Wall clock time and date at job start Tue Mar 31 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99965 * 2 1 4 4 C 1.53000 * 109.47543 * 275.00298 * 3 2 1 5 5 C 1.52996 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47046 * 60.00024 * 5 4 3 7 7 C 1.53000 * 109.47394 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47026 * 300.00081 * 5 4 3 9 9 S 1.65600 * 119.99688 * 180.02562 * 2 1 3 10 10 O 1.42102 * 106.40353 * 336.45007 * 9 2 1 11 11 O 1.42101 * 106.39748 * 203.53917 * 9 2 1 12 12 C 1.76193 * 107.22282 * 89.99516 * 9 2 1 13 13 C 1.38649 * 119.87686 * 270.29710 * 12 9 2 14 14 C 1.38617 * 120.50384 * 180.25774 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87246 * 89.99680 * 12 9 2 26 26 H 1.09001 * 109.47235 * 270.00069 * 1 2 3 27 27 H 1.09002 * 109.47266 * 29.99467 * 1 2 3 28 28 H 1.09002 * 109.47349 * 149.99384 * 1 2 3 29 29 H 1.09003 * 109.47334 * 35.00634 * 3 2 1 30 30 H 1.09004 * 109.47211 * 155.00206 * 3 2 1 31 31 H 1.09001 * 109.46988 * 299.99946 * 4 3 2 32 32 H 1.08996 * 109.46987 * 60.00038 * 4 3 2 33 33 H 1.09001 * 109.47422 * 60.00162 * 6 5 4 34 34 H 1.09001 * 109.47159 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47000 * 299.99822 * 6 5 4 36 36 H 1.08996 * 109.46987 * 59.99877 * 7 5 4 37 37 H 1.09003 * 109.47608 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46988 * 299.99785 * 7 5 4 39 39 H 1.08998 * 109.47423 * 59.99931 * 8 5 4 40 40 H 1.09003 * 109.46642 * 180.02562 * 8 5 4 41 41 H 1.09001 * 109.47305 * 299.99539 * 8 5 4 42 42 H 1.08005 * 119.75337 * 359.97438 * 13 12 9 43 43 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 44 44 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07994 * 120.13007 * 0.04669 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 6 3.1091 3.0980 -1.4370 6 6 4.4963 2.8853 -0.8276 7 6 3.2547 3.6030 -2.8739 8 6 2.3414 4.1307 -0.6094 9 16 2.2929 -1.4342 -0.0006 10 8 1.4113 -2.4067 0.5436 11 8 3.5759 -1.1570 0.5439 12 6 2.5536 -1.8853 -1.6838 13 6 1.6117 -2.6580 -2.3456 14 6 1.8061 -3.0249 -3.6681 15 6 2.9337 -2.6151 -4.3426 16 6 3.8936 -1.8257 -3.6829 17 6 5.0561 -1.3993 -4.3655 18 1 5.9487 -1.1527 -3.8099 19 6 5.0501 -1.2969 -5.7612 20 7 3.9142 -1.2492 -6.4086 21 14 6.6638 -1.2283 -6.6997 22 1 7.4438 -2.4638 -6.4340 23 1 6.3861 -1.1209 -8.1546 24 1 7.4442 -0.0452 -6.2565 25 6 3.6884 -1.4642 -2.3383 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6502 2.0042 0.5895 30 1 3.1858 1.1177 0.4343 31 1 2.8910 1.0378 -2.0265 32 1 1.3553 1.9244 -1.8712 33 1 5.0434 2.1496 -1.4172 34 1 5.0416 3.8292 -0.8272 35 1 4.3923 2.5259 0.1961 36 1 2.2663 3.7546 -3.3076 37 1 3.8005 4.5465 -2.8740 38 1 3.8014 2.8674 -3.4639 39 1 2.2373 3.7712 0.4144 40 1 2.8866 5.0746 -0.6098 41 1 1.3531 4.2823 -1.0435 42 1 0.7217 -2.9804 -1.8254 43 1 1.0681 -3.6308 -4.1725 44 1 3.0814 -2.8986 -5.3742 45 1 3.9101 -1.1779 -7.3761 46 1 4.4188 -0.8589 -1.8222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:30 Heat of formation + Delta-G solvation = -93.794791 kcal Electronic energy + Delta-G solvation = -27081.735588 eV Core-core repulsion = 23482.589389 eV Total energy + Delta-G solvation = -3599.146200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.50076 -39.27460 -38.29724 -36.93502 -36.56205 -35.67107 -31.92183 -31.59398 -30.52360 -28.11354 -28.06190 -27.34377 -26.92989 -24.02011 -23.45262 -22.80387 -20.26927 -19.54025 -19.41658 -18.50502 -17.75847 -17.29857 -16.93312 -16.53218 -16.02574 -15.61196 -15.49711 -15.22919 -15.06042 -14.67074 -14.51579 -14.34730 -14.28583 -13.74970 -13.65057 -13.39542 -13.32784 -13.20840 -13.08676 -13.05615 -12.82709 -12.73465 -12.63456 -12.61392 -12.50154 -12.47545 -12.23554 -11.86007 -11.66335 -11.56211 -11.40295 -11.30425 -11.29225 -11.14142 -9.99070 -9.76555 -9.55584 -8.73567 -6.44833 -0.52265 0.41134 0.84663 1.35353 1.44257 1.47853 2.05626 2.15934 2.56095 2.75981 3.37640 3.51506 3.77492 3.89440 3.96604 4.06961 4.28716 4.35276 4.42148 4.47150 4.61807 4.71526 4.75953 4.77011 4.82852 4.86430 4.89815 4.92451 4.96706 4.98518 5.04000 5.09730 5.14481 5.17171 5.20083 5.24841 5.31680 5.41072 5.44418 5.54535 5.56644 5.65241 5.72318 5.88523 5.93461 6.10126 6.52240 6.79595 6.84801 8.23872 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.005694 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.961770 B = 4915.930991 C = 6656.460008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.995 5.995 3 C 0.111 3.889 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.150 4.150 7 C -0.140 4.140 8 C -0.137 4.137 9 S 2.706 3.294 10 O -0.986 6.986 11 O -0.991 6.991 12 C -0.638 4.638 13 C -0.151 4.151 14 C -0.122 4.122 15 C -0.142 4.142 16 C 0.066 3.934 17 C -0.495 4.495 18 H 0.076 0.924 19 C 0.041 3.959 20 N -0.819 5.819 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.135 4.135 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.291 0.709 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 9.983 6.851 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.834 5.834 3 C -0.013 4.013 4 C -0.175 4.175 5 C -0.065 4.065 6 C -0.207 4.207 7 C -0.197 4.197 8 C -0.194 4.194 9 S 2.799 3.201 10 O -0.976 6.976 11 O -0.981 6.981 12 C -0.727 4.727 13 C -0.171 4.171 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.062 3.938 17 C -0.524 4.524 18 H 0.094 0.906 19 C -0.174 4.174 20 N -0.444 5.444 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.188 1.188 24 H -0.184 1.184 25 C -0.156 4.156 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.364 9.569 7.382 13.223 hybrid contribution 0.784 -0.295 -1.732 1.924 sum -4.579 9.275 5.650 11.786 Atomic orbital electron populations 1.21745 0.76561 1.04272 1.03401 1.57236 1.16171 1.20463 1.89566 1.21787 0.97519 0.84515 0.97507 1.22138 1.01035 0.97139 0.97145 1.20472 0.95461 0.94579 0.95940 1.21999 0.96158 1.01682 1.00865 1.21850 1.01600 1.00682 0.95606 1.21903 0.99933 0.97846 0.99757 1.01235 0.72302 0.72698 0.73846 1.93478 1.66539 1.59878 1.77731 1.93471 1.41767 1.84977 1.77895 1.30320 1.04125 1.13604 1.24655 1.20421 0.98950 1.02526 0.95227 1.21122 0.97788 1.00495 0.94748 1.21624 0.95777 0.98616 1.00169 1.18003 0.93543 0.90388 0.91830 1.19777 0.98467 1.41604 0.92585 0.90582 1.26668 1.01237 0.91147 0.98396 1.69812 1.29080 1.34689 1.10849 0.85324 0.77658 0.80084 0.77193 1.18619 1.18828 1.18375 1.20723 0.96370 1.02485 0.96020 0.90576 0.88551 0.91558 0.86352 0.89906 0.94118 0.90911 0.94760 0.91267 0.91696 0.92466 0.91370 0.95131 0.91291 0.91788 0.91983 0.85345 0.85675 0.86933 0.89776 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.31 127.77 1.32 3.18 16 2 N -1.00 -28.88 3.18 -539.12 -1.72 -30.59 16 3 C 0.11 2.85 4.95 86.38 0.43 3.28 16 4 C -0.14 -3.81 4.59 30.59 0.14 -3.67 16 5 C -0.06 -1.52 0.80 -52.18 -0.04 -1.56 16 6 C -0.15 -3.75 8.12 71.98 0.58 -3.17 16 7 C -0.14 -3.57 8.47 71.98 0.61 -2.96 16 8 C -0.14 -2.32 8.12 71.98 0.58 -1.73 16 9 S 2.71 103.58 5.64 -56.49 -0.32 103.26 16 10 O -0.99 -39.83 16.35 -128.00 -2.09 -41.92 16 11 O -0.99 -42.20 15.82 -128.00 -2.02 -44.22 16 12 C -0.64 -28.36 5.96 22.22 0.13 -28.23 16 13 C -0.15 -6.51 9.53 22.46 0.21 -6.30 16 14 C -0.12 -5.52 10.02 22.22 0.22 -5.29 16 15 C -0.14 -7.27 8.70 22.73 0.20 -7.07 16 16 C 0.07 3.50 5.58 -21.29 -0.12 3.38 16 17 C -0.50 -26.28 9.05 23.46 0.21 -26.07 16 18 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 19 C 0.04 2.03 5.14 85.25 0.44 2.47 16 20 N -0.82 -40.98 10.95 21.83 0.24 -40.74 16 21 Si 0.98 37.29 29.60 68.60 2.03 39.32 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 C -0.13 -6.68 8.16 22.73 0.19 -6.49 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.62 8.07 -2.39 -0.02 1.61 16 28 H 0.07 1.55 7.79 -2.39 -0.02 1.53 16 29 H 0.12 2.14 6.40 -2.39 -0.02 2.13 16 30 H 0.08 2.34 5.20 -2.38 -0.01 2.33 16 31 H 0.04 1.48 7.00 -2.39 -0.02 1.47 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.52 6.43 -2.39 -0.02 1.50 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.13 4.86 7.61 -2.91 -0.02 4.84 16 43 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 44 H 0.11 5.91 6.15 -2.91 -0.02 5.89 16 45 H 0.29 13.16 8.30 -92.70 -0.77 12.39 16 46 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -64.38 376.59 2.18 -62.20 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.96 Total: 32.92 kcal Atomic # 6 Polarization: -85.33 SS G_CDS: 5.11 Total: -80.23 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.48 Total: -71.33 kcal Atomic # 8 Polarization: -82.02 SS G_CDS: -4.12 Total: -86.14 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Atomic # 16 Polarization: 103.58 SS G_CDS: -0.32 Total: 103.26 kcal Total: -64.38 2.18 -62.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.594 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds