Wall clock time and date at job start Tue Mar 31 2020 14:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.52997 * 109.46925 * 294.68327 * 3 2 1 5 5 C 1.53001 * 109.47161 * 174.67944 * 3 2 1 6 6 N 1.46502 * 109.47007 * 54.67923 * 3 2 1 7 7 C 1.46496 * 120.00208 * 240.03067 * 6 3 2 8 8 C 1.50705 * 109.46748 * 262.48612 * 7 6 3 9 9 H 1.07998 * 120.00317 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99605 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00354 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99669 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46837 * 59.99727 * 12 10 8 14 14 H 1.48504 * 109.46886 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.46895 * 299.99681 * 12 10 8 16 16 C 1.34782 * 119.99797 * 60.02679 * 6 3 2 17 17 O 1.21614 * 120.00158 * 0.97799 * 16 6 3 18 18 C 1.47383 * 119.99707 * 180.98082 * 16 6 3 19 19 C 1.47056 * 127.14640 * 351.61082 * 18 16 6 20 20 C 1.35124 * 105.88432 * 180.02562 * 19 18 16 21 21 S 1.76204 * 125.53198 * 179.97438 * 20 19 18 22 22 C 1.81393 * 103.00245 * 180.02562 * 21 20 19 23 23 O 1.34311 * 108.94307 * 0.02562 * 20 19 18 24 24 C 1.33953 * 110.90170 * 359.97438 * 23 20 19 25 25 C 1.50692 * 125.71992 * 179.97438 * 24 23 20 26 26 H 1.09005 * 109.47056 * 299.99866 * 1 2 3 27 27 H 1.08992 * 109.47276 * 59.99907 * 1 2 3 28 28 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47056 * 240.00134 * 2 1 3 30 30 H 1.09004 * 109.47650 * 120.00190 * 2 1 3 31 31 H 1.09003 * 109.46901 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47055 * 299.99335 * 4 3 2 33 33 H 1.08997 * 109.47744 * 59.99743 * 4 3 2 34 34 H 1.09002 * 109.46912 * 306.36216 * 5 3 2 35 35 H 1.08994 * 109.47177 * 66.36282 * 5 3 2 36 36 H 1.09000 * 109.46990 * 186.36593 * 5 3 2 37 37 H 1.09004 * 109.47335 * 22.47694 * 7 6 3 38 38 H 1.08993 * 109.47862 * 142.48454 * 7 6 3 39 39 H 0.96996 * 119.99939 * 180.02562 * 11 10 8 40 40 H 1.08004 * 127.05917 * 0.27353 * 19 18 16 41 41 H 1.08994 * 109.47542 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.47289 * 300.00340 * 22 21 20 43 43 H 1.09000 * 109.46991 * 59.99918 * 22 21 20 44 44 H 1.08999 * 109.47381 * 359.97438 * 25 24 23 45 45 H 1.08997 * 109.47201 * 119.97876 * 25 24 23 46 46 H 1.09001 * 109.47373 * 239.98116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6420 2.1241 -1.3107 5 6 3.5641 1.4446 0.1338 6 7 1.4499 2.1691 1.1270 7 6 0.6237 3.3540 0.8827 8 6 1.4611 4.5948 1.0569 9 1 2.5042 4.5093 1.3233 10 6 0.8951 5.8391 0.8771 11 7 -0.3752 5.9433 0.5532 12 14 1.9329 7.3773 1.0937 13 1 3.0610 7.3532 0.1282 14 1 1.0955 8.5783 0.8460 15 1 2.4673 7.4228 2.4784 16 6 1.6670 1.7474 2.3886 17 8 2.3674 0.7743 2.5924 18 6 1.0557 2.4656 3.5211 19 6 0.3314 3.7446 3.4747 20 6 -0.0416 4.0047 4.7471 21 16 -0.9454 5.4203 5.2802 22 6 -1.1063 5.1527 7.0670 23 8 0.3891 3.0098 5.5398 24 6 1.0450 2.0826 4.8295 25 6 1.6675 0.8272 5.3838 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0058 3.1517 -1.3109 32 1 2.0812 1.5835 -2.1493 33 1 0.5562 2.1227 -1.4060 34 1 3.8529 0.8617 1.0084 35 1 4.0078 1.0042 -0.7591 36 1 3.9175 2.4695 0.2474 37 1 0.2314 3.3202 -0.1337 38 1 -0.2043 3.3720 1.5913 39 1 -0.7732 6.8187 0.4264 40 1 0.1343 4.3497 2.6020 41 1 -1.6588 5.9811 7.5102 42 1 -1.6422 4.2209 7.2481 43 1 -0.1150 5.0949 7.5164 44 1 1.5035 0.7852 6.4606 45 1 1.2112 -0.0432 4.9125 46 1 2.7381 0.8317 5.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598831024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:04 Heat of formation + Delta-G solvation = -20.568538 kcal Electronic energy + Delta-G solvation = -27634.887501 eV Core-core repulsion = 24038.916630 eV Total energy + Delta-G solvation = -3595.970871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.42670 -41.09878 -37.82565 -36.03030 -34.05154 -33.35602 -32.60109 -31.27111 -29.88759 -29.54267 -28.03845 -27.78099 -24.89805 -24.71785 -23.67740 -22.64688 -20.72103 -19.73935 -18.69342 -18.29042 -17.45216 -17.22280 -16.85097 -16.50722 -16.36365 -15.96613 -15.42346 -15.33012 -14.70276 -14.53060 -14.45618 -14.33123 -14.25080 -14.17193 -13.87510 -13.76317 -13.51597 -13.32243 -12.99952 -12.86640 -12.81231 -12.75538 -12.57613 -12.51353 -12.19744 -11.97688 -11.81585 -11.64325 -11.58404 -11.53080 -11.40968 -10.96486 -10.59148 -10.37074 -10.21588 -9.28550 -8.30446 -8.15574 -6.26296 0.20950 0.38738 1.04687 1.08174 1.38970 1.41855 1.47425 2.27494 2.40368 2.49646 2.56024 3.12845 3.75506 3.90688 4.02908 4.10084 4.22256 4.22556 4.25845 4.28428 4.44814 4.50432 4.65245 4.66045 4.69712 4.78994 4.82040 4.83769 4.84685 4.86096 4.97484 5.05569 5.07652 5.17974 5.23830 5.26825 5.30963 5.38708 5.49561 5.56614 5.63795 5.74277 5.92312 6.06108 6.14547 6.62319 6.90471 7.36688 7.50905 8.86379 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.006713 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.538304 B = 4169.898564 C = 6089.180351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.168 3.832 4 C -0.142 4.142 5 C -0.149 4.149 6 N -0.577 5.577 7 C 0.232 3.768 8 C -0.526 4.526 9 H 0.041 0.959 10 C 0.036 3.964 11 N -0.907 5.907 12 Si 0.931 3.069 13 H -0.274 1.274 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.586 3.414 17 O -0.575 6.575 18 C -0.248 4.248 19 C -0.154 4.154 20 C -0.074 4.074 21 S -0.054 6.054 22 C -0.139 4.139 23 O -0.174 6.174 24 C 0.061 3.939 25 C -0.056 4.056 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.269 0.731 40 H 0.202 0.798 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 -7.027 6.775 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.084 3.916 4 C -0.199 4.199 5 C -0.207 4.207 6 N -0.306 5.306 7 C 0.111 3.889 8 C -0.564 4.564 9 H 0.059 0.941 10 C -0.166 4.166 11 N -0.545 5.545 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.202 1.202 15 H -0.204 1.204 16 C 0.376 3.624 17 O -0.459 6.459 18 C -0.254 4.254 19 C -0.180 4.180 20 C -0.231 4.231 21 S 0.181 5.819 22 C -0.307 4.307 23 O -0.073 6.073 24 C 0.004 3.996 25 C -0.112 4.112 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.218 0.782 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.671 -6.413 6.551 9.192 hybrid contribution 0.878 0.499 0.464 1.111 sum 0.207 -5.915 7.016 9.178 Atomic orbital electron populations 1.21677 0.95860 1.01392 1.00916 1.21857 0.96153 0.95024 1.03108 1.20539 0.93079 0.91983 0.86022 1.22045 1.01661 1.00711 0.95464 1.22096 0.94738 1.01017 1.02866 1.48060 1.49463 1.28474 1.04584 1.19740 0.90147 0.81196 0.97784 1.21392 0.96309 0.91448 1.47299 0.94085 1.25353 0.95753 1.00715 0.94759 1.69959 1.11904 1.25376 1.47294 0.86003 0.79389 0.80265 0.78601 1.19896 1.20211 1.20393 1.17182 0.79938 0.82665 0.82582 1.90569 1.41142 1.28702 1.85509 1.21398 1.10082 0.99027 0.94858 1.24640 0.98316 0.96907 0.98153 1.24219 1.10315 0.95980 0.92550 1.86034 1.66341 1.19536 1.09958 1.23686 1.07025 1.08138 0.91883 1.83804 1.57997 1.27499 1.38009 1.23344 0.94747 0.92350 0.89161 1.20446 1.00573 0.87971 1.02192 0.95561 0.92357 0.91537 0.89246 0.91684 0.93218 0.89423 0.92384 0.92209 0.89902 0.94705 0.94329 0.95099 0.92198 0.78206 0.84451 0.88911 0.89237 0.88148 0.88734 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.46 71.98 0.68 -3.70 16 2 C -0.12 -3.87 4.67 30.59 0.14 -3.73 16 3 C 0.17 6.06 0.73 3.60 0.00 6.07 16 4 C -0.14 -4.82 6.92 71.98 0.50 -4.32 16 5 C -0.15 -5.23 8.30 71.98 0.60 -4.63 16 6 N -0.58 -24.81 1.49 -782.93 -1.17 -25.98 16 7 C 0.23 11.20 4.05 85.64 0.35 11.54 16 8 C -0.53 -27.41 6.89 25.60 0.18 -27.23 16 9 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 10 C 0.04 1.86 4.75 84.65 0.40 2.26 16 11 N -0.91 -48.74 13.20 21.45 0.28 -48.46 16 12 Si 0.93 42.67 29.54 68.60 2.03 44.70 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 C 0.59 25.86 6.77 86.65 0.59 26.45 16 17 O -0.57 -24.74 11.99 -4.07 -0.05 -24.79 16 18 C -0.25 -10.90 6.08 -19.00 -0.12 -11.02 16 19 C -0.15 -7.18 8.17 23.87 0.19 -6.99 16 20 C -0.07 -3.00 7.32 67.10 0.49 -2.50 16 21 S -0.05 -1.84 22.74 -56.49 -1.28 -3.12 16 22 C -0.14 -2.97 10.45 113.37 1.18 -1.79 16 23 O -0.17 -6.44 10.19 0.77 0.01 -6.44 16 24 C 0.06 2.26 7.37 25.24 0.19 2.44 16 25 C -0.06 -1.52 9.18 71.23 0.65 -0.87 16 26 H 0.03 0.94 7.26 -2.38 -0.02 0.93 16 27 H 0.06 1.73 6.57 -2.39 -0.02 1.71 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.06 2.27 6.36 -2.38 -0.02 2.25 16 31 H 0.05 1.95 7.55 -2.39 -0.02 1.93 16 32 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 2.02 5.38 -2.39 -0.01 2.01 16 34 H 0.06 2.24 6.33 -2.39 -0.02 2.22 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.04 1.92 5.43 -2.38 -0.01 1.90 16 38 H 0.03 1.64 4.75 -2.39 -0.01 1.63 16 39 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.20 10.41 3.10 -2.91 -0.01 10.40 16 41 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.09 2.58 7.97 -2.39 -0.02 2.56 16 Total: -1.00 -61.32 369.85 6.83 -54.49 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.99 Total: 27.60 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 6.03 Total: -18.00 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -0.89 Total: -74.44 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.04 Total: -31.23 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -1.28 Total: -3.12 kcal Total: -61.32 6.83 -54.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598831024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.917 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds