Wall clock time and date at job start Tue Mar 31 2020 14:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76199 * 99.99873 * 2 1 4 4 C 1.36527 * 125.60927 * 179.97438 * 3 2 1 5 5 C 1.39661 * 107.18727 * 179.73258 * 4 3 2 6 6 C 1.50697 * 126.62379 * 180.02562 * 5 4 3 7 7 C 1.37998 * 106.74857 * 0.02562 * 5 4 3 8 8 C 1.41620 * 126.01075 * 179.97438 * 7 5 4 9 9 O 1.21798 * 120.00366 * 352.96776 * 8 7 5 10 10 N 1.34779 * 120.00020 * 172.97078 * 8 7 5 11 11 C 1.46501 * 119.99993 * 4.22676 * 10 8 7 12 12 C 1.50703 * 109.46838 * 83.07293 * 11 10 8 13 13 H 1.07999 * 119.99926 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00236 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99741 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00275 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47054 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47232 * 120.00160 * 16 14 12 19 19 H 1.48499 * 109.47265 * 240.00134 * 16 14 12 20 20 C 1.46501 * 120.00117 * 184.23646 * 10 8 7 21 21 C 1.52992 * 109.47534 * 89.99643 * 20 10 8 22 22 C 1.52997 * 109.47343 * 179.97438 * 21 20 10 23 23 C 1.52997 * 109.47353 * 174.99891 * 22 21 20 24 24 C 1.52994 * 109.47145 * 295.00055 * 22 21 20 25 25 O 1.34145 * 125.61644 * 359.68784 * 3 2 1 26 26 H 1.08995 * 109.47588 * 300.00146 * 1 2 3 27 27 H 1.09006 * 109.46606 * 60.00115 * 1 2 3 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08002 * 126.40884 * 359.73718 * 4 3 2 30 30 H 1.08999 * 109.47055 * 90.02662 * 6 5 4 31 31 H 1.09006 * 109.46843 * 210.02310 * 6 5 4 32 32 H 1.09002 * 109.47380 * 330.02650 * 6 5 4 33 33 H 1.08994 * 109.47496 * 203.07333 * 11 10 8 34 34 H 1.08995 * 109.47403 * 323.07951 * 11 10 8 35 35 H 0.97002 * 119.99717 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46897 * 209.99833 * 20 10 8 37 37 H 1.09004 * 109.46815 * 329.98975 * 20 10 8 38 38 H 1.09000 * 109.47184 * 300.00015 * 21 20 10 39 39 H 1.09000 * 109.47153 * 59.99818 * 21 20 10 40 40 H 1.09000 * 109.47003 * 54.99775 * 22 21 20 41 41 H 1.09000 * 109.47160 * 59.99981 * 23 22 21 42 42 H 1.08996 * 109.47359 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46994 * 300.00131 * 23 22 21 44 44 H 1.08999 * 109.47345 * 60.00065 * 24 22 21 45 45 H 1.09005 * 109.47240 * 179.97438 * 24 22 21 46 46 H 1.09000 * 109.46942 * 299.99757 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3471 2.3254 0.0005 5 6 3.1425 3.7069 -0.0059 6 6 4.2072 4.7734 -0.0084 7 6 1.7771 3.9067 -0.0095 8 6 1.1191 5.1608 -0.0158 9 8 1.7628 6.1870 0.1106 10 7 -0.2195 5.2187 -0.1617 11 6 -1.0041 3.9829 -0.2207 12 6 -1.2811 3.4965 1.1785 13 1 -0.9101 4.0525 2.0268 14 6 -2.0089 2.3422 1.3757 15 7 -2.4610 1.6654 0.3426 16 14 -2.3528 1.7396 3.1100 17 1 -1.7399 2.6729 4.0889 18 1 -3.8200 1.6828 3.3326 19 1 -1.7725 0.3842 3.2873 20 6 -0.8900 6.5175 -0.2614 21 6 -0.9685 6.9396 -1.7298 22 6 -1.6692 8.2957 -1.8340 23 6 -1.6373 8.7761 -3.2862 24 6 -3.1219 8.1556 -1.3749 25 8 1.1776 2.6939 -0.0059 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 4.3008 1.8187 0.0049 30 1 4.4656 5.0263 -1.0367 31 1 3.8331 5.6614 0.5012 32 1 5.0929 4.4038 0.5084 33 1 -1.9474 4.1754 -0.7318 34 1 -0.4443 3.2227 -0.7654 35 1 -2.9734 0.8535 0.4814 36 1 -1.8970 6.4389 0.1484 37 1 -0.3260 7.2616 0.3011 38 1 0.0385 7.0182 -2.1396 39 1 -1.5325 6.1955 -2.2922 40 1 -1.1562 9.0193 -1.2005 41 1 -2.1503 8.0525 -3.9196 42 1 -2.1361 9.7424 -3.3603 43 1 -0.6023 8.8759 -3.6132 44 1 -3.1447 7.8134 -0.3403 45 1 -3.6211 9.1218 -1.4487 46 1 -3.6349 7.4319 -2.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597143721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:42 Heat of formation + Delta-G solvation = -34.926611 kcal Electronic energy + Delta-G solvation = -26995.005042 eV Core-core repulsion = 23398.411559 eV Total energy + Delta-G solvation = -3596.593484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02273 -38.98915 -36.63025 -35.00356 -33.40465 -32.68491 -30.42959 -29.02626 -28.33591 -27.51374 -27.05315 -26.53105 -23.73590 -23.16467 -21.83143 -20.49047 -19.73945 -18.71025 -17.18960 -16.74721 -16.45938 -15.69543 -15.55732 -15.07881 -14.61500 -14.42842 -14.12715 -13.77772 -13.49077 -13.20228 -12.94667 -12.88350 -12.70064 -12.62569 -12.48156 -12.40389 -12.30362 -12.08801 -11.90089 -11.68027 -11.30786 -11.21466 -11.12949 -10.90766 -10.85651 -10.61619 -10.51493 -10.45487 -10.27905 -10.09889 -9.76783 -9.48351 -9.30141 -8.75153 -8.52968 -7.79082 -6.93238 -6.22931 -4.26450 1.52353 1.68266 2.41099 2.71421 3.14014 3.24139 3.30264 3.75887 3.92570 4.13575 4.30764 5.04058 5.08335 5.09637 5.12606 5.20999 5.39627 5.58679 5.64917 5.69113 5.71154 5.81830 5.87347 5.94167 5.96039 5.96715 5.98917 6.03829 6.07824 6.16258 6.22992 6.25735 6.34094 6.37134 6.52527 6.59627 6.64712 6.68620 6.72932 6.86882 7.21207 7.34844 7.55166 7.72481 8.01776 8.21656 8.74011 8.89750 9.37272 10.82667 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.005506 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.055705 B = 5083.827735 C = 6871.374722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.056 6.056 3 C -0.001 4.001 4 C -0.206 4.206 5 C -0.091 4.091 6 C -0.088 4.088 7 C -0.067 4.067 8 C 0.597 3.403 9 O -0.558 6.558 10 N -0.588 5.588 11 C 0.234 3.766 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.887 5.887 16 Si 0.880 3.120 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.119 3.881 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.150 4.150 25 O -0.095 6.095 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 3.142 -4.406 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.181 5.819 3 C -0.166 4.166 4 C -0.233 4.233 5 C -0.095 4.095 6 C -0.144 4.144 7 C -0.124 4.124 8 C 0.387 3.613 9 O -0.442 6.442 10 N -0.317 5.317 11 C 0.114 3.886 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.527 5.527 16 Si 0.708 3.292 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.004 4.004 21 C -0.166 4.166 22 C -0.112 4.112 23 C -0.202 4.202 24 C -0.207 4.207 25 O 0.011 5.989 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.168 0.832 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.855 2.423 -4.387 6.978 hybrid contribution -1.172 0.278 1.020 1.578 sum 3.683 2.701 -3.367 5.674 Atomic orbital electron populations 1.23840 0.90419 1.05991 1.09850 1.85358 1.10950 0.92915 1.92676 1.24712 0.90595 0.94440 1.06862 1.21169 0.96801 0.92819 1.12511 1.20615 0.93090 0.94510 1.01302 1.20354 0.95000 0.96910 1.02182 1.21068 0.91601 0.84914 1.14792 1.15433 0.82399 0.85836 0.77616 1.90740 1.65929 1.33657 1.53824 1.48227 1.05932 1.08944 1.68592 1.19664 0.91159 0.79868 0.97883 1.21471 1.33661 1.08521 0.92132 0.92401 1.24775 0.95543 0.96326 0.96667 1.69959 1.36545 1.17159 1.29028 0.86713 0.78261 0.78997 0.85272 1.19693 1.20773 1.20586 1.21407 0.97963 0.85199 0.95831 1.22000 1.00666 0.96271 0.97679 1.21039 0.96347 0.97097 0.96716 1.21821 1.01483 1.00577 0.96332 1.21904 0.95777 1.01149 1.01855 1.85063 1.32131 1.12995 1.68676 0.87443 0.88005 0.88918 0.83239 0.91540 0.89355 0.92073 0.94298 0.93243 0.92739 0.90234 0.90791 0.91980 0.91790 0.91258 0.92801 0.93039 0.92884 0.92127 0.93207 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.18 101.05 0.93 -1.48 16 2 S -0.06 -0.95 22.90 -107.50 -2.46 -3.41 16 3 C 0.00 -0.01 7.28 30.11 0.22 0.21 16 4 C -0.21 -3.63 10.78 -39.67 -0.43 -4.06 16 5 C -0.09 -1.71 6.21 -104.18 -0.65 -2.36 16 6 C -0.09 -1.38 9.86 36.00 0.36 -1.03 16 7 C -0.07 -1.44 6.60 -38.38 -0.25 -1.70 16 8 C 0.60 13.19 7.40 -14.97 -0.11 13.08 16 9 O -0.56 -12.51 14.16 5.10 0.07 -12.44 16 10 N -0.59 -12.60 2.48 -178.47 -0.44 -13.04 16 11 C 0.23 5.48 4.77 -5.19 -0.02 5.45 16 12 C -0.52 -13.14 8.33 -34.44 -0.29 -13.43 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.70 4.14 -17.82 -0.07 1.63 16 15 N -0.89 -21.93 11.70 55.43 0.65 -21.28 16 16 Si 0.88 19.91 29.33 -169.99 -4.99 14.93 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.12 2.16 5.16 -4.05 -0.02 2.14 16 21 C -0.13 -1.99 5.01 -26.74 -0.13 -2.13 16 22 C -0.09 -1.19 2.92 -90.63 -0.26 -1.45 16 23 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 24 C -0.15 -1.82 8.95 37.15 0.33 -1.49 16 25 O -0.09 -2.08 5.83 3.35 0.02 -2.06 16 26 H 0.11 2.28 5.90 -51.92 -0.31 1.97 16 27 H 0.10 2.01 8.03 -51.91 -0.42 1.59 16 28 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 29 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.53 6.30 -51.93 -0.33 1.21 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.95 8.02 -51.93 -0.42 0.53 16 34 H 0.05 1.24 5.38 -51.93 -0.28 0.96 16 35 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.08 1.42 6.49 -51.93 -0.34 1.08 16 37 H 0.07 1.36 7.37 -51.93 -0.38 0.97 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -26.37 381.29 -8.90 -35.27 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.42 Total: 4.18 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.07 Total: -7.89 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.21 Total: -34.32 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.99 Total: 14.93 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.46 Total: -3.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.37 -8.90 -35.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.341 kcal (2) G-P(sol) polarization free energy of solvation -26.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds