Wall clock time and date at job start Tue Mar 31 2020 14:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99887 * 2 1 4 4 C 1.50701 * 109.46775 * 180.02562 * 3 2 1 5 5 C 1.33826 * 122.44559 * 269.97553 * 4 3 2 6 6 S 1.70608 * 110.95104 * 179.78509 * 5 4 3 7 7 C 1.75830 * 91.56572 * 0.30618 * 6 5 4 8 8 C 1.46584 * 125.45675 * 179.97438 * 7 6 5 9 9 O 1.21703 * 119.99934 * 186.66810 * 8 7 6 10 10 N 1.34780 * 120.00124 * 6.67793 * 8 7 6 11 11 C 1.46501 * 119.99928 * 184.09417 * 10 8 7 12 12 C 1.50696 * 109.46875 * 269.99398 * 11 10 8 13 13 H 1.07996 * 120.00298 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99730 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00076 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99940 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47479 * 89.99895 * 16 14 12 18 18 H 1.48501 * 109.47450 * 209.99883 * 16 14 12 19 19 H 1.48506 * 109.47430 * 329.99806 * 16 14 12 20 20 C 1.46496 * 120.00060 * 4.08641 * 10 8 7 21 21 C 1.53002 * 109.47577 * 263.22076 * 20 10 8 22 22 C 1.52995 * 109.47037 * 53.80672 * 21 20 10 23 23 C 1.52991 * 109.47143 * 173.80829 * 21 20 10 24 24 C 1.52998 * 109.46692 * 293.80930 * 21 20 10 25 25 C 1.36643 * 109.08298 * 359.69710 * 7 6 5 26 26 H 1.08998 * 109.47037 * 300.00581 * 1 2 3 27 27 H 1.09001 * 109.46624 * 59.99750 * 1 2 3 28 28 H 1.08992 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46999 * 60.00092 * 3 2 1 30 30 H 1.09001 * 109.47024 * 299.99447 * 3 2 1 31 31 H 1.08001 * 124.51938 * 0.02562 * 5 4 3 32 32 H 1.09003 * 109.46866 * 29.99843 * 11 10 8 33 33 H 1.08999 * 109.46956 * 149.99830 * 11 10 8 34 34 H 0.97004 * 120.00289 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47179 * 23.22324 * 20 10 8 36 36 H 1.09001 * 109.46997 * 143.21537 * 20 10 8 37 37 H 1.09010 * 109.47148 * 78.52645 * 22 21 20 38 38 H 1.08995 * 109.47760 * 198.52787 * 22 21 20 39 39 H 1.09007 * 109.47379 * 318.53092 * 22 21 20 40 40 H 1.09002 * 109.47720 * 60.00045 * 23 21 20 41 41 H 1.09007 * 109.47381 * 180.02562 * 23 21 20 42 42 H 1.09001 * 109.47226 * 299.99975 * 23 21 20 43 43 H 1.09002 * 109.47051 * 60.00142 * 24 21 20 44 44 H 1.09007 * 109.46485 * 179.97438 * 24 21 20 45 45 H 1.08994 * 109.47130 * 299.99550 * 24 21 20 46 46 H 1.07998 * 123.34946 * 180.25122 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2288 1.1300 1.1284 6 16 5.8948 0.9919 0.7877 7 6 5.5924 1.0223 -0.9441 8 6 6.6182 0.9403 -1.9880 9 8 6.3114 1.0921 -3.1559 10 7 7.9011 0.6965 -1.6544 11 6 8.9404 0.7034 -2.6870 12 6 9.0896 -0.6829 -3.2587 13 1 8.4718 -1.4884 -2.8902 14 6 10.0149 -0.9229 -4.2524 15 7 10.7668 0.0581 -4.7015 16 14 10.1993 -2.6411 -4.9616 17 1 9.2834 -2.7996 -6.1197 18 1 11.6010 -2.8447 -5.4077 19 1 9.8602 -3.6451 -3.9213 20 6 8.2563 0.4248 -0.2594 21 6 8.7523 1.7128 0.4008 22 6 7.7075 2.8152 0.2168 23 6 8.9766 1.4668 1.8941 24 6 10.0688 2.1443 -0.2484 25 6 4.2475 1.1284 -1.1609 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8079 1.1633 2.1225 32 1 8.6593 1.3956 -3.4807 33 1 9.8867 1.0190 -2.2478 34 1 11.4176 -0.1106 -5.4009 35 1 7.3796 0.0575 0.2739 36 1 9.0441 -0.3278 -0.2251 37 1 6.8994 2.6734 0.9346 38 1 8.1723 3.7874 0.3805 39 1 7.3062 2.7702 -0.7957 40 1 9.7210 0.6814 2.0253 41 1 9.3295 2.3846 2.3646 42 1 8.0387 1.1593 2.3566 43 1 9.9090 2.3196 -1.3123 44 1 10.4219 3.0622 0.2217 45 1 10.8131 1.3590 -0.1173 46 1 3.8058 1.1628 -2.1459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597160737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:58 Heat of formation + Delta-G solvation = -54.533287 kcal Electronic energy + Delta-G solvation = -26599.325418 eV Core-core repulsion = 23001.881725 eV Total energy + Delta-G solvation = -3597.443693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26930 -39.75178 -38.60254 -37.65788 -35.71863 -34.41187 -31.88390 -29.84926 -28.58457 -28.38236 -28.11410 -27.21689 -26.63255 -25.79387 -23.74469 -21.04965 -20.26343 -19.80681 -18.88278 -18.62009 -17.40890 -17.32120 -17.12705 -16.69569 -16.63439 -16.19615 -16.00981 -15.55077 -15.29890 -14.96532 -14.77188 -14.34784 -13.99186 -13.91908 -13.74283 -13.66438 -13.31252 -13.03105 -12.99300 -12.84528 -12.83534 -12.64734 -12.53755 -12.50946 -12.29271 -12.17065 -12.07222 -11.85478 -11.72744 -11.52223 -10.95797 -10.87485 -10.61126 -10.60173 -9.85863 -9.40973 -8.97079 -8.22778 -6.36568 -0.42520 0.52197 0.99324 1.30429 1.34712 1.38111 1.47408 2.13743 2.29626 2.40638 3.06528 3.16904 3.55792 3.73833 3.77716 4.02043 4.05920 4.12671 4.31394 4.33240 4.44396 4.51195 4.55092 4.58012 4.64429 4.68788 4.78136 4.83124 4.87003 4.87710 4.93845 5.04253 5.07979 5.14208 5.19846 5.21089 5.33270 5.37589 5.41920 5.44857 5.54384 5.58823 5.80514 6.06961 6.24799 6.61677 6.71389 7.22177 7.37681 8.83856 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.004286 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.812934 B = 6531.507020 C = 8090.541183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.123 3.877 4 C -0.141 4.141 5 C -0.254 4.254 6 S 0.338 5.662 7 C -0.311 4.311 8 C 0.570 3.430 9 O -0.593 6.593 10 N -0.589 5.589 11 C 0.259 3.741 12 C -0.547 4.547 13 H 0.047 0.953 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.283 1.283 18 H -0.271 1.271 19 H -0.264 1.264 20 C 0.102 3.898 21 C -0.082 4.082 22 C -0.167 4.167 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.054 4.054 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.197 0.803 32 H -0.009 1.009 33 H 0.056 0.944 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 4.371 20.940 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.045 3.955 4 C -0.153 4.153 5 C -0.391 4.391 6 S 0.611 5.389 7 C -0.430 4.430 8 C 0.359 3.641 9 O -0.476 6.476 10 N -0.317 5.317 11 C 0.138 3.862 12 C -0.585 4.585 13 H 0.065 0.935 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.787 3.213 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.188 1.188 20 C -0.023 4.023 21 C -0.083 4.083 22 C -0.224 4.224 23 C -0.192 4.192 24 C -0.202 4.202 25 C -0.088 4.088 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.215 0.785 32 H 0.010 0.990 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.269 4.203 21.151 24.331 hybrid contribution -1.284 -0.478 -2.453 2.810 sum -12.553 3.725 18.697 22.826 Atomic orbital electron populations 1.22933 0.79394 1.03704 1.01093 1.87946 1.21473 1.28546 1.95623 1.21093 0.87581 0.84716 1.02074 1.18373 0.96571 1.09008 0.91361 1.26503 1.03742 1.04980 1.03872 1.83469 0.98965 1.62154 0.94325 1.24571 0.97575 1.21638 0.99266 1.17559 0.82456 0.76713 0.87323 1.90742 1.81540 1.53957 1.21388 1.47992 1.06761 1.67416 1.09580 1.19068 0.86041 0.95553 0.85509 1.21722 1.19891 0.95665 1.21236 0.93457 1.25761 0.95106 1.01425 0.96356 1.70031 1.23674 1.33458 1.29239 0.85492 0.77616 0.79573 0.78599 1.20950 1.19559 1.18776 1.22327 1.00769 0.98955 0.80264 1.20998 0.95868 0.93835 0.97615 1.22710 0.99380 0.99277 1.01082 1.21876 1.02771 1.03452 0.91068 1.22047 0.96294 1.01818 1.00072 1.20585 0.91315 0.96857 1.00071 0.92232 0.93488 0.88956 0.89762 0.92270 0.78542 0.99045 0.92628 0.92350 0.89725 0.89148 0.88901 0.90611 0.95459 0.91402 0.90111 0.91019 0.94659 0.90724 0.92548 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.83 10.69 -148.98 -1.59 -11.42 16 3 C 0.12 2.55 6.18 71.24 0.44 2.99 16 4 C -0.14 -3.61 5.41 -21.05 -0.11 -3.72 16 5 C -0.25 -5.20 10.67 66.82 0.71 -4.49 16 6 S 0.34 7.82 11.96 -56.49 -0.68 7.14 16 7 C -0.31 -11.19 5.34 24.08 0.13 -11.06 16 8 C 0.57 26.97 6.14 86.42 0.53 27.50 16 9 O -0.59 -34.30 16.47 -4.36 -0.07 -34.37 16 10 N -0.59 -26.57 1.92 -830.98 -1.60 -28.17 16 11 C 0.26 14.22 4.31 85.63 0.37 14.59 16 12 C -0.55 -32.51 9.39 25.60 0.24 -32.27 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 14 C 0.01 0.75 5.46 84.66 0.46 1.21 16 15 N -0.92 -56.33 13.29 21.45 0.28 -56.05 16 16 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 17 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.10 3.35 4.37 86.38 0.38 3.73 16 21 C -0.08 -2.13 0.59 -52.19 -0.03 -2.16 16 22 C -0.17 -4.32 7.11 71.98 0.51 -3.80 16 23 C -0.13 -2.25 8.30 71.98 0.60 -1.66 16 24 C -0.15 -4.33 7.36 71.98 0.53 -3.80 16 25 C -0.05 -1.82 9.80 21.71 0.21 -1.61 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 32 H -0.01 -0.55 7.48 -2.39 -0.02 -0.57 16 33 H 0.06 2.98 5.15 -2.39 -0.01 2.96 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.09 2.44 3.65 -23.43 -0.09 2.36 16 36 H 0.09 3.07 8.12 -2.39 -0.02 3.05 16 37 H 0.09 1.93 4.59 -20.67 -0.09 1.83 16 38 H 0.08 1.72 8.00 -2.39 -0.02 1.70 16 39 H 0.03 0.92 5.00 -2.38 -0.01 0.91 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 0.95 6.78 -2.39 -0.02 0.94 16 43 H 0.03 1.34 5.33 -2.39 -0.01 1.33 16 44 H 0.07 1.81 8.13 -2.38 -0.02 1.79 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -79.59 366.21 5.41 -74.18 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.82 Total: 13.53 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 6.22 Total: -12.93 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.31 Total: -84.22 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.66 Total: -45.79 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 7.82 SS G_CDS: -0.68 Total: 7.14 kcal Total: -79.59 5.41 -74.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.644 kcal (2) G-P(sol) polarization free energy of solvation -79.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds