Wall clock time and date at job start Tue Mar 31 2020 14:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76195 * 99.99974 * 2 1 4 4 C 1.36522 * 125.61853 * 174.96992 * 3 2 1 5 5 C 1.39652 * 107.19629 * 179.73387 * 4 3 2 6 6 C 1.50701 * 126.62992 * 180.02562 * 5 4 3 7 7 C 1.37996 * 106.74727 * 359.97438 * 5 4 3 8 8 C 1.41623 * 126.01348 * 179.97438 * 7 5 4 9 9 O 1.21801 * 120.00192 * 4.94894 * 8 7 5 10 10 N 1.34777 * 120.00162 * 184.94882 * 8 7 5 11 11 C 1.46505 * 120.00080 * 4.90918 * 10 8 7 12 12 C 1.50702 * 109.47198 * 82.76534 * 11 10 8 13 13 H 1.07996 * 119.99842 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99759 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99764 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47214 * 59.99750 * 16 14 12 18 18 H 1.48500 * 109.47020 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46882 * 299.99892 * 16 14 12 20 20 C 1.46497 * 120.00174 * 184.91030 * 10 8 7 21 21 C 1.53006 * 109.47283 * 92.06583 * 20 10 8 22 22 C 1.53004 * 109.46706 * 64.85885 * 21 20 10 23 23 C 1.52993 * 109.47110 * 184.85701 * 21 20 10 24 24 C 1.52993 * 109.47176 * 304.86015 * 21 20 10 25 25 O 1.34157 * 125.61470 * 354.66402 * 3 2 1 26 26 H 1.08996 * 109.47262 * 64.76681 * 1 2 3 27 27 H 1.09003 * 109.47252 * 184.76773 * 1 2 3 28 28 H 1.09005 * 109.47549 * 304.76541 * 1 2 3 29 29 H 1.08009 * 126.40049 * 359.73759 * 4 3 2 30 30 H 1.09001 * 109.47142 * 90.02046 * 6 5 4 31 31 H 1.08995 * 109.47247 * 210.02708 * 6 5 4 32 32 H 1.09003 * 109.46621 * 330.02605 * 6 5 4 33 33 H 1.08995 * 109.46888 * 202.76826 * 11 10 8 34 34 H 1.09001 * 109.46681 * 322.76750 * 11 10 8 35 35 H 0.97001 * 119.99691 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47299 * 212.06577 * 20 10 8 37 37 H 1.08997 * 109.47229 * 332.06764 * 20 10 8 38 38 H 1.09000 * 109.46920 * 60.00333 * 22 21 20 39 39 H 1.08998 * 109.46988 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47432 * 299.99832 * 22 21 20 41 41 H 1.09007 * 109.47138 * 64.94085 * 23 21 20 42 42 H 1.08995 * 109.47261 * 184.93846 * 23 21 20 43 43 H 1.09002 * 109.47841 * 304.94105 * 23 21 20 44 44 H 1.09005 * 109.47042 * 65.15692 * 24 21 20 45 45 H 1.08991 * 109.47444 * 185.15735 * 24 21 20 46 46 H 1.09001 * 109.47441 * 305.16242 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3427 2.3262 0.0973 5 6 3.1404 3.7073 0.0524 6 6 4.2020 4.7744 0.1253 7 6 1.7805 3.9061 -0.0727 8 6 1.1263 5.1595 -0.1548 9 8 1.7803 6.1856 -0.2073 10 7 -0.2201 5.2168 -0.1749 11 6 -1.0081 3.9936 -0.0037 12 6 -1.1396 3.6823 1.4649 13 1 -0.6824 4.3309 2.1975 14 6 -1.8436 2.5694 1.8733 15 7 -2.4000 1.7793 0.9812 16 14 -2.0073 2.1838 3.6938 17 1 -2.6889 3.3111 4.3792 18 1 -2.8048 0.9433 3.8672 19 1 -0.6575 1.9903 4.2820 20 6 -0.8957 6.5023 -0.3680 21 6 -1.1647 6.7183 -1.8587 22 6 -2.1509 5.6602 -2.3575 23 6 -1.7597 8.1114 -2.0729 24 6 0.1476 6.5991 -2.6362 25 8 1.1821 2.6931 -0.1014 26 1 -0.3633 0.4381 -0.9296 27 1 -0.3634 -1.0241 0.0854 28 1 -0.3634 0.5860 0.8442 29 1 4.2923 1.8202 0.1913 30 1 4.5480 5.0119 -0.8807 31 1 3.7861 5.6697 0.5874 32 1 5.0397 4.4132 0.7218 33 1 -1.9988 4.1364 -0.4350 34 1 -0.5083 3.1661 -0.5072 35 1 -2.8956 0.9965 1.2686 36 1 -1.8408 6.5013 0.1752 37 1 -0.2619 7.3058 0.0069 38 1 -3.0858 5.7452 -1.8036 39 1 -2.3429 5.8143 -3.4193 40 1 -1.7270 4.6677 -2.2049 41 1 -1.0232 8.8670 -1.7994 42 1 -2.0325 8.2327 -3.1212 43 1 -2.6472 8.2271 -1.4508 44 1 0.5246 5.5793 -2.5584 45 1 -0.0274 6.8428 -3.6840 46 1 0.8807 7.2901 -2.2199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:45 Heat of formation + Delta-G solvation = -27.034225 kcal Electronic energy + Delta-G solvation = -27804.670388 eV Core-core repulsion = 24208.419144 eV Total energy + Delta-G solvation = -3596.251244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03449 -39.32000 -36.79003 -34.60189 -33.39676 -32.43390 -30.05610 -28.43418 -27.77281 -27.55791 -26.96379 -26.74105 -25.33806 -23.22610 -22.04781 -20.75855 -18.98929 -18.28787 -17.24323 -16.76772 -16.37637 -15.78507 -15.43307 -14.77639 -14.66252 -14.46832 -14.04136 -13.46115 -13.29184 -13.25468 -12.98819 -12.84536 -12.69567 -12.56603 -12.51315 -12.38674 -12.04728 -11.89106 -11.84067 -11.34046 -11.26158 -11.23476 -11.12987 -11.01568 -10.84976 -10.55660 -10.48535 -10.36790 -10.28522 -10.06896 -9.74369 -9.49327 -9.27025 -8.75383 -8.50793 -7.72679 -6.94287 -6.21493 -4.25776 1.51050 1.68367 2.37718 2.72912 3.20222 3.24093 3.29668 3.77620 3.93464 4.16486 4.31896 5.10425 5.16259 5.16532 5.21133 5.30281 5.44975 5.61408 5.65399 5.83388 5.85135 5.88523 5.90060 5.94996 6.04927 6.08076 6.11412 6.17613 6.21282 6.25711 6.28649 6.36465 6.46011 6.52613 6.53763 6.64225 6.65927 6.75890 6.83035 6.87829 7.22385 7.40070 7.56692 7.73857 8.04240 8.24625 8.75420 8.92044 9.38497 10.83429 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.006646 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.867680 B = 4212.346671 C = 5722.454991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.054 6.054 3 C -0.002 4.002 4 C -0.204 4.204 5 C -0.091 4.091 6 C -0.084 4.084 7 C -0.062 4.062 8 C 0.598 3.402 9 O -0.555 6.555 10 N -0.585 5.585 11 C 0.228 3.772 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.068 3.932 15 N -0.888 5.888 16 Si 0.884 3.116 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.129 3.871 21 C -0.084 4.084 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.132 4.132 25 O -0.102 6.102 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 1.673 -5.281 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.184 5.816 3 C -0.167 4.167 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.140 4.140 7 C -0.119 4.119 8 C 0.389 3.611 9 O -0.438 6.438 10 N -0.314 5.314 11 C 0.109 3.891 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.528 5.528 16 Si 0.711 3.289 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.201 1.201 20 C 0.006 3.994 21 C -0.085 4.085 22 C -0.199 4.199 23 C -0.193 4.193 24 C -0.190 4.190 25 O 0.003 5.997 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.185 0.947 -5.347 7.508 hybrid contribution -1.070 0.413 1.171 1.640 sum 4.115 1.360 -4.176 6.018 Atomic orbital electron populations 1.23822 0.90871 1.06520 1.09628 1.85365 1.10554 0.92957 1.92732 1.24729 0.90804 0.94422 1.06737 1.21163 0.96933 0.92846 1.12173 1.20606 0.93208 0.94492 1.01235 1.20300 0.95096 0.96653 1.01979 1.21110 0.91665 0.84827 1.14300 1.15377 0.82471 0.85808 0.77471 1.90746 1.65613 1.33474 1.54017 1.48120 1.05149 1.10163 1.67931 1.19851 0.91591 0.80426 0.97226 1.21444 1.33402 1.09487 0.91902 0.92548 1.24798 0.95271 0.95884 0.97390 1.69922 1.34759 1.15123 1.32956 0.86766 0.78435 0.77904 0.85771 1.20126 1.20994 1.20105 1.21414 0.97682 0.86165 0.94184 1.20950 0.95985 0.95391 0.96210 1.21985 0.98707 0.99529 0.99720 1.21780 1.00480 0.95860 1.01193 1.21809 0.96607 1.02112 0.98441 1.85015 1.32558 1.13259 1.68882 0.89169 0.88710 0.86191 0.83273 0.91406 0.89747 0.92182 0.93468 0.92935 0.92647 0.90572 0.90576 0.92702 0.93613 0.91525 0.92745 0.92877 0.92713 0.93154 0.93788 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.99 101.05 1.01 -1.45 16 2 S -0.05 -0.88 22.90 -107.50 -2.46 -3.35 16 3 C 0.00 -0.04 7.28 30.11 0.22 0.18 16 4 C -0.20 -3.60 10.77 -39.67 -0.43 -4.03 16 5 C -0.09 -1.71 6.21 -104.18 -0.65 -2.36 16 6 C -0.08 -1.32 9.73 36.01 0.35 -0.97 16 7 C -0.06 -1.33 6.61 -38.38 -0.25 -1.58 16 8 C 0.60 12.87 5.75 -14.97 -0.09 12.79 16 9 O -0.55 -12.01 12.85 5.10 0.07 -11.94 16 10 N -0.59 -12.22 2.00 -178.46 -0.36 -12.58 16 11 C 0.23 5.25 3.61 -5.19 -0.02 5.23 16 12 C -0.52 -13.29 8.75 -34.44 -0.30 -13.59 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.71 4.91 -17.82 -0.09 1.62 16 15 N -0.89 -22.06 11.82 55.43 0.66 -21.40 16 16 Si 0.88 20.16 29.54 -169.99 -5.02 15.14 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.13 2.33 4.59 -4.04 -0.02 2.31 16 21 C -0.08 -1.31 0.85 -154.51 -0.13 -1.44 16 22 C -0.14 -2.24 7.40 37.16 0.27 -1.96 16 23 C -0.14 -1.72 8.47 37.15 0.31 -1.41 16 24 C -0.13 -2.12 7.21 37.15 0.27 -1.86 16 25 O -0.10 -2.22 6.11 3.32 0.02 -2.20 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.40 8.14 -51.91 -0.42 0.98 16 28 H 0.12 2.52 6.08 -51.91 -0.32 2.20 16 29 H 0.15 2.19 8.06 -52.48 -0.42 1.76 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.46 6.54 -51.93 -0.34 1.12 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.12 6.09 -51.93 -0.32 0.80 16 34 H 0.05 1.29 5.04 -51.96 -0.26 1.03 16 35 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 36 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 37 H 0.08 1.39 7.30 -51.93 -0.38 1.01 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.20 5.87 -51.93 -0.30 0.90 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.91 6.77 -51.93 -0.35 0.56 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -26.15 373.41 -8.27 -34.42 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.27 Total: 4.80 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.46 Total: -8.51 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.30 Total: -33.98 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.46 Total: -3.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -26.15 -8.27 -34.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.385 kcal (2) G-P(sol) polarization free energy of solvation -26.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds