Wall clock time and date at job start Tue Mar 31 2020 14:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76199 * 99.99873 * 2 1 4 4 C 1.36527 * 125.60927 * 179.97438 * 3 2 1 5 5 C 1.39661 * 107.18727 * 179.73258 * 4 3 2 6 6 C 1.50697 * 126.62379 * 180.02562 * 5 4 3 7 7 C 1.37998 * 106.74857 * 0.02562 * 5 4 3 8 8 C 1.41620 * 126.01075 * 179.97438 * 7 5 4 9 9 O 1.21798 * 120.00366 * 352.96776 * 8 7 5 10 10 N 1.34779 * 120.00020 * 172.97078 * 8 7 5 11 11 C 1.46501 * 119.99993 * 4.22676 * 10 8 7 12 12 C 1.50703 * 109.46838 * 83.07293 * 11 10 8 13 13 H 1.07999 * 119.99926 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00236 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99741 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00275 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47054 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47232 * 120.00160 * 16 14 12 19 19 H 1.48499 * 109.47265 * 240.00134 * 16 14 12 20 20 C 1.46501 * 120.00117 * 184.23646 * 10 8 7 21 21 C 1.52992 * 109.47534 * 89.99643 * 20 10 8 22 22 C 1.52997 * 109.47343 * 179.97438 * 21 20 10 23 23 C 1.52997 * 109.47353 * 174.99891 * 22 21 20 24 24 C 1.52994 * 109.47145 * 295.00055 * 22 21 20 25 25 O 1.34145 * 125.61644 * 359.68784 * 3 2 1 26 26 H 1.08995 * 109.47588 * 300.00146 * 1 2 3 27 27 H 1.09006 * 109.46606 * 60.00115 * 1 2 3 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08002 * 126.40884 * 359.73718 * 4 3 2 30 30 H 1.08999 * 109.47055 * 90.02662 * 6 5 4 31 31 H 1.09006 * 109.46843 * 210.02310 * 6 5 4 32 32 H 1.09002 * 109.47380 * 330.02650 * 6 5 4 33 33 H 1.08994 * 109.47496 * 203.07333 * 11 10 8 34 34 H 1.08995 * 109.47403 * 323.07951 * 11 10 8 35 35 H 0.97002 * 119.99717 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46897 * 209.99833 * 20 10 8 37 37 H 1.09004 * 109.46815 * 329.98975 * 20 10 8 38 38 H 1.09000 * 109.47184 * 300.00015 * 21 20 10 39 39 H 1.09000 * 109.47153 * 59.99818 * 21 20 10 40 40 H 1.09000 * 109.47003 * 54.99775 * 22 21 20 41 41 H 1.09000 * 109.47160 * 59.99981 * 23 22 21 42 42 H 1.08996 * 109.47359 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46994 * 300.00131 * 23 22 21 44 44 H 1.08999 * 109.47345 * 60.00065 * 24 22 21 45 45 H 1.09005 * 109.47240 * 179.97438 * 24 22 21 46 46 H 1.09000 * 109.46942 * 299.99757 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3471 2.3254 0.0005 5 6 3.1425 3.7069 -0.0059 6 6 4.2072 4.7734 -0.0084 7 6 1.7771 3.9067 -0.0095 8 6 1.1191 5.1608 -0.0158 9 8 1.7628 6.1870 0.1106 10 7 -0.2195 5.2187 -0.1617 11 6 -1.0041 3.9829 -0.2207 12 6 -1.2811 3.4965 1.1785 13 1 -0.9101 4.0525 2.0268 14 6 -2.0089 2.3422 1.3757 15 7 -2.4610 1.6654 0.3426 16 14 -2.3528 1.7396 3.1100 17 1 -1.7399 2.6729 4.0889 18 1 -3.8200 1.6828 3.3326 19 1 -1.7725 0.3842 3.2873 20 6 -0.8900 6.5175 -0.2614 21 6 -0.9685 6.9396 -1.7298 22 6 -1.6692 8.2957 -1.8340 23 6 -1.6373 8.7761 -3.2862 24 6 -3.1219 8.1556 -1.3749 25 8 1.1776 2.6939 -0.0059 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 4.3008 1.8187 0.0049 30 1 4.4656 5.0263 -1.0367 31 1 3.8331 5.6614 0.5012 32 1 5.0929 4.4038 0.5084 33 1 -1.9474 4.1754 -0.7318 34 1 -0.4443 3.2227 -0.7654 35 1 -2.9734 0.8535 0.4814 36 1 -1.8970 6.4389 0.1484 37 1 -0.3260 7.2616 0.3011 38 1 0.0385 7.0182 -2.1396 39 1 -1.5325 6.1955 -2.2922 40 1 -1.1562 9.0193 -1.2005 41 1 -2.1503 8.0525 -3.9196 42 1 -2.1361 9.7424 -3.3603 43 1 -0.6023 8.8759 -3.6132 44 1 -3.1447 7.8134 -0.3403 45 1 -3.6211 9.1218 -1.4487 46 1 -3.6349 7.4319 -2.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597143721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:41 Heat of formation + Delta-G solvation = -46.062572 kcal Electronic energy + Delta-G solvation = -26995.487934 eV Core-core repulsion = 23398.411559 eV Total energy + Delta-G solvation = -3597.076375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.54347 -40.63175 -37.95374 -36.55923 -34.93066 -34.51690 -31.88909 -30.46214 -29.79985 -29.19709 -28.12267 -27.95939 -25.20204 -24.97092 -23.32634 -21.94229 -20.88189 -20.31078 -18.86002 -18.39012 -18.13438 -17.33928 -17.18490 -16.41470 -16.34237 -15.88304 -15.58825 -15.14618 -14.77470 -14.56878 -14.43277 -14.39747 -14.21321 -14.07911 -14.01591 -13.88419 -13.63598 -13.27560 -13.18195 -13.03371 -12.90694 -12.72462 -12.66151 -12.51255 -12.31042 -12.12597 -11.91035 -11.84300 -11.62619 -11.56544 -11.42119 -10.97171 -10.94623 -10.44121 -10.23281 -9.49033 -8.35791 -8.15458 -6.25672 -0.05270 0.26474 0.96526 1.26550 1.32178 1.38310 1.46062 2.16253 2.28761 2.39300 2.62354 3.12245 3.78697 3.82538 3.91869 3.99642 4.06758 4.24336 4.29962 4.32914 4.40408 4.53369 4.55384 4.65063 4.68304 4.75529 4.82416 4.83384 4.87338 4.93420 4.99964 5.03534 5.11039 5.13544 5.17184 5.19455 5.27771 5.32970 5.46423 5.49244 5.50993 5.68270 5.76970 5.95087 6.08817 6.45582 6.79914 7.17892 7.40675 8.88984 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.005506 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.055705 B = 5083.827735 C = 6871.374722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.004 6.004 3 C -0.025 4.025 4 C -0.197 4.197 5 C -0.080 4.080 6 C -0.085 4.085 7 C -0.114 4.114 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.595 5.595 11 C 0.255 3.745 12 C -0.534 4.534 13 H 0.033 0.967 14 C 0.048 3.952 15 N -0.894 5.894 16 Si 0.924 3.076 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.268 1.268 20 C 0.118 3.882 21 C -0.115 4.115 22 C -0.089 4.089 23 C -0.141 4.141 24 C -0.147 4.147 25 O -0.119 6.119 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.186 0.814 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 2.511 -4.612 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.234 5.766 3 C -0.190 4.190 4 C -0.224 4.224 5 C -0.085 4.085 6 C -0.141 4.141 7 C -0.170 4.170 8 C 0.382 3.618 9 O -0.456 6.456 10 N -0.323 5.323 11 C 0.135 3.865 12 C -0.573 4.573 13 H 0.052 0.948 14 C -0.154 4.154 15 N -0.533 5.533 16 Si 0.750 3.250 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.193 1.193 20 C -0.005 4.005 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.198 4.198 24 C -0.205 4.205 25 O -0.014 6.014 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.204 0.796 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.792 1.794 -4.606 7.615 hybrid contribution -1.409 0.401 1.090 1.826 sum 4.383 2.196 -3.516 6.033 Atomic orbital electron populations 1.23679 0.92158 1.06983 1.07286 1.85076 1.08780 0.90587 1.92157 1.25459 0.91222 0.95620 1.06691 1.21573 0.97576 0.92190 1.11041 1.21115 0.92617 0.95955 0.98800 1.20422 0.95062 0.95310 1.03320 1.21218 0.92908 0.84771 1.18091 1.15626 0.82461 0.86319 0.77396 1.90707 1.66031 1.34123 1.54718 1.48271 1.06014 1.09325 1.68721 1.19239 0.90248 0.80380 0.96621 1.21392 1.34683 1.09157 0.92032 0.94819 1.25157 0.95111 0.96090 0.99025 1.69995 1.36121 1.17198 1.29938 0.86054 0.78166 0.78713 0.82047 1.21149 1.20197 1.19310 1.21552 0.97433 0.83862 0.97629 1.21887 1.00257 0.97864 0.95397 1.21029 0.96372 0.95184 0.98221 1.21789 1.01799 1.01479 0.94781 1.21884 0.95423 1.02192 1.00971 1.85000 1.33302 1.13541 1.69560 0.90385 0.90009 0.86184 0.79646 0.90003 0.91272 0.88816 0.95869 0.94604 0.92191 0.90353 0.91160 0.93123 0.92701 0.90872 0.92850 0.91086 0.92898 0.93252 0.91059 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.18 113.37 1.04 -3.69 16 2 S 0.00 -0.12 22.90 -56.49 -1.29 -1.41 16 3 C -0.03 -0.95 7.28 67.42 0.49 -0.46 16 4 C -0.20 -6.54 10.78 22.21 0.24 -6.30 16 5 C -0.08 -2.96 6.21 -19.58 -0.12 -3.08 16 6 C -0.08 -2.52 9.86 71.23 0.70 -1.82 16 7 C -0.11 -5.01 6.60 23.05 0.15 -4.86 16 8 C 0.59 27.09 7.40 85.08 0.63 27.72 16 9 O -0.57 -26.36 14.16 -4.66 -0.07 -26.42 16 10 N -0.59 -26.72 2.48 -836.73 -2.07 -28.79 16 11 C 0.26 12.54 4.77 85.63 0.41 12.95 16 12 C -0.53 -28.03 8.33 25.60 0.21 -27.82 16 13 H 0.03 1.90 7.81 -2.91 -0.02 1.87 16 14 C 0.05 2.40 4.14 84.65 0.35 2.75 16 15 N -0.89 -44.54 11.70 21.45 0.25 -44.29 16 16 Si 0.92 40.94 29.33 68.60 2.01 42.96 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 C 0.12 4.46 5.16 86.38 0.45 4.90 16 21 C -0.12 -3.71 5.01 30.59 0.15 -3.56 16 22 C -0.09 -2.23 2.92 -10.80 -0.03 -2.26 16 23 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 24 C -0.15 -3.50 8.95 71.98 0.64 -2.85 16 25 O -0.12 -5.34 5.83 -10.94 -0.06 -5.41 16 26 H 0.08 3.29 5.90 -2.40 -0.01 3.28 16 27 H 0.08 3.25 8.03 -2.39 -0.02 3.23 16 28 H 0.12 3.51 8.14 -2.40 -0.02 3.49 16 29 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.36 6.30 -2.38 -0.02 2.35 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.02 1.19 8.02 -2.39 -0.02 1.17 16 34 H 0.04 1.89 5.38 -2.39 -0.01 1.88 16 35 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 36 H 0.08 2.94 6.49 -2.39 -0.02 2.93 16 37 H 0.07 2.69 7.37 -2.38 -0.02 2.67 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 1.27 6.56 -2.39 -0.02 1.25 16 45 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -57.94 381.29 5.71 -52.24 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.96 Total: 21.81 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.98 Total: -10.69 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.82 Total: -73.08 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.13 Total: -31.83 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.01 Total: 42.96 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.29 Total: -1.41 kcal Total: -57.94 5.71 -52.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.173 kcal (2) G-P(sol) polarization free energy of solvation -57.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds