Wall clock time and date at job start Tue Mar 31 2020 14:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00203 * 2 1 4 4 C 1.50694 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.33822 * 122.44856 * 269.97634 * 4 3 2 6 6 S 1.70616 * 110.95252 * 179.78168 * 5 4 3 7 7 C 1.75832 * 91.56544 * 0.30510 * 6 5 4 8 8 C 1.46582 * 125.45797 * 179.97438 * 7 6 5 9 9 O 1.21699 * 119.99895 * 186.48434 * 8 7 6 10 10 N 1.34773 * 120.00160 * 6.48321 * 8 7 6 11 11 C 1.46497 * 119.99889 * 5.69701 * 10 8 7 12 12 C 1.50709 * 109.46984 * 274.84582 * 11 10 8 13 13 H 1.07995 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99934 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47238 * 59.99510 * 16 14 12 18 18 H 1.48498 * 109.46910 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47069 * 299.99507 * 16 14 12 20 20 C 1.46503 * 120.00026 * 185.69868 * 10 8 7 21 21 C 1.53001 * 109.46832 * 269.99831 * 20 10 8 22 22 C 1.52998 * 109.46947 * 179.97438 * 21 20 10 23 23 C 1.52999 * 109.47306 * 65.00082 * 22 21 20 24 24 C 1.53002 * 109.47170 * 184.99806 * 22 21 20 25 25 C 1.36648 * 109.08041 * 359.69995 * 7 6 5 26 26 H 1.08999 * 109.47170 * 59.99954 * 1 2 3 27 27 H 1.09003 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47150 * 300.00526 * 1 2 3 29 29 H 1.09002 * 109.46979 * 59.99728 * 3 2 1 30 30 H 1.09003 * 109.46530 * 300.00013 * 3 2 1 31 31 H 1.07993 * 124.52403 * 0.02562 * 5 4 3 32 32 H 1.08996 * 109.47354 * 34.84145 * 11 10 8 33 33 H 1.08999 * 109.47101 * 154.84677 * 11 10 8 34 34 H 0.96996 * 119.99917 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46832 * 29.99727 * 20 10 8 36 36 H 1.08996 * 109.47340 * 150.00060 * 20 10 8 37 37 H 1.08999 * 109.46936 * 300.00225 * 21 20 10 38 38 H 1.08996 * 109.46971 * 60.00003 * 21 20 10 39 39 H 1.09004 * 109.47490 * 304.99902 * 22 21 20 40 40 H 1.09004 * 109.46993 * 59.99516 * 23 22 21 41 41 H 1.08999 * 109.47268 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47130 * 299.99805 * 23 22 21 43 43 H 1.09000 * 109.46559 * 60.00319 * 24 22 21 44 44 H 1.08999 * 109.47062 * 179.97438 * 24 22 21 45 45 H 1.08996 * 109.47293 * 300.00425 * 24 22 21 46 46 H 1.08003 * 123.34721 * 180.25047 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2279 1.1305 1.1302 6 16 5.8942 0.9922 0.7909 7 6 5.5932 1.0219 -0.9412 8 6 6.6197 0.9394 -1.9843 9 8 6.3133 1.0875 -3.1527 10 7 7.9030 0.6997 -1.6493 11 6 8.2531 0.3979 -0.2592 12 6 8.4500 1.6849 0.5000 13 1 8.3271 2.6326 -0.0029 14 6 8.7880 1.6522 1.8362 15 7 8.9382 0.4979 2.4485 16 14 9.0314 3.2473 2.7774 17 1 7.7749 4.0381 2.7444 18 1 9.3864 2.9413 4.1865 19 1 10.1258 4.0304 2.1496 20 6 8.9478 0.7409 -2.6755 21 6 9.1156 -0.6508 -3.2886 22 6 10.2063 -0.6076 -4.3606 23 6 11.5521 -0.2885 -3.7065 24 6 10.2885 -1.9661 -5.0597 25 6 4.2483 1.1280 -1.1591 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8063 1.1640 2.1239 32 1 7.4493 -0.1763 0.2015 33 1 9.1750 -0.1831 -0.2346 34 1 9.1757 0.4749 3.3887 35 1 8.6646 1.4493 -3.4541 36 1 9.8887 1.0547 -2.2236 37 1 9.3987 -1.3590 -2.5099 38 1 8.1747 -0.9645 -3.7405 39 1 9.9662 0.1637 -5.0925 40 1 11.7923 -1.0598 -2.9746 41 1 12.3291 -0.2573 -4.4703 42 1 11.4937 0.6793 -3.2085 43 1 9.3297 -2.1934 -5.5257 44 1 11.0652 -1.9352 -5.8237 45 1 10.5286 -2.7374 -4.3278 46 1 3.8074 1.1620 -2.1444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597148560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:56 Heat of formation + Delta-G solvation = -66.957562 kcal Electronic energy + Delta-G solvation = -25842.839578 eV Core-core repulsion = 22244.857128 eV Total energy + Delta-G solvation = -3597.982450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.19515 -38.21522 -36.71679 -36.11348 -34.83999 -32.82761 -30.38566 -28.99453 -27.27086 -27.23612 -26.95479 -25.46143 -24.24481 -23.31689 -21.96515 -19.74702 -19.08214 -18.21086 -17.15933 -16.73617 -16.21410 -15.85179 -15.57631 -15.12545 -14.95392 -14.79489 -14.37741 -14.26460 -13.85758 -13.45620 -13.06265 -12.66389 -12.53781 -12.48048 -12.41179 -12.14374 -12.05258 -11.97761 -11.67800 -11.55165 -11.43264 -11.22591 -11.12472 -10.94095 -10.83065 -10.71295 -10.46963 -10.34037 -10.15011 -9.93672 -9.58223 -9.26496 -9.14748 -8.76837 -8.10605 -7.74339 -7.49885 -6.43710 -4.45339 1.41152 2.61475 2.87556 3.02344 3.16571 3.17909 3.21584 3.87098 3.95935 4.16551 4.35673 4.91073 5.07193 5.12341 5.15979 5.23477 5.26808 5.38350 5.49618 5.51743 5.63294 5.68729 5.73380 5.74078 5.84570 5.90469 5.90897 6.01075 6.02459 6.11515 6.21560 6.24607 6.35142 6.40269 6.53444 6.59464 6.67788 6.69947 6.93831 7.02481 7.11316 7.30963 7.41385 7.53027 7.71494 8.21596 8.55850 8.97403 9.13116 10.59192 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.004865 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.109098 B = 5754.249606 C = 8291.118003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.127 3.873 4 C -0.145 4.145 5 C -0.319 4.319 6 S 0.417 5.583 7 C -0.298 4.298 8 C 0.590 3.410 9 O -0.567 6.567 10 N -0.598 5.598 11 C 0.223 3.777 12 C -0.533 4.533 13 H 0.071 0.929 14 C 0.078 3.922 15 N -0.871 5.871 16 Si 0.889 3.111 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.124 3.876 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.065 4.065 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.146 0.854 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.273 0.727 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -1.198 -4.189 6.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.049 3.951 4 C -0.158 4.158 5 C -0.457 4.457 6 S 0.697 5.303 7 C -0.420 4.420 8 C 0.380 3.620 9 O -0.449 6.449 10 N -0.327 5.327 11 C 0.100 3.900 12 C -0.578 4.578 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.506 5.506 16 Si 0.716 3.284 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.196 1.196 20 C 0.001 3.999 21 C -0.168 4.168 22 C -0.112 4.112 23 C -0.207 4.207 24 C -0.202 4.202 25 C -0.099 4.099 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.035 -1.519 -3.622 4.963 hybrid contribution -1.498 1.192 -0.053 1.915 sum -4.533 -0.328 -3.674 5.844 Atomic orbital electron populations 1.22702 0.81974 1.02365 0.99584 1.88018 1.18723 1.28412 1.95278 1.21006 0.90166 0.84192 0.99742 1.18031 0.94147 1.11220 0.92392 1.26813 1.08751 1.08174 1.01998 1.86417 0.91989 1.57125 0.94759 1.24673 0.97411 1.19929 0.99946 1.17025 0.81857 0.76211 0.86937 1.90691 1.81657 1.53432 1.19140 1.48021 1.05725 1.68176 1.10808 1.19678 0.97489 0.97061 0.75732 1.21525 1.47843 0.93292 0.95122 0.91077 1.24952 0.93880 0.96851 0.97323 1.69905 1.44330 1.24479 1.11886 0.86637 0.79583 0.83304 0.78920 1.19351 1.20676 1.19606 1.21366 0.91070 0.96598 0.90844 1.22008 0.98542 0.98318 0.97893 1.21047 0.95316 0.97589 0.97297 1.21904 0.96275 1.02116 1.00360 1.21820 1.01276 0.97090 1.00025 1.20171 0.91281 0.99864 0.98574 0.94345 0.89959 0.94456 0.93243 0.93105 0.83630 0.93878 0.93081 0.91749 0.91076 0.90206 0.91800 0.91778 0.91320 0.92618 0.93254 0.92140 0.92873 0.93091 0.92795 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -6.14 10.69 -35.23 -0.38 -6.52 16 3 C 0.13 1.95 6.18 36.00 0.22 2.18 16 4 C -0.14 -2.68 5.41 -106.46 -0.58 -3.26 16 5 C -0.32 -5.97 10.67 29.18 0.31 -5.66 16 6 S 0.42 8.65 15.51 -107.50 -1.67 6.98 16 7 C -0.30 -6.44 6.19 -36.79 -0.23 -6.67 16 8 C 0.59 13.33 7.58 -12.90 -0.10 13.24 16 9 O -0.57 -13.63 16.49 5.19 0.09 -13.54 16 10 N -0.60 -12.65 2.47 -176.64 -0.44 -13.08 16 11 C 0.22 4.98 4.72 -5.19 -0.02 4.95 16 12 C -0.53 -12.50 6.57 -34.44 -0.23 -12.73 16 13 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.08 1.82 4.85 -17.82 -0.09 1.73 16 15 N -0.87 -21.19 13.29 55.43 0.74 -20.45 16 16 Si 0.89 18.72 29.54 -169.99 -5.02 13.70 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 C 0.12 2.25 5.10 -4.04 -0.02 2.23 16 21 C -0.13 -2.06 5.01 -26.73 -0.13 -2.19 16 22 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 23 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 24 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 25 C -0.06 -1.30 9.80 -40.44 -0.40 -1.70 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.15 2.42 8.06 -52.49 -0.42 1.99 16 32 H 0.04 1.01 4.96 -26.05 -0.13 0.88 16 33 H 0.05 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.07 1.32 7.51 -51.93 -0.39 0.93 16 36 H 0.08 1.39 6.50 -51.93 -0.34 1.05 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.13 2.58 8.06 -52.48 -0.42 2.15 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -26.82 385.06 -8.11 -34.93 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.50 Total: 2.90 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 0.27 Total: -10.71 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.30 Total: -33.53 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.29 Total: -20.06 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 8.65 SS G_CDS: -1.67 Total: 6.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -26.82 -8.11 -34.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597148560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.030 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds