Wall clock time and date at job start Tue Mar 31 2020 14:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 102.99940 * 2 1 4 4 C 1.35125 * 125.52550 * 180.02562 * 3 2 1 5 5 C 1.47058 * 105.87913 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.14452 * 179.97438 * 5 4 3 7 7 O 1.21619 * 120.00270 * 170.86721 * 6 5 4 8 8 N 1.34783 * 120.00349 * 350.87470 * 6 5 4 9 9 C 1.46497 * 119.99245 * 1.92989 * 8 6 5 10 10 C 1.50697 * 109.47330 * 82.00273 * 9 8 6 11 11 H 1.07998 * 120.00111 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00099 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99800 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47207 * 89.99902 * 14 12 10 16 16 H 1.48500 * 109.47323 * 209.99702 * 14 12 10 17 17 H 1.48503 * 109.47310 * 329.99890 * 14 12 10 18 18 C 1.46498 * 119.99941 * 181.93106 * 8 6 5 19 19 C 1.52994 * 109.47114 * 92.53137 * 18 8 6 20 20 C 1.52997 * 109.47440 * 63.40411 * 19 18 8 21 21 C 1.52997 * 109.47101 * 183.40344 * 19 18 8 22 22 C 1.53003 * 109.47091 * 303.40317 * 19 18 8 23 23 C 1.36330 * 105.71125 * 359.97438 * 5 4 3 24 24 C 1.50699 * 125.71991 * 180.02562 * 23 5 4 25 25 O 1.33951 * 108.56339 * 359.97438 * 23 5 4 26 26 H 1.09001 * 109.47542 * 300.00189 * 1 2 3 27 27 H 1.09006 * 109.47517 * 60.00089 * 1 2 3 28 28 H 1.09005 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.07997 * 127.06321 * 359.70914 * 4 3 2 30 30 H 1.09003 * 109.46585 * 201.99888 * 9 8 6 31 31 H 1.08999 * 109.47328 * 321.99479 * 9 8 6 32 32 H 0.97003 * 119.99787 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.46375 * 212.52987 * 18 8 6 34 34 H 1.08997 * 109.47122 * 332.52534 * 18 8 6 35 35 H 1.09002 * 109.47654 * 59.99919 * 20 19 18 36 36 H 1.09000 * 109.47501 * 180.02562 * 20 19 18 37 37 H 1.09008 * 109.47336 * 300.00224 * 20 19 18 38 38 H 1.09007 * 109.47411 * 60.00134 * 21 19 18 39 39 H 1.09003 * 109.47462 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47353 * 300.00192 * 21 19 18 41 41 H 1.08997 * 109.47213 * 65.22820 * 22 19 18 42 42 H 1.08998 * 109.47151 * 185.22410 * 22 19 18 43 43 H 1.08998 * 109.47168 * 305.22802 * 22 19 18 44 44 H 1.09001 * 109.47162 * 179.97438 * 24 23 5 45 45 H 1.08999 * 109.46830 * 299.94781 * 24 23 5 46 46 H 1.09000 * 109.47362 * 59.94558 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4584 2.2345 -0.0005 5 6 3.2882 3.6952 -0.0009 6 6 4.3521 4.7152 -0.0010 7 8 4.0715 5.8866 -0.1685 8 7 5.6361 4.3497 0.1845 9 6 5.9790 2.9344 0.3438 10 6 6.0739 2.2847 -1.0125 11 1 5.8961 2.8676 -1.9042 12 6 6.3877 0.9460 -1.1153 13 7 6.4700 0.3789 -2.2990 14 14 6.6959 -0.0621 0.4268 15 1 5.4167 -0.6528 0.8960 16 1 7.6610 -1.1490 0.1231 17 1 7.2549 0.8141 1.4875 18 6 6.6887 5.3679 0.2266 19 6 6.9267 5.7956 1.6762 20 6 7.4392 4.6009 2.4829 21 6 7.9650 6.9187 1.7125 22 6 5.6137 6.2951 2.2826 23 6 1.9419 3.9100 -0.0012 24 6 1.2659 5.2568 -0.0022 25 8 1.3208 2.7232 -0.0016 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.3898 1.6879 0.0034 30 1 6.9375 2.8483 0.8558 31 1 5.2072 2.4375 0.9316 32 1 6.6911 -0.5629 -2.3713 33 1 7.6094 4.9558 -0.1865 34 1 6.3816 6.2325 -0.3617 35 1 8.3745 4.2450 2.0510 36 1 7.6083 4.9056 3.5158 37 1 6.6994 3.8007 2.4570 38 1 7.5999 7.7699 1.1378 39 1 8.1343 7.2238 2.7452 40 1 8.9004 6.5629 1.2805 41 1 4.9039 5.4701 2.3420 42 1 5.8010 6.6858 3.2828 43 1 5.2010 7.0850 1.6552 44 1 0.1844 5.1205 -0.0027 45 1 1.5613 5.8123 0.8879 46 1 1.5629 5.8119 -0.8921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:27 Heat of formation + Delta-G solvation = -10.950416 kcal Electronic energy + Delta-G solvation = -27353.859275 eV Core-core repulsion = 23758.305477 eV Total energy + Delta-G solvation = -3595.553798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98998 -39.39255 -36.71363 -34.79545 -32.48480 -32.35360 -31.34899 -28.94798 -28.45311 -27.08360 -27.00930 -26.83355 -25.48221 -22.90317 -21.84286 -20.80138 -18.96545 -18.34474 -17.14845 -17.01042 -16.04890 -15.91190 -15.39685 -15.13812 -14.98085 -14.19594 -14.14525 -13.80737 -13.58019 -13.43757 -13.28288 -13.22251 -12.92162 -12.80054 -12.64522 -12.48471 -12.35178 -12.13336 -11.90498 -11.37084 -11.30881 -11.18150 -11.11003 -10.88151 -10.79467 -10.49036 -10.46692 -10.34368 -10.23524 -10.06924 -9.63748 -9.51241 -9.15337 -8.84491 -8.69383 -7.68701 -6.95254 -6.24620 -4.23657 1.54458 1.83344 2.14869 2.60256 3.15599 3.22488 3.25985 3.71284 3.92741 4.04789 4.21735 5.05374 5.08106 5.11251 5.11875 5.12373 5.20229 5.24885 5.40822 5.60364 5.67622 5.74294 5.77869 5.80504 5.82145 5.86889 6.03671 6.08712 6.10128 6.14339 6.21567 6.26758 6.33751 6.40406 6.44616 6.48034 6.52221 6.67061 6.71453 6.74878 7.07428 7.33611 7.40495 7.45252 8.15496 8.40006 8.83405 8.98609 9.31521 10.87632 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.006255 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.377128 B = 4475.138557 C = 6316.035656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.026 6.026 3 C -0.071 4.071 4 C -0.119 4.119 5 C -0.212 4.212 6 C 0.595 3.405 7 O -0.567 6.567 8 N -0.578 5.578 9 C 0.187 3.813 10 C -0.537 4.537 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.880 5.880 14 Si 0.845 3.155 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.260 1.260 18 C 0.130 3.870 19 C -0.085 4.085 20 C -0.145 4.145 21 C -0.136 4.136 22 C -0.131 4.131 23 C 0.054 3.946 24 C -0.062 4.062 25 O -0.181 6.181 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.207 0.793 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 4.645 8.503 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.211 5.789 3 C -0.228 4.228 4 C -0.145 4.145 5 C -0.217 4.217 6 C 0.385 3.615 7 O -0.450 6.450 8 N -0.306 5.306 9 C 0.066 3.934 10 C -0.575 4.575 11 H 0.099 0.901 12 C -0.126 4.126 13 N -0.516 5.516 14 Si 0.670 3.330 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.184 1.184 18 C 0.007 3.993 19 C -0.086 4.086 20 C -0.202 4.202 21 C -0.193 4.193 22 C -0.189 4.189 23 C -0.002 4.002 24 C -0.118 4.118 25 O -0.080 6.080 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.223 0.777 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.470 3.977 8.310 11.258 hybrid contribution -0.366 0.085 0.521 0.643 sum -6.837 4.062 8.831 11.884 Atomic orbital electron populations 1.23546 0.95971 1.06599 1.06040 1.85941 1.04792 0.93915 1.94300 1.23930 0.90813 0.91557 1.16488 1.24462 0.98146 0.92512 0.99374 1.21110 0.92899 0.93875 1.13844 1.17029 0.82118 0.86421 0.75910 1.90657 1.83089 1.18529 1.52747 1.47556 1.05236 1.08458 1.69351 1.20516 0.97103 0.77662 0.98108 1.21384 1.48519 0.95182 0.92392 0.90129 1.24847 0.94590 0.97408 0.95711 1.69865 1.46751 1.12423 1.22590 0.87310 0.79881 0.81356 0.84403 1.18691 1.20381 1.18403 1.21416 0.91100 0.91995 0.94831 1.20961 0.95794 0.95463 0.96401 1.22009 1.01332 0.98015 0.98812 1.21781 0.98360 0.97856 1.01344 1.21805 0.96421 1.01294 0.99348 1.22650 0.90906 0.86031 1.00633 1.20322 0.99053 0.87600 1.04828 1.83796 1.37134 1.13451 1.73591 0.89882 0.89712 0.87581 0.77680 0.94067 0.94291 0.92176 0.90504 0.90391 0.92645 0.93436 0.91852 0.92669 0.92901 0.92667 0.93096 0.93906 0.91862 0.91419 0.89324 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.45 101.05 1.06 -0.74 16 2 S -0.03 -0.44 22.74 -107.50 -2.44 -2.88 16 3 C -0.07 -1.40 7.32 29.62 0.22 -1.19 16 4 C -0.12 -2.63 8.17 -37.11 -0.30 -2.94 16 5 C -0.21 -4.48 6.08 -103.29 -0.63 -5.10 16 6 C 0.59 12.70 6.04 -12.54 -0.08 12.62 16 7 O -0.57 -12.14 13.70 5.26 0.07 -12.06 16 8 N -0.58 -11.94 2.01 -176.35 -0.35 -12.29 16 9 C 0.19 4.16 2.57 -5.20 -0.01 4.15 16 10 C -0.54 -14.00 7.69 -34.44 -0.26 -14.27 16 11 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 12 C 0.08 2.10 5.04 -17.82 -0.09 2.01 16 13 N -0.88 -25.19 13.96 55.43 0.77 -24.42 16 14 Si 0.85 19.33 26.63 -169.99 -4.53 14.80 16 15 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 18 C 0.13 2.32 4.58 -4.05 -0.02 2.31 16 19 C -0.09 -1.28 0.85 -154.51 -0.13 -1.41 16 20 C -0.14 -2.17 7.31 37.16 0.27 -1.90 16 21 C -0.14 -1.68 8.47 37.16 0.31 -1.37 16 22 C -0.13 -2.02 7.17 37.16 0.27 -1.76 16 23 C 0.05 1.00 7.37 -35.00 -0.26 0.74 16 24 C -0.06 -0.88 9.19 36.01 0.33 -0.55 16 25 O -0.18 -3.34 10.19 6.62 0.07 -3.28 16 26 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.11 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.21 4.91 2.37 -52.49 -0.12 4.78 16 30 H 0.04 0.89 5.16 -51.93 -0.27 0.62 16 31 H 0.04 0.89 4.27 -51.93 -0.22 0.66 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 34 H 0.08 1.42 7.32 -51.93 -0.38 1.04 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 1.06 5.87 -51.92 -0.30 0.76 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.88 6.79 -51.93 -0.35 0.52 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.03 7.38 -51.93 -0.38 0.64 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.38 7.96 -51.93 -0.41 0.96 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -29.42 369.42 -7.28 -36.70 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.11 Total: 7.24 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 0.67 Total: -9.38 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.42 Total: -36.71 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.14 Total: -15.34 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.53 Total: 14.80 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.44 Total: -2.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.42 -7.28 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.749 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds