189 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.804 -13.808 3.676 14.312 hybrid contribution 0.953 1.615 -0.602 1.969 sum 0.148 -12.193 3.074 12.576 Atomic orbital electron populations 1.21830 0.96713 1.02144 1.00957 1.21850 0.95390 0.94445 1.04412 1.21287 0.95968 0.94985 0.84200 1.21966 0.93733 0.96686 1.03886 1.22046 1.00655 0.97634 1.02168 1.57340 1.67331 1.43773 1.13216 1.21455 0.95388 1.01266 0.83014 1.22592 0.98398 1.00791 1.02865 1.01384 0.73934 0.73313 0.72107 1.93473 1.70028 1.87056 1.46861 1.93467 1.74740 1.87298 1.43320 1.30241 1.20496 1.22000 0.99716 1.20305 1.01278 0.99041 0.94409 1.21066 0.98512 0.96636 0.97983 1.21540 1.01073 1.00026 0.92401 1.17955 0.90981 0.90631 0.93927 1.19800 1.05397 1.30290 0.97570 0.90814 1.26613 0.94893 0.96546 0.99369 1.69808 1.08257 1.35251 1.31895 0.85210 0.78881 0.77936 0.78061 1.18554 1.18860 1.18934 1.20739 1.02485 0.96745 0.95283 0.95088 0.90707 0.93221 0.89692 0.88444 0.89640 0.88915 0.89749 0.93470 0.93063 0.92984 0.86334 0.90447 0.90597 0.94513 0.90338 0.85771 0.85932 0.87419 0.90014 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.80 71.98 0.71 -2.58 16 2 C -0.12 -2.08 5.38 30.60 0.16 -1.92 16 3 C 0.14 3.26 2.03 44.99 0.09 3.36 16 4 C -0.12 -2.56 4.87 30.59 0.15 -2.41 16 5 C -0.17 -4.78 8.31 71.98 0.60 -4.18 16 6 N -0.98 -27.89 1.55 -493.42 -0.77 -28.65 16 7 C 0.11 2.79 5.79 86.38 0.50 3.29 16 8 C -0.19 -5.08 8.56 71.98 0.62 -4.46 16 9 S 2.70 103.23 5.68 -56.49 -0.32 102.91 16 10 O -0.98 -39.36 15.86 -128.00 -2.03 -41.39 16 11 O -1.00 -43.22 15.85 -128.00 -2.03 -45.25 16 12 C -0.64 -27.62 4.59 22.22 0.10 -27.52 16 13 C -0.13 -5.44 7.71 22.46 0.17 -5.27 16 14 C -0.12 -5.40 10.02 22.22 0.22 -5.18 16 15 C -0.13 -6.57 8.66 22.73 0.20 -6.37 16 16 C 0.07 3.59 5.54 -21.29 -0.12 3.47 16 17 C -0.50 -26.55 9.05 23.46 0.21 -26.33 16 18 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 19 C 0.04 1.99 5.18 85.26 0.44 2.43 16 20 N -0.83 -41.38 11.04 21.83 0.24 -41.14 16 21 Si 0.98 37.57 29.58 68.60 2.03 39.60 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.13 -6.41 7.80 22.73 0.18 -6.24 16 26 H 0.03 0.75 7.75 -2.39 -0.02 0.73 16 27 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.18 6.55 -2.39 -0.02 1.17 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 2.23 6.94 -2.38 -0.02 2.21 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.08 1.53 5.73 -2.39 -0.01 1.52 16 34 H 0.05 1.38 7.37 -2.39 -0.02 1.36 16 35 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.05 1.77 3.95 -2.39 -0.01 1.77 16 37 H 0.12 2.00 6.44 -2.39 -0.02 1.99 16 38 H 0.08 2.10 6.97 -2.39 -0.02 2.08 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.28 5.99 -2.39 -0.01 1.27 16 41 H 0.08 1.90 4.83 -2.39 -0.01 1.89 16 42 H 0.12 4.65 7.61 -2.91 -0.02 4.63 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.11 5.61 6.34 -2.91 -0.02 5.60 16 45 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 46 H 0.10 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -63.51 361.34 2.34 -61.17 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.98 Total: 32.66 kcal Atomic # 6 Polarization: -84.14 SS G_CDS: 4.23 Total: -79.91 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.52 Total: -69.79 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -4.06 Total: -86.64 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 16 Polarization: 103.23 SS G_CDS: -0.32 Total: 102.91 kcal Total: -63.51 2.34 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588904461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.192 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds