Wall clock time and date at job start Tue Mar 31 2020 14:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 102.99940 * 2 1 4 4 C 1.35125 * 125.52550 * 180.02562 * 3 2 1 5 5 C 1.47058 * 105.87913 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.14452 * 179.97438 * 5 4 3 7 7 O 1.21619 * 120.00270 * 170.86721 * 6 5 4 8 8 N 1.34783 * 120.00349 * 350.87470 * 6 5 4 9 9 C 1.46497 * 119.99245 * 1.92989 * 8 6 5 10 10 C 1.50697 * 109.47330 * 82.00273 * 9 8 6 11 11 H 1.07998 * 120.00111 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00099 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99800 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47207 * 89.99902 * 14 12 10 16 16 H 1.48500 * 109.47323 * 209.99702 * 14 12 10 17 17 H 1.48503 * 109.47310 * 329.99890 * 14 12 10 18 18 C 1.46498 * 119.99941 * 181.93106 * 8 6 5 19 19 C 1.52994 * 109.47114 * 92.53137 * 18 8 6 20 20 C 1.52997 * 109.47440 * 63.40411 * 19 18 8 21 21 C 1.52997 * 109.47101 * 183.40344 * 19 18 8 22 22 C 1.53003 * 109.47091 * 303.40317 * 19 18 8 23 23 C 1.36330 * 105.71125 * 359.97438 * 5 4 3 24 24 C 1.50699 * 125.71991 * 180.02562 * 23 5 4 25 25 O 1.33951 * 108.56339 * 359.97438 * 23 5 4 26 26 H 1.09001 * 109.47542 * 300.00189 * 1 2 3 27 27 H 1.09006 * 109.47517 * 60.00089 * 1 2 3 28 28 H 1.09005 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.07997 * 127.06321 * 359.70914 * 4 3 2 30 30 H 1.09003 * 109.46585 * 201.99888 * 9 8 6 31 31 H 1.08999 * 109.47328 * 321.99479 * 9 8 6 32 32 H 0.97003 * 119.99787 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.46375 * 212.52987 * 18 8 6 34 34 H 1.08997 * 109.47122 * 332.52534 * 18 8 6 35 35 H 1.09002 * 109.47654 * 59.99919 * 20 19 18 36 36 H 1.09000 * 109.47501 * 180.02562 * 20 19 18 37 37 H 1.09008 * 109.47336 * 300.00224 * 20 19 18 38 38 H 1.09007 * 109.47411 * 60.00134 * 21 19 18 39 39 H 1.09003 * 109.47462 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47353 * 300.00192 * 21 19 18 41 41 H 1.08997 * 109.47213 * 65.22820 * 22 19 18 42 42 H 1.08998 * 109.47151 * 185.22410 * 22 19 18 43 43 H 1.08998 * 109.47168 * 305.22802 * 22 19 18 44 44 H 1.09001 * 109.47162 * 179.97438 * 24 23 5 45 45 H 1.08999 * 109.46830 * 299.94781 * 24 23 5 46 46 H 1.09000 * 109.47362 * 59.94558 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4584 2.2345 -0.0005 5 6 3.2882 3.6952 -0.0009 6 6 4.3521 4.7152 -0.0010 7 8 4.0715 5.8866 -0.1685 8 7 5.6361 4.3497 0.1845 9 6 5.9790 2.9344 0.3438 10 6 6.0739 2.2847 -1.0125 11 1 5.8961 2.8676 -1.9042 12 6 6.3877 0.9460 -1.1153 13 7 6.4700 0.3789 -2.2990 14 14 6.6959 -0.0621 0.4268 15 1 5.4167 -0.6528 0.8960 16 1 7.6610 -1.1490 0.1231 17 1 7.2549 0.8141 1.4875 18 6 6.6887 5.3679 0.2266 19 6 6.9267 5.7956 1.6762 20 6 7.4392 4.6009 2.4829 21 6 7.9650 6.9187 1.7125 22 6 5.6137 6.2951 2.2826 23 6 1.9419 3.9100 -0.0012 24 6 1.2659 5.2568 -0.0022 25 8 1.3208 2.7232 -0.0016 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.3898 1.6879 0.0034 30 1 6.9375 2.8483 0.8558 31 1 5.2072 2.4375 0.9316 32 1 6.6911 -0.5629 -2.3713 33 1 7.6094 4.9558 -0.1865 34 1 6.3816 6.2325 -0.3617 35 1 8.3745 4.2450 2.0510 36 1 7.6083 4.9056 3.5158 37 1 6.6994 3.8007 2.4570 38 1 7.5999 7.7699 1.1378 39 1 8.1343 7.2238 2.7452 40 1 8.9004 6.5629 1.2805 41 1 4.9039 5.4701 2.3420 42 1 5.8010 6.6858 3.2828 43 1 5.2010 7.0850 1.6552 44 1 0.1844 5.1205 -0.0027 45 1 1.5613 5.8123 0.8879 46 1 1.5629 5.8119 -0.8921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597161634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:26 Heat of formation + Delta-G solvation = -27.038713 kcal Electronic energy + Delta-G solvation = -27354.556916 eV Core-core repulsion = 23758.305477 eV Total energy + Delta-G solvation = -3596.251439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.50723 -40.95343 -38.12982 -36.47788 -34.35339 -33.90643 -32.78420 -30.27833 -29.91025 -28.50420 -28.13000 -28.08104 -26.91715 -24.71716 -23.48168 -22.34285 -20.40888 -19.67044 -19.16778 -18.63464 -17.59083 -17.44738 -16.95149 -16.55400 -16.52531 -15.94690 -15.46085 -15.07878 -14.91503 -14.72809 -14.67998 -14.52811 -14.47160 -14.19427 -14.03505 -13.81817 -13.59997 -13.44023 -13.07726 -12.82866 -12.71651 -12.58607 -12.54661 -12.51465 -12.24192 -11.99446 -11.84919 -11.70697 -11.66337 -11.58160 -11.50765 -11.08714 -10.84937 -10.69261 -10.30891 -9.34068 -8.36498 -8.32520 -6.35885 0.13253 0.32356 0.96890 0.99817 1.33681 1.36358 1.42813 2.21706 2.28090 2.40229 2.43729 3.01335 3.70592 3.83613 3.89325 3.96317 4.06408 4.15827 4.21607 4.26155 4.44116 4.53065 4.58459 4.63796 4.66005 4.69953 4.75697 4.79285 4.79814 4.83265 4.90126 4.93236 4.94732 5.06914 5.08135 5.16772 5.21918 5.32008 5.38439 5.43109 5.50117 5.52897 5.72786 5.88630 6.19262 6.57880 6.68576 7.20735 7.35291 8.83764 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.006255 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.377128 B = 4475.138557 C = 6316.035656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.059 6.059 3 C -0.065 4.065 4 C -0.157 4.157 5 C -0.248 4.248 6 C 0.590 3.410 7 O -0.575 6.575 8 N -0.581 5.581 9 C 0.203 3.797 10 C -0.529 4.529 11 H 0.028 0.972 12 C 0.033 3.967 13 N -0.930 5.930 14 Si 0.902 3.098 15 H -0.254 1.254 16 H -0.277 1.277 17 H -0.236 1.236 18 C 0.125 3.875 19 C -0.080 4.080 20 C -0.143 4.143 21 C -0.130 4.130 22 C -0.123 4.123 23 C 0.067 3.933 24 C -0.058 4.058 25 O -0.170 6.170 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.186 0.814 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.269 0.731 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 5.026 10.965 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.176 5.824 3 C -0.223 4.223 4 C -0.183 4.183 5 C -0.254 4.254 6 C 0.380 3.620 7 O -0.458 6.458 8 N -0.310 5.310 9 C 0.081 3.919 10 C -0.568 4.568 11 H 0.046 0.954 12 C -0.168 4.168 13 N -0.568 5.568 14 Si 0.724 3.276 15 H -0.178 1.178 16 H -0.202 1.202 17 H -0.159 1.159 18 C 0.002 3.998 19 C -0.081 4.081 20 C -0.200 4.200 21 C -0.188 4.188 22 C -0.180 4.180 23 C 0.011 3.989 24 C -0.114 4.114 25 O -0.069 6.069 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.157 0.843 29 H 0.203 0.797 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.603 4.391 10.786 13.908 hybrid contribution -0.146 -0.008 -0.338 0.369 sum -7.750 4.383 10.448 13.727 Atomic orbital electron populations 1.23702 0.90899 1.08969 1.06921 1.86037 1.10398 0.91920 1.94014 1.24191 0.90483 0.92943 1.14662 1.24277 0.98518 0.93287 1.02243 1.21286 0.94227 0.93625 1.16237 1.17177 0.82452 0.86558 0.75775 1.90627 1.83246 1.18635 1.53316 1.47587 1.05795 1.08281 1.69300 1.20252 0.97517 0.78411 0.95740 1.21366 1.47910 0.95084 0.92391 0.95399 1.25564 0.94137 0.98369 0.98681 1.70013 1.48747 1.12886 1.25196 0.86387 0.80149 0.79978 0.81094 1.17828 1.20222 1.15858 1.21609 0.90013 0.90933 0.97217 1.20931 0.96629 0.96591 0.93969 1.21985 1.00607 0.97191 1.00256 1.21740 0.97538 0.96677 1.02798 1.21715 0.95872 0.99988 1.00467 1.23361 0.90378 0.87241 0.97968 1.20489 1.00951 0.84987 1.04981 1.83823 1.36599 1.13340 1.73122 0.88536 0.89223 0.84344 0.79700 0.93003 0.93932 0.92126 0.90987 0.91233 0.92462 0.91012 0.94020 0.92499 0.90868 0.92009 0.95393 0.91452 0.93092 0.87876 0.88400 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.45 113.37 1.18 -1.62 16 2 S -0.06 -1.97 22.74 -56.49 -1.28 -3.25 16 3 C -0.07 -2.60 7.32 67.10 0.49 -2.11 16 4 C -0.16 -7.13 8.17 23.87 0.20 -6.93 16 5 C -0.25 -10.72 6.08 -19.00 -0.12 -10.84 16 6 C 0.59 25.86 6.04 86.65 0.52 26.38 16 7 O -0.57 -24.98 13.70 -4.09 -0.06 -25.03 16 8 N -0.58 -24.75 2.01 -830.09 -1.67 -26.41 16 9 C 0.20 9.23 2.57 85.63 0.22 9.45 16 10 C -0.53 -28.96 7.69 25.60 0.20 -28.77 16 11 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 12 C 0.03 1.80 5.04 84.66 0.43 2.23 16 13 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 14 Si 0.90 40.23 26.63 68.60 1.83 42.06 16 15 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 18 C 0.12 4.53 4.58 86.38 0.40 4.92 16 19 C -0.08 -2.31 0.85 -52.18 -0.04 -2.35 16 20 C -0.14 -4.03 7.31 71.98 0.53 -3.51 16 21 C -0.13 -2.91 8.47 71.98 0.61 -2.30 16 22 C -0.12 -3.64 7.17 71.98 0.52 -3.12 16 23 C 0.07 2.45 7.37 25.24 0.19 2.63 16 24 C -0.06 -1.54 9.19 71.24 0.65 -0.89 16 25 O -0.17 -6.12 10.19 0.77 0.01 -6.11 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.19 9.16 2.37 -2.91 -0.01 9.16 16 30 H 0.05 2.25 5.16 -2.39 -0.01 2.23 16 31 H 0.04 1.97 4.27 -2.39 -0.01 1.96 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.07 2.63 8.09 -2.38 -0.02 2.61 16 34 H 0.07 2.61 7.32 -2.39 -0.02 2.59 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.35 5.87 -2.38 -0.01 1.33 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 0.94 6.79 -2.39 -0.02 0.92 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.61 7.38 -2.39 -0.02 1.60 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.09 2.54 7.96 -2.39 -0.02 2.52 16 Total: -1.00 -67.82 369.42 6.02 -61.80 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.92 Total: 29.05 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.97 Total: -16.83 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.37 Total: -81.69 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.83 Total: 42.06 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -1.28 Total: -3.25 kcal Total: -67.82 6.02 -61.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.762 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds