Wall clock time and date at job start Tue Mar 31 2020 14:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.52997 * 109.46925 * 294.68327 * 3 2 1 5 5 C 1.53001 * 109.47161 * 174.67944 * 3 2 1 6 6 N 1.46502 * 109.47007 * 54.67923 * 3 2 1 7 7 C 1.46496 * 120.00208 * 240.03067 * 6 3 2 8 8 C 1.50705 * 109.46748 * 262.48612 * 7 6 3 9 9 H 1.07998 * 120.00317 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99605 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00354 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99669 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46837 * 59.99727 * 12 10 8 14 14 H 1.48504 * 109.46886 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.46895 * 299.99681 * 12 10 8 16 16 C 1.34782 * 119.99797 * 60.02679 * 6 3 2 17 17 O 1.21614 * 120.00158 * 0.97799 * 16 6 3 18 18 C 1.47383 * 119.99707 * 180.98082 * 16 6 3 19 19 C 1.47056 * 127.14640 * 351.61082 * 18 16 6 20 20 C 1.35124 * 105.88432 * 180.02562 * 19 18 16 21 21 S 1.76204 * 125.53198 * 179.97438 * 20 19 18 22 22 C 1.81393 * 103.00245 * 180.02562 * 21 20 19 23 23 O 1.34311 * 108.94307 * 0.02562 * 20 19 18 24 24 C 1.33953 * 110.90170 * 359.97438 * 23 20 19 25 25 C 1.50692 * 125.71992 * 179.97438 * 24 23 20 26 26 H 1.09005 * 109.47056 * 299.99866 * 1 2 3 27 27 H 1.08992 * 109.47276 * 59.99907 * 1 2 3 28 28 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47056 * 240.00134 * 2 1 3 30 30 H 1.09004 * 109.47650 * 120.00190 * 2 1 3 31 31 H 1.09003 * 109.46901 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47055 * 299.99335 * 4 3 2 33 33 H 1.08997 * 109.47744 * 59.99743 * 4 3 2 34 34 H 1.09002 * 109.46912 * 306.36216 * 5 3 2 35 35 H 1.08994 * 109.47177 * 66.36282 * 5 3 2 36 36 H 1.09000 * 109.46990 * 186.36593 * 5 3 2 37 37 H 1.09004 * 109.47335 * 22.47694 * 7 6 3 38 38 H 1.08993 * 109.47862 * 142.48454 * 7 6 3 39 39 H 0.96996 * 119.99939 * 180.02562 * 11 10 8 40 40 H 1.08004 * 127.05917 * 0.27353 * 19 18 16 41 41 H 1.08994 * 109.47542 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.47289 * 300.00340 * 22 21 20 43 43 H 1.09000 * 109.46991 * 59.99918 * 22 21 20 44 44 H 1.08999 * 109.47381 * 359.97438 * 25 24 23 45 45 H 1.08997 * 109.47201 * 119.97876 * 25 24 23 46 46 H 1.09001 * 109.47373 * 239.98116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6420 2.1241 -1.3107 5 6 3.5641 1.4446 0.1338 6 7 1.4499 2.1691 1.1270 7 6 0.6237 3.3540 0.8827 8 6 1.4611 4.5948 1.0569 9 1 2.5042 4.5093 1.3233 10 6 0.8951 5.8391 0.8771 11 7 -0.3752 5.9433 0.5532 12 14 1.9329 7.3773 1.0937 13 1 3.0610 7.3532 0.1282 14 1 1.0955 8.5783 0.8460 15 1 2.4673 7.4228 2.4784 16 6 1.6670 1.7474 2.3886 17 8 2.3674 0.7743 2.5924 18 6 1.0557 2.4656 3.5211 19 6 0.3314 3.7446 3.4747 20 6 -0.0416 4.0047 4.7471 21 16 -0.9454 5.4203 5.2802 22 6 -1.1063 5.1527 7.0670 23 8 0.3891 3.0098 5.5398 24 6 1.0450 2.0826 4.8295 25 6 1.6675 0.8272 5.3838 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0058 3.1517 -1.3109 32 1 2.0812 1.5835 -2.1493 33 1 0.5562 2.1227 -1.4060 34 1 3.8529 0.8617 1.0084 35 1 4.0078 1.0042 -0.7591 36 1 3.9175 2.4695 0.2474 37 1 0.2314 3.3202 -0.1337 38 1 -0.2043 3.3720 1.5913 39 1 -0.7732 6.8187 0.4264 40 1 0.1343 4.3497 2.6020 41 1 -1.6588 5.9811 7.5102 42 1 -1.6422 4.2209 7.2481 43 1 -0.1150 5.0949 7.5164 44 1 1.5035 0.7852 6.4606 45 1 1.2112 -0.0432 4.9125 46 1 2.7381 0.8317 5.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598831024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:04 Heat of formation + Delta-G solvation = -8.045998 kcal Electronic energy + Delta-G solvation = -27634.344483 eV Core-core repulsion = 24038.916630 eV Total energy + Delta-G solvation = -3595.427853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88880 -39.51323 -36.25123 -34.29393 -32.29474 -31.83915 -31.11979 -29.87308 -28.89771 -27.81253 -26.55049 -26.25191 -23.26389 -23.13421 -22.11614 -21.06506 -19.24889 -18.22335 -16.86040 -16.53161 -15.91052 -15.63209 -15.33102 -15.10213 -14.57815 -14.34032 -14.02490 -13.87385 -13.52337 -13.38192 -12.99452 -12.85283 -12.72508 -12.62178 -12.50481 -12.36369 -12.22751 -11.76068 -11.56707 -11.46740 -11.17778 -11.13149 -11.02806 -10.90541 -10.65523 -10.39863 -10.28181 -10.23946 -10.05981 -9.79154 -9.67183 -9.38963 -8.83961 -8.74284 -8.49754 -7.60373 -6.86276 -6.19667 -4.25036 1.63599 1.91747 2.22472 2.73151 3.26616 3.31170 3.35290 3.80126 4.00278 4.15693 4.35716 5.11864 5.12518 5.15176 5.24164 5.28541 5.43932 5.53304 5.65460 5.70557 5.72378 5.80109 5.82633 5.85439 6.01867 6.07859 6.16725 6.19756 6.24268 6.31980 6.39514 6.47432 6.53640 6.63103 6.64347 6.71344 6.88140 6.92472 6.98827 7.26102 7.32951 7.52668 7.67583 7.78838 8.05909 8.42126 8.81978 9.13442 9.39646 10.84344 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.006713 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.538304 B = 4169.898564 C = 6089.180351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.158 4.158 6 N -0.575 5.575 7 C 0.212 3.788 8 C -0.530 4.530 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.592 3.408 17 O -0.572 6.572 18 C -0.212 4.212 19 C -0.118 4.118 20 C -0.078 4.078 21 S -0.022 6.022 22 C -0.155 4.155 23 O -0.184 6.184 24 C 0.049 3.951 25 C -0.060 4.060 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.226 0.774 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -6.025 5.813 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.095 3.905 4 C -0.207 4.207 5 C -0.216 4.216 6 N -0.304 5.304 7 C 0.092 3.908 8 C -0.568 4.568 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.715 3.285 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.382 3.618 17 O -0.455 6.455 18 C -0.218 4.218 19 C -0.144 4.144 20 C -0.235 4.235 21 S 0.214 5.786 22 C -0.324 4.324 23 O -0.083 6.083 24 C -0.007 4.007 25 C -0.117 4.117 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.242 0.758 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.918 -5.400 5.596 7.831 hybrid contribution 0.975 0.201 0.673 1.202 sum 0.057 -5.199 6.269 8.144 Atomic orbital electron populations 1.21722 0.96096 1.00336 1.02143 1.21930 0.96045 0.96602 1.02440 1.20195 0.92799 0.90887 0.86571 1.22128 1.01933 1.01942 0.94713 1.22177 0.94981 1.02492 1.01912 1.48061 1.49653 1.28943 1.03785 1.20150 0.90627 0.80876 0.99131 1.21431 0.97296 0.90364 1.47755 0.92086 1.24899 0.95061 0.98908 0.94814 1.69898 1.11066 1.25028 1.46439 0.86679 0.80363 0.82298 0.79171 1.20172 1.20985 1.19753 1.17054 0.79898 0.82569 0.82290 1.90594 1.40929 1.28618 1.85396 1.21204 1.08492 0.98576 0.93527 1.24878 0.95961 0.95843 0.97670 1.23969 1.11216 0.95421 0.92894 1.85937 1.67080 1.20729 1.04813 1.23542 1.05913 1.06266 0.96660 1.83779 1.58304 1.27754 1.38464 1.22632 0.96390 0.91866 0.89849 1.20291 1.01134 0.90140 1.00087 0.92646 0.92837 0.93772 0.92280 0.90168 0.90493 0.92861 0.91809 0.90914 0.93126 0.92413 0.93399 0.93371 0.92212 0.75797 0.87698 0.89935 0.89943 0.91605 0.89384 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.46 37.15 0.35 -1.97 16 2 C -0.13 -2.17 4.67 -26.73 -0.12 -2.29 16 3 C 0.18 3.29 0.73 -131.82 -0.10 3.19 16 4 C -0.15 -2.59 6.92 37.16 0.26 -2.33 16 5 C -0.16 -2.80 8.30 37.16 0.31 -2.49 16 6 N -0.57 -12.01 1.49 -161.44 -0.24 -12.25 16 7 C 0.21 4.88 4.05 -5.19 -0.02 4.86 16 8 C -0.53 -13.24 6.89 -34.44 -0.24 -13.48 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.69 4.75 -17.82 -0.08 1.61 16 11 N -0.89 -23.14 13.20 55.43 0.73 -22.41 16 12 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 C 0.59 12.75 6.77 -12.54 -0.08 12.66 16 17 O -0.57 -12.23 11.99 5.27 0.06 -12.17 16 18 C -0.21 -4.55 6.08 -103.29 -0.63 -5.17 16 19 C -0.12 -2.65 8.17 -37.12 -0.30 -2.95 16 20 C -0.08 -1.57 7.32 29.62 0.22 -1.35 16 21 S -0.02 -0.37 22.74 -107.50 -2.44 -2.81 16 22 C -0.15 -1.87 10.45 101.05 1.06 -0.81 16 23 O -0.18 -3.47 10.19 6.62 0.07 -3.40 16 24 C 0.05 0.92 7.37 -35.00 -0.26 0.67 16 25 C -0.06 -0.88 9.18 36.00 0.33 -0.55 16 26 H 0.05 1.00 7.26 -51.93 -0.38 0.62 16 27 H 0.05 0.82 6.57 -51.93 -0.34 0.48 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.44 6.36 -51.93 -0.33 1.11 16 31 H 0.08 1.49 7.55 -51.93 -0.39 1.10 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.06 1.12 5.38 -51.93 -0.28 0.84 16 34 H 0.07 1.37 6.33 -51.93 -0.33 1.05 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.14 5.43 -51.93 -0.28 0.85 16 38 H 0.05 1.19 4.75 -51.93 -0.25 0.95 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.23 5.53 3.10 -52.48 -0.16 5.37 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -27.20 369.85 -7.52 -34.72 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.93 Total: 7.77 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 0.68 Total: -10.42 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.49 Total: -34.66 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.13 Total: -15.57 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.44 Total: -2.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.20 -7.52 -34.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598831024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.671 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds