Wall clock time and date at job start Tue Mar 31 2020 14:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00203 * 2 1 4 4 C 1.50694 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.33822 * 122.44856 * 269.97634 * 4 3 2 6 6 S 1.70616 * 110.95252 * 179.78168 * 5 4 3 7 7 C 1.75832 * 91.56544 * 0.30510 * 6 5 4 8 8 C 1.46582 * 125.45797 * 179.97438 * 7 6 5 9 9 O 1.21699 * 119.99895 * 186.48434 * 8 7 6 10 10 N 1.34773 * 120.00160 * 6.48321 * 8 7 6 11 11 C 1.46497 * 119.99889 * 5.69701 * 10 8 7 12 12 C 1.50709 * 109.46984 * 274.84582 * 11 10 8 13 13 H 1.07995 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99934 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47238 * 59.99510 * 16 14 12 18 18 H 1.48498 * 109.46910 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47069 * 299.99507 * 16 14 12 20 20 C 1.46503 * 120.00026 * 185.69868 * 10 8 7 21 21 C 1.53001 * 109.46832 * 269.99831 * 20 10 8 22 22 C 1.52998 * 109.46947 * 179.97438 * 21 20 10 23 23 C 1.52999 * 109.47306 * 65.00082 * 22 21 20 24 24 C 1.53002 * 109.47170 * 184.99806 * 22 21 20 25 25 C 1.36648 * 109.08041 * 359.69995 * 7 6 5 26 26 H 1.08999 * 109.47170 * 59.99954 * 1 2 3 27 27 H 1.09003 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47150 * 300.00526 * 1 2 3 29 29 H 1.09002 * 109.46979 * 59.99728 * 3 2 1 30 30 H 1.09003 * 109.46530 * 300.00013 * 3 2 1 31 31 H 1.07993 * 124.52403 * 0.02562 * 5 4 3 32 32 H 1.08996 * 109.47354 * 34.84145 * 11 10 8 33 33 H 1.08999 * 109.47101 * 154.84677 * 11 10 8 34 34 H 0.96996 * 119.99917 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46832 * 29.99727 * 20 10 8 36 36 H 1.08996 * 109.47340 * 150.00060 * 20 10 8 37 37 H 1.08999 * 109.46936 * 300.00225 * 21 20 10 38 38 H 1.08996 * 109.46971 * 60.00003 * 21 20 10 39 39 H 1.09004 * 109.47490 * 304.99902 * 22 21 20 40 40 H 1.09004 * 109.46993 * 59.99516 * 23 22 21 41 41 H 1.08999 * 109.47268 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47130 * 299.99805 * 23 22 21 43 43 H 1.09000 * 109.46559 * 60.00319 * 24 22 21 44 44 H 1.08999 * 109.47062 * 179.97438 * 24 22 21 45 45 H 1.08996 * 109.47293 * 300.00425 * 24 22 21 46 46 H 1.08003 * 123.34721 * 180.25047 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2279 1.1305 1.1302 6 16 5.8942 0.9922 0.7909 7 6 5.5932 1.0219 -0.9412 8 6 6.6197 0.9394 -1.9843 9 8 6.3133 1.0875 -3.1527 10 7 7.9030 0.6997 -1.6493 11 6 8.2531 0.3979 -0.2592 12 6 8.4500 1.6849 0.5000 13 1 8.3271 2.6326 -0.0029 14 6 8.7880 1.6522 1.8362 15 7 8.9382 0.4979 2.4485 16 14 9.0314 3.2473 2.7774 17 1 7.7749 4.0381 2.7444 18 1 9.3864 2.9413 4.1865 19 1 10.1258 4.0304 2.1496 20 6 8.9478 0.7409 -2.6755 21 6 9.1156 -0.6508 -3.2886 22 6 10.2063 -0.6076 -4.3606 23 6 11.5521 -0.2885 -3.7065 24 6 10.2885 -1.9661 -5.0597 25 6 4.2483 1.1280 -1.1591 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8063 1.1640 2.1239 32 1 7.4493 -0.1763 0.2015 33 1 9.1750 -0.1831 -0.2346 34 1 9.1757 0.4749 3.3887 35 1 8.6646 1.4493 -3.4541 36 1 9.8887 1.0547 -2.2236 37 1 9.3987 -1.3590 -2.5099 38 1 8.1747 -0.9645 -3.7405 39 1 9.9662 0.1637 -5.0925 40 1 11.7923 -1.0598 -2.9746 41 1 12.3291 -0.2573 -4.4703 42 1 11.4937 0.6793 -3.2085 43 1 9.3297 -2.1934 -5.5257 44 1 11.0652 -1.9352 -5.8237 45 1 10.5286 -2.7374 -4.3278 46 1 3.8074 1.1620 -2.1444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597148560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:56 Heat of formation + Delta-G solvation = -79.979155 kcal Electronic energy + Delta-G solvation = -25843.404236 eV Core-core repulsion = 22244.857128 eV Total energy + Delta-G solvation = -3598.547109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88631 -39.52971 -38.02724 -37.44778 -36.49581 -34.57963 -31.86578 -30.42575 -28.90245 -28.47354 -27.97406 -26.58973 -25.70773 -25.07727 -23.42545 -20.89320 -20.64050 -19.80597 -18.84235 -18.50700 -17.35948 -17.27260 -17.09263 -16.51277 -16.37869 -16.11814 -15.85825 -15.75412 -15.13541 -14.71378 -14.43366 -14.34262 -14.22835 -13.82072 -13.71985 -13.54321 -13.49839 -13.11107 -12.98031 -12.87752 -12.78983 -12.68599 -12.58248 -12.26939 -12.18635 -12.08314 -11.89288 -11.66243 -11.55662 -11.41544 -10.99429 -10.85919 -10.59953 -10.51803 -9.77108 -9.38331 -9.12771 -8.24447 -6.31218 -0.19988 0.98438 1.36682 1.40776 1.48244 1.52747 1.54872 2.22681 2.27755 2.43674 3.08578 3.21972 3.74962 3.93415 3.99794 4.08516 4.11370 4.20552 4.35458 4.39103 4.49516 4.57289 4.58097 4.59363 4.67163 4.71098 4.71918 4.81181 4.84384 4.86228 4.92356 5.04203 5.07323 5.10088 5.14490 5.15827 5.32600 5.48620 5.50315 5.52984 5.58834 5.63071 5.78878 5.89870 6.27806 6.45120 6.72272 7.20573 7.31814 8.78683 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.004865 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.109098 B = 5754.249606 C = 8291.118003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.416 6.416 3 C 0.128 3.872 4 C -0.146 4.146 5 C -0.306 4.306 6 S 0.384 5.616 7 C -0.322 4.322 8 C 0.583 3.417 9 O -0.590 6.590 10 N -0.598 5.598 11 C 0.234 3.766 12 C -0.538 4.538 13 H 0.058 0.942 14 C 0.053 3.947 15 N -0.893 5.893 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.272 1.272 20 C 0.121 3.879 21 C -0.118 4.118 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.062 4.062 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.171 0.829 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.275 0.725 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -0.874 -3.963 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.336 6.336 3 C 0.050 3.950 4 C -0.159 4.159 5 C -0.444 4.444 6 S 0.663 5.337 7 C -0.443 4.443 8 C 0.373 3.627 9 O -0.475 6.475 10 N -0.326 5.326 11 C 0.111 3.889 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.153 4.153 15 N -0.529 5.529 16 Si 0.758 3.242 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.197 1.197 20 C -0.001 4.001 21 C -0.157 4.157 22 C -0.109 4.109 23 C -0.204 4.204 24 C -0.199 4.199 25 C -0.097 4.097 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.189 0.811 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.899 -1.196 -3.398 5.308 hybrid contribution -1.371 1.061 -0.147 1.740 sum -5.270 -0.135 -3.545 6.353 Atomic orbital electron populations 1.22943 0.79471 1.03745 1.01024 1.87953 1.21463 1.28569 1.95584 1.21033 0.87781 0.84584 1.01562 1.18369 0.96313 1.09757 0.91465 1.26937 1.07202 1.06897 1.03353 1.86375 0.94024 1.58614 0.94691 1.24727 0.97892 1.21683 1.00010 1.17268 0.82426 0.76058 0.86970 1.90657 1.82058 1.54856 1.19939 1.48106 1.06040 1.67496 1.11003 1.19475 0.96633 0.96592 0.76199 1.21448 1.48421 0.92866 0.95444 0.92387 1.25371 0.93520 0.98759 0.97644 1.69962 1.45101 1.25707 1.12154 0.85963 0.79379 0.80758 0.78149 1.19165 1.20125 1.19685 1.21541 0.90454 0.97945 0.90161 1.21902 0.98873 0.96494 0.98417 1.21036 0.94629 0.98818 0.96409 1.21879 0.96205 1.01493 1.00800 1.21794 1.01847 0.95893 1.00366 1.20429 0.90931 0.98833 0.99553 0.93031 0.88739 0.92828 0.91109 0.91631 0.81147 0.94538 0.94180 0.91582 0.91631 0.89572 0.92355 0.93606 0.91117 0.92861 0.91161 0.92979 0.93212 0.91090 0.92716 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -12.26 10.69 -148.98 -1.59 -13.85 16 3 C 0.13 3.60 6.18 71.23 0.44 4.04 16 4 C -0.15 -5.20 5.41 -21.05 -0.11 -5.31 16 5 C -0.31 -10.97 10.67 66.82 0.71 -10.26 16 6 S 0.38 15.99 15.51 -56.49 -0.88 15.11 16 7 C -0.32 -14.11 6.19 24.08 0.15 -13.97 16 8 C 0.58 27.05 7.58 86.42 0.66 27.71 16 9 O -0.59 -29.14 16.49 -4.35 -0.07 -29.21 16 10 N -0.60 -26.09 2.47 -830.98 -2.05 -28.14 16 11 C 0.23 10.74 4.72 85.64 0.40 11.15 16 12 C -0.54 -25.65 6.57 25.60 0.17 -25.48 16 13 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.05 2.47 4.85 84.65 0.41 2.88 16 15 N -0.89 -43.63 13.29 21.45 0.28 -43.34 16 16 Si 0.93 37.96 29.54 68.60 2.03 39.98 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 C 0.12 4.51 5.10 86.38 0.44 4.95 16 21 C -0.12 -3.85 5.01 30.59 0.15 -3.69 16 22 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 23 C -0.15 -3.40 8.95 71.98 0.64 -2.76 16 24 C -0.14 -3.09 9.19 71.98 0.66 -2.42 16 25 C -0.06 -2.49 9.80 21.72 0.21 -2.27 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 30 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.17 5.21 8.06 -2.91 -0.02 5.18 16 32 H 0.04 1.78 4.96 -18.85 -0.09 1.69 16 33 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 35 H 0.07 2.50 7.51 -2.39 -0.02 2.48 16 36 H 0.09 3.07 6.50 -2.39 -0.02 3.05 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.28 6.57 -2.39 -0.02 1.27 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.14 5.28 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -57.26 385.06 4.74 -52.51 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.87 Total: 22.98 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 6.16 Total: -16.04 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.77 Total: -71.49 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.66 Total: -43.06 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 15.99 SS G_CDS: -0.88 Total: 15.11 kcal Total: -57.26 4.74 -52.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597148560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.466 kcal (2) G-P(sol) polarization free energy of solvation -57.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds