Wall clock time and date at job start Tue Mar 31 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99965 * 2 1 4 4 C 1.53000 * 109.47543 * 275.00298 * 3 2 1 5 5 C 1.52996 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47046 * 60.00024 * 5 4 3 7 7 C 1.53000 * 109.47394 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47026 * 300.00081 * 5 4 3 9 9 S 1.65600 * 119.99688 * 180.02562 * 2 1 3 10 10 O 1.42102 * 106.40353 * 336.45007 * 9 2 1 11 11 O 1.42101 * 106.39748 * 203.53917 * 9 2 1 12 12 C 1.76193 * 107.22282 * 89.99516 * 9 2 1 13 13 C 1.38649 * 119.87686 * 270.29710 * 12 9 2 14 14 C 1.38617 * 120.50384 * 180.25774 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87246 * 89.99680 * 12 9 2 26 26 H 1.09001 * 109.47235 * 270.00069 * 1 2 3 27 27 H 1.09002 * 109.47266 * 29.99467 * 1 2 3 28 28 H 1.09002 * 109.47349 * 149.99384 * 1 2 3 29 29 H 1.09003 * 109.47334 * 35.00634 * 3 2 1 30 30 H 1.09004 * 109.47211 * 155.00206 * 3 2 1 31 31 H 1.09001 * 109.46988 * 299.99946 * 4 3 2 32 32 H 1.08996 * 109.46987 * 60.00038 * 4 3 2 33 33 H 1.09001 * 109.47422 * 60.00162 * 6 5 4 34 34 H 1.09001 * 109.47159 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47000 * 299.99822 * 6 5 4 36 36 H 1.08996 * 109.46987 * 59.99877 * 7 5 4 37 37 H 1.09003 * 109.47608 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46988 * 299.99785 * 7 5 4 39 39 H 1.08998 * 109.47423 * 59.99931 * 8 5 4 40 40 H 1.09003 * 109.46642 * 180.02562 * 8 5 4 41 41 H 1.09001 * 109.47305 * 299.99539 * 8 5 4 42 42 H 1.08005 * 119.75337 * 359.97438 * 13 12 9 43 43 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 44 44 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07994 * 120.13007 * 0.04669 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 6 3.1091 3.0980 -1.4370 6 6 4.4963 2.8853 -0.8276 7 6 3.2547 3.6030 -2.8739 8 6 2.3414 4.1307 -0.6094 9 16 2.2929 -1.4342 -0.0006 10 8 1.4113 -2.4067 0.5436 11 8 3.5759 -1.1570 0.5439 12 6 2.5536 -1.8853 -1.6838 13 6 1.6117 -2.6580 -2.3456 14 6 1.8061 -3.0249 -3.6681 15 6 2.9337 -2.6151 -4.3426 16 6 3.8936 -1.8257 -3.6829 17 6 5.0561 -1.3993 -4.3655 18 1 5.9487 -1.1527 -3.8099 19 6 5.0501 -1.2969 -5.7612 20 7 3.9142 -1.2492 -6.4086 21 14 6.6638 -1.2283 -6.6997 22 1 7.4438 -2.4638 -6.4340 23 1 6.3861 -1.1209 -8.1546 24 1 7.4442 -0.0452 -6.2565 25 6 3.6884 -1.4642 -2.3383 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6502 2.0042 0.5895 30 1 3.1858 1.1177 0.4343 31 1 2.8910 1.0378 -2.0265 32 1 1.3553 1.9244 -1.8712 33 1 5.0434 2.1496 -1.4172 34 1 5.0416 3.8292 -0.8272 35 1 4.3923 2.5259 0.1961 36 1 2.2663 3.7546 -3.3076 37 1 3.8005 4.5465 -2.8740 38 1 3.8014 2.8674 -3.4639 39 1 2.2373 3.7712 0.4144 40 1 2.8866 5.0746 -0.6098 41 1 1.3531 4.2823 -1.0435 42 1 0.7217 -2.9804 -1.8254 43 1 1.0681 -3.6308 -4.1725 44 1 3.0814 -2.8986 -5.3742 45 1 3.9101 -1.1779 -7.3761 46 1 4.4188 -0.8589 -1.8222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592072230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:30 Heat of formation + Delta-G solvation = -78.064109 kcal Electronic energy + Delta-G solvation = -27081.053455 eV Core-core repulsion = 23482.589389 eV Total energy + Delta-G solvation = -3598.464066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.26434 -37.62107 -36.68079 -35.46403 -35.24913 -33.84890 -30.08968 -29.79896 -29.41091 -27.20206 -27.06601 -25.83319 -25.48061 -22.74496 -21.76467 -20.98829 -18.68465 -18.42617 -17.89632 -17.02180 -16.03890 -15.88889 -15.29217 -14.81445 -14.66187 -14.47094 -14.26871 -13.67036 -13.47363 -13.46754 -13.35162 -13.23170 -12.58866 -12.45890 -12.38020 -11.92221 -11.84738 -11.69125 -11.62657 -11.50951 -11.46718 -11.38125 -11.36470 -11.23117 -11.00994 -10.89102 -10.82047 -10.66402 -10.58225 -10.36936 -10.20983 -9.77269 -9.57979 -9.34807 -8.70564 -8.00938 -7.70138 -6.93289 -4.53841 1.01589 2.20611 2.63890 2.98527 3.00580 3.07800 3.49345 3.81808 4.28478 4.42428 4.81410 4.91859 4.94412 4.99533 5.09624 5.38476 5.43203 5.49199 5.63515 5.68131 5.71385 5.77548 5.85078 5.88941 5.94049 5.96622 6.02706 6.03783 6.15754 6.17755 6.19318 6.26696 6.38769 6.50156 6.60073 6.64123 6.67724 6.74691 6.78197 6.95772 7.04991 7.22221 7.39009 7.73071 7.80518 7.94189 8.39961 8.66759 8.71791 10.01910 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.005694 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.961770 B = 4915.930991 C = 6656.460008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.003 6.003 3 C 0.114 3.886 4 C -0.137 4.137 5 C -0.065 4.065 6 C -0.149 4.149 7 C -0.141 4.141 8 C -0.143 4.143 9 S 2.685 3.315 10 O -0.975 6.975 11 O -0.970 6.970 12 C -0.630 4.630 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.093 3.907 17 C -0.460 4.460 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.123 4.123 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.283 0.717 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 8.415 5.906 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.840 5.840 3 C -0.011 4.011 4 C -0.176 4.176 5 C -0.066 4.066 6 C -0.206 4.206 7 C -0.199 4.199 8 C -0.200 4.200 9 S 2.781 3.219 10 O -0.965 6.965 11 O -0.961 6.961 12 C -0.722 4.722 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.090 3.910 17 C -0.489 4.489 18 H 0.100 0.900 19 C -0.141 4.141 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.094 0.906 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.091 8.022 6.462 11.084 hybrid contribution 0.499 0.153 -1.516 1.604 sum -3.592 8.175 4.946 10.207 Atomic orbital electron populations 1.21385 0.78797 1.03108 1.01481 1.57466 1.14838 1.21513 1.90183 1.21581 0.97385 0.84654 0.97499 1.22178 1.01093 0.97069 0.97285 1.20468 0.95552 0.94740 0.95816 1.21985 0.95898 1.01630 1.01088 1.21860 1.01595 1.00876 0.95534 1.21950 0.99877 0.98411 0.99774 1.01864 0.72687 0.72030 0.75300 1.93501 1.66462 1.58430 1.78122 1.93503 1.40079 1.84430 1.78039 1.29814 1.05027 1.14456 1.22927 1.20059 0.98296 1.03264 0.95308 1.20801 0.98077 1.00830 0.94298 1.21631 0.94548 0.97334 1.00329 1.17661 0.92872 0.89719 0.90776 1.19564 0.98349 1.39720 0.91273 0.90008 1.25908 0.97882 0.92117 0.98231 1.69778 1.27275 1.34624 1.10189 0.86343 0.82055 0.80190 0.78110 1.18680 1.20258 1.18807 1.20726 0.95511 1.01933 0.96254 0.92863 0.91262 0.91035 0.90398 0.88849 0.89991 0.91588 0.91791 0.93009 0.92340 0.92957 0.93086 0.91829 0.92531 0.92970 0.92863 0.87797 0.88474 0.85798 0.90570 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 10.31 59.85 0.62 1.85 16 2 N -1.00 -15.49 3.18 -121.76 -0.39 -15.88 16 3 C 0.11 1.57 4.95 -4.04 -0.02 1.55 16 4 C -0.14 -1.97 4.59 -26.73 -0.12 -2.09 16 5 C -0.06 -0.81 0.80 -154.51 -0.12 -0.93 16 6 C -0.15 -1.88 8.12 37.16 0.30 -1.58 16 7 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 8 C -0.14 -1.45 8.12 37.16 0.30 -1.15 16 9 S 2.68 52.09 5.64 -107.50 -0.61 51.49 16 10 O -0.97 -20.36 16.35 -57.17 -0.93 -21.29 16 11 O -0.97 -20.52 15.82 -57.17 -0.90 -21.43 16 12 C -0.63 -13.80 5.96 -39.66 -0.24 -14.03 16 13 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 14 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 15 C -0.12 -2.93 8.70 -38.87 -0.34 -3.26 16 16 C 0.09 2.36 5.58 -106.82 -0.60 1.77 16 17 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 19 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -19.27 10.95 55.55 0.61 -18.66 16 21 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.12 -2.90 8.16 -38.87 -0.32 -3.21 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 29 H 0.08 0.87 6.40 -51.93 -0.33 0.53 16 30 H 0.09 1.37 5.20 -51.93 -0.27 1.10 16 31 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 2.05 7.61 -52.48 -0.40 1.65 16 43 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 45 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 46 H 0.11 2.50 7.60 -52.49 -0.40 2.10 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -28.77 376.59 -10.36 -39.13 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.36 Total: 7.59 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: -1.42 Total: -39.45 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.22 Total: -34.54 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.84 Total: -42.72 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.61 Total: 51.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.77 -10.36 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.933 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds