Wall clock time and date at job start Tue Mar 31 2020 14:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76195 * 99.99974 * 2 1 4 4 C 1.36522 * 125.61853 * 174.96992 * 3 2 1 5 5 C 1.39652 * 107.19629 * 179.73387 * 4 3 2 6 6 C 1.50701 * 126.62992 * 180.02562 * 5 4 3 7 7 C 1.37996 * 106.74727 * 359.97438 * 5 4 3 8 8 C 1.41623 * 126.01348 * 179.97438 * 7 5 4 9 9 O 1.21801 * 120.00192 * 4.94894 * 8 7 5 10 10 N 1.34777 * 120.00162 * 184.94882 * 8 7 5 11 11 C 1.46505 * 120.00080 * 4.90918 * 10 8 7 12 12 C 1.50702 * 109.47198 * 82.76534 * 11 10 8 13 13 H 1.07996 * 119.99842 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99759 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99764 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47214 * 59.99750 * 16 14 12 18 18 H 1.48500 * 109.47020 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46882 * 299.99892 * 16 14 12 20 20 C 1.46497 * 120.00174 * 184.91030 * 10 8 7 21 21 C 1.53006 * 109.47283 * 92.06583 * 20 10 8 22 22 C 1.53004 * 109.46706 * 64.85885 * 21 20 10 23 23 C 1.52993 * 109.47110 * 184.85701 * 21 20 10 24 24 C 1.52993 * 109.47176 * 304.86015 * 21 20 10 25 25 O 1.34157 * 125.61470 * 354.66402 * 3 2 1 26 26 H 1.08996 * 109.47262 * 64.76681 * 1 2 3 27 27 H 1.09003 * 109.47252 * 184.76773 * 1 2 3 28 28 H 1.09005 * 109.47549 * 304.76541 * 1 2 3 29 29 H 1.08009 * 126.40049 * 359.73759 * 4 3 2 30 30 H 1.09001 * 109.47142 * 90.02046 * 6 5 4 31 31 H 1.08995 * 109.47247 * 210.02708 * 6 5 4 32 32 H 1.09003 * 109.46621 * 330.02605 * 6 5 4 33 33 H 1.08995 * 109.46888 * 202.76826 * 11 10 8 34 34 H 1.09001 * 109.46681 * 322.76750 * 11 10 8 35 35 H 0.97001 * 119.99691 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47299 * 212.06577 * 20 10 8 37 37 H 1.08997 * 109.47229 * 332.06764 * 20 10 8 38 38 H 1.09000 * 109.46920 * 60.00333 * 22 21 20 39 39 H 1.08998 * 109.46988 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47432 * 299.99832 * 22 21 20 41 41 H 1.09007 * 109.47138 * 64.94085 * 23 21 20 42 42 H 1.08995 * 109.47261 * 184.93846 * 23 21 20 43 43 H 1.09002 * 109.47841 * 304.94105 * 23 21 20 44 44 H 1.09005 * 109.47042 * 65.15692 * 24 21 20 45 45 H 1.08991 * 109.47444 * 185.15735 * 24 21 20 46 46 H 1.09001 * 109.47441 * 305.16242 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3427 2.3262 0.0973 5 6 3.1404 3.7073 0.0524 6 6 4.2020 4.7744 0.1253 7 6 1.7805 3.9061 -0.0727 8 6 1.1263 5.1595 -0.1548 9 8 1.7803 6.1856 -0.2073 10 7 -0.2201 5.2168 -0.1749 11 6 -1.0081 3.9936 -0.0037 12 6 -1.1396 3.6823 1.4649 13 1 -0.6824 4.3309 2.1975 14 6 -1.8436 2.5694 1.8733 15 7 -2.4000 1.7793 0.9812 16 14 -2.0073 2.1838 3.6938 17 1 -2.6889 3.3111 4.3792 18 1 -2.8048 0.9433 3.8672 19 1 -0.6575 1.9903 4.2820 20 6 -0.8957 6.5023 -0.3680 21 6 -1.1647 6.7183 -1.8587 22 6 -2.1509 5.6602 -2.3575 23 6 -1.7597 8.1114 -2.0729 24 6 0.1476 6.5991 -2.6362 25 8 1.1821 2.6931 -0.1014 26 1 -0.3633 0.4381 -0.9296 27 1 -0.3634 -1.0241 0.0854 28 1 -0.3634 0.5860 0.8442 29 1 4.2923 1.8202 0.1913 30 1 4.5480 5.0119 -0.8807 31 1 3.7861 5.6697 0.5874 32 1 5.0397 4.4132 0.7218 33 1 -1.9988 4.1364 -0.4350 34 1 -0.5083 3.1661 -0.5072 35 1 -2.8956 0.9965 1.2686 36 1 -1.8408 6.5013 0.1752 37 1 -0.2619 7.3058 0.0069 38 1 -3.0858 5.7452 -1.8036 39 1 -2.3429 5.8143 -3.4193 40 1 -1.7270 4.6677 -2.2049 41 1 -1.0232 8.8670 -1.7994 42 1 -2.0325 8.2327 -3.1212 43 1 -2.6472 8.2271 -1.4508 44 1 0.5246 5.5793 -2.5584 45 1 -0.0274 6.8428 -3.6840 46 1 0.8807 7.2901 -2.2199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597161007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:45 Heat of formation + Delta-G solvation = -38.139845 kcal Electronic energy + Delta-G solvation = -27805.151964 eV Core-core repulsion = 24208.419144 eV Total energy + Delta-G solvation = -3596.732820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.54201 -40.88326 -38.23967 -36.20758 -34.93795 -34.24752 -31.51288 -29.85164 -29.52216 -28.98000 -28.13673 -28.09946 -26.83136 -24.99992 -23.61257 -22.21864 -20.48955 -19.67140 -18.92140 -18.38705 -18.01474 -17.40126 -17.03141 -16.44423 -16.22648 -16.00913 -15.36908 -14.84979 -14.74399 -14.65018 -14.48408 -14.34318 -14.19873 -14.03898 -13.99467 -13.88529 -13.40835 -13.23051 -13.09413 -13.02698 -12.83571 -12.62382 -12.58681 -12.50330 -12.45492 -12.10089 -12.00622 -11.89708 -11.70317 -11.54639 -11.48079 -10.94884 -10.89935 -10.44161 -10.20596 -9.38104 -8.35682 -8.13901 -6.24933 -0.03651 0.27268 0.96482 1.28708 1.35240 1.38075 1.43737 2.20501 2.32869 2.42464 2.64915 3.12995 3.79258 3.83126 3.88758 3.98867 4.05406 4.25615 4.31156 4.39321 4.51635 4.54483 4.57118 4.70996 4.74553 4.81343 4.83311 4.87874 4.91954 4.95457 4.99732 5.05435 5.06455 5.16938 5.18240 5.20970 5.27437 5.37847 5.46843 5.51268 5.51598 5.73126 5.79382 5.97748 6.13117 6.50939 6.83182 7.24582 7.41967 8.88539 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.006646 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.867680 B = 4212.346671 C = 5722.454991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.004 6.004 3 C -0.027 4.027 4 C -0.198 4.198 5 C -0.085 4.085 6 C -0.080 4.080 7 C -0.108 4.108 8 C 0.594 3.406 9 O -0.565 6.565 10 N -0.588 5.588 11 C 0.250 3.750 12 C -0.540 4.540 13 H 0.033 0.967 14 C 0.043 3.957 15 N -0.893 5.893 16 Si 0.928 3.072 17 H -0.278 1.278 18 H -0.272 1.272 19 H -0.283 1.283 20 C 0.125 3.875 21 C -0.080 4.080 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.123 4.123 25 O -0.125 6.125 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.184 0.816 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.268 0.732 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.022 0.978 45 H 0.067 0.933 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 1.261 -5.685 7.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.234 5.766 3 C -0.191 4.191 4 C -0.225 4.225 5 C -0.089 4.089 6 C -0.136 4.136 7 C -0.164 4.164 8 C 0.385 3.615 9 O -0.450 6.450 10 N -0.317 5.317 11 C 0.130 3.870 12 C -0.578 4.578 13 H 0.052 0.948 14 C -0.158 4.158 15 N -0.532 5.532 16 Si 0.754 3.246 17 H -0.204 1.204 18 H -0.197 1.197 19 H -0.209 1.209 20 C 0.002 3.998 21 C -0.081 4.081 22 C -0.193 4.193 23 C -0.186 4.186 24 C -0.180 4.180 25 O -0.021 6.021 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.202 0.798 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.891 0.542 -5.760 8.257 hybrid contribution -1.234 0.468 1.297 1.851 sum 4.657 1.010 -4.463 6.529 Atomic orbital electron populations 1.23689 0.92290 1.07486 1.07381 1.85089 1.08766 0.90562 1.92226 1.25467 0.91383 0.95670 1.06603 1.21561 0.97703 0.92290 1.10897 1.21104 0.92845 0.95899 0.99041 1.20360 0.94988 0.95063 1.03221 1.21319 0.92946 0.84802 1.17284 1.15509 0.82543 0.86149 0.77279 1.90713 1.65664 1.33799 1.54824 1.48101 1.05145 1.10398 1.68039 1.19423 0.90924 0.80984 0.95629 1.21457 1.34053 1.09780 0.92555 0.94849 1.25216 0.95000 0.95666 0.99944 1.69964 1.34369 1.15036 1.33809 0.86094 0.77895 0.77972 0.82608 1.20403 1.19692 1.20940 1.21586 0.97026 0.84844 0.96318 1.20930 0.95925 0.97255 0.93978 1.21906 0.98354 0.97925 1.01144 1.21730 1.00672 0.93608 1.02621 1.21710 0.96419 1.00042 0.99859 1.84950 1.33662 1.13794 1.69679 0.90483 0.85907 0.89447 0.79845 0.89965 0.91584 0.89089 0.94619 0.94310 0.92272 0.91022 0.90977 0.92783 0.91386 0.94481 0.92246 0.90974 0.91979 0.95925 0.91450 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.99 113.37 1.13 -3.73 16 2 S 0.00 -0.13 22.90 -56.49 -1.29 -1.42 16 3 C -0.03 -1.03 7.28 67.42 0.49 -0.53 16 4 C -0.20 -6.67 10.77 22.21 0.24 -6.43 16 5 C -0.08 -3.13 6.21 -19.58 -0.12 -3.25 16 6 C -0.08 -2.41 9.73 71.24 0.69 -1.71 16 7 C -0.11 -4.71 6.61 23.05 0.15 -4.55 16 8 C 0.59 26.54 5.75 85.08 0.49 27.03 16 9 O -0.57 -25.18 12.85 -4.67 -0.06 -25.24 16 10 N -0.59 -25.70 2.00 -836.69 -1.67 -27.37 16 11 C 0.25 12.07 3.61 85.63 0.31 12.37 16 12 C -0.54 -28.38 8.75 25.60 0.22 -28.15 16 13 H 0.03 1.87 7.81 -2.91 -0.02 1.85 16 14 C 0.04 2.20 4.91 84.65 0.42 2.62 16 15 N -0.89 -44.84 11.82 21.45 0.25 -44.59 16 16 Si 0.93 41.56 29.54 68.60 2.03 43.59 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.12 4.65 4.59 86.38 0.40 5.05 16 21 C -0.08 -2.46 0.85 -52.18 -0.04 -2.50 16 22 C -0.14 -4.27 7.40 71.98 0.53 -3.74 16 23 C -0.13 -3.04 8.47 71.98 0.61 -2.43 16 24 C -0.12 -3.93 7.21 71.98 0.52 -3.41 16 25 O -0.13 -5.58 6.11 -11.05 -0.07 -5.65 16 26 H 0.08 2.86 8.14 -2.40 -0.02 2.84 16 27 H 0.12 3.46 8.14 -2.39 -0.02 3.45 16 28 H 0.09 3.70 6.08 -2.39 -0.01 3.68 16 29 H 0.18 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.26 6.54 -2.39 -0.02 2.24 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.78 6.09 -2.39 -0.01 1.76 16 34 H 0.04 2.02 5.04 -2.88 -0.01 2.01 16 35 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 36 H 0.07 2.68 8.09 -2.38 -0.02 2.66 16 37 H 0.07 2.71 7.30 -2.39 -0.02 2.69 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.37 5.87 -2.39 -0.01 1.36 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.02 0.82 6.77 -2.38 -0.02 0.81 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.76 7.37 -2.39 -0.02 1.74 16 Total: -1.00 -57.71 373.41 6.19 -51.52 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.97 Total: 22.53 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 6.04 Total: -13.38 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.42 Total: -71.96 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.13 Total: -30.89 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.29 Total: -1.42 kcal Total: -57.71 6.19 -51.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.381 kcal (2) G-P(sol) polarization free energy of solvation -57.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds