Wall clock time and date at job start Tue Mar 31 2020 14:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46633 * 2 1 4 4 C 1.52995 * 109.47188 * 306.94563 * 3 2 1 5 5 C 1.53005 * 109.46944 * 186.94794 * 3 2 1 6 6 N 1.46495 * 109.47422 * 66.94799 * 3 2 1 7 7 C 1.46504 * 120.00076 * 243.93177 * 6 3 2 8 8 C 1.50699 * 109.46962 * 269.99714 * 7 6 3 9 9 H 1.08001 * 120.00259 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99781 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99969 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00260 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46884 * 90.00040 * 12 10 8 14 14 H 1.48499 * 109.47559 * 210.00327 * 12 10 8 15 15 H 1.48501 * 109.46837 * 330.00148 * 12 10 8 16 16 C 1.34783 * 119.99932 * 63.93195 * 6 3 2 17 17 O 1.21801 * 119.99863 * 178.17185 * 16 6 3 18 18 C 1.41624 * 120.00073 * 358.44292 * 16 6 3 19 19 O 1.35284 * 126.01096 * 7.08497 * 18 16 6 20 20 C 1.34152 * 109.30904 * 179.86366 * 19 18 16 21 21 S 1.76199 * 125.61210 * 180.16035 * 20 19 18 22 22 C 1.80998 * 100.00120 * 0.28586 * 21 20 19 23 23 C 1.36519 * 108.77510 * 0.40061 * 20 19 18 24 24 C 1.38001 * 126.01265 * 187.39664 * 18 16 6 25 25 C 1.50702 * 126.62132 * 359.97438 * 24 18 16 26 26 H 1.08999 * 109.46553 * 60.00643 * 1 2 3 27 27 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47481 * 300.00381 * 1 2 3 29 29 H 1.08996 * 109.47819 * 240.00020 * 2 1 3 30 30 H 1.09005 * 109.47174 * 119.99053 * 2 1 3 31 31 H 1.08995 * 109.47486 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47174 * 299.99872 * 4 3 2 33 33 H 1.08994 * 109.47532 * 59.99981 * 4 3 2 34 34 H 1.09004 * 109.46888 * 260.83399 * 5 3 2 35 35 H 1.09001 * 109.46887 * 20.82590 * 5 3 2 36 36 H 1.08993 * 109.47398 * 140.83127 * 5 3 2 37 37 H 1.08999 * 109.46963 * 29.99963 * 7 6 3 38 38 H 1.08996 * 109.46851 * 150.00161 * 7 6 3 39 39 H 0.96995 * 119.99688 * 179.97438 * 11 10 8 40 40 H 1.09007 * 109.46961 * 299.99782 * 22 21 20 41 41 H 1.09001 * 109.47234 * 59.99528 * 22 21 20 42 42 H 1.09003 * 109.47701 * 180.02562 * 22 21 20 43 43 H 1.08001 * 126.41031 * 179.75356 * 23 20 19 44 44 H 1.08995 * 109.47322 * 90.00675 * 25 24 18 45 45 H 1.09001 * 109.46774 * 209.99996 * 25 24 18 46 46 H 1.08995 * 109.47448 * 329.99891 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3924 2.2124 -1.1528 5 6 3.5600 1.4462 -0.1745 6 7 1.6928 2.0833 1.2709 7 6 0.7742 3.2245 1.2890 8 6 1.5591 4.5033 1.1483 9 1 2.6344 4.4693 1.0543 10 6 0.9041 5.7165 1.1386 11 7 1.5890 6.8325 1.0152 12 14 -0.9559 5.7752 1.3005 13 1 -1.3250 5.8688 2.7358 14 1 -1.4786 6.9617 0.5766 15 1 -1.5426 4.5417 0.7178 16 6 2.2184 1.6229 2.4234 17 8 1.9561 2.1762 3.4763 18 6 3.0803 0.4992 2.4095 19 8 3.5632 -0.1193 1.3075 20 6 4.3480 -1.1414 1.6804 21 16 5.1995 -2.2322 0.5897 22 6 4.6928 -1.5412 -1.0047 23 6 4.3740 -1.2006 3.0441 24 6 3.5706 -0.1611 3.5177 25 6 3.2926 0.1748 4.9603 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.7560 3.2399 -1.1531 32 1 1.6508 1.7357 -2.0984 33 1 0.3096 2.2098 -1.0286 34 1 4.0370 1.5697 0.7978 35 1 3.8770 0.5020 -0.6174 36 1 3.8487 2.2693 -0.8281 37 1 0.0701 3.1373 0.4616 38 1 0.2274 3.2357 2.2319 39 1 1.1282 7.6860 1.0080 40 1 3.6072 -1.5863 -1.0916 41 1 5.0199 -0.5036 -1.0714 42 1 5.1458 -2.1180 -1.8111 43 1 4.9147 -1.9173 3.6444 44 1 2.4101 -0.3693 5.2965 45 1 4.1494 -0.1098 5.5711 46 1 3.1176 1.2462 5.0567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598834605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:54 Heat of formation + Delta-G solvation = 22.990758 kcal Electronic energy + Delta-G solvation = -28213.480011 eV Core-core repulsion = 24619.398012 eV Total energy + Delta-G solvation = -3594.081998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.88962 -39.44431 -37.23453 -33.97046 -33.31221 -31.95084 -30.76778 -30.24160 -29.35901 -28.70693 -27.01801 -26.48380 -23.55524 -23.48237 -21.79273 -21.20897 -20.31218 -18.40474 -17.62031 -16.98024 -16.88363 -16.46706 -15.44633 -15.30695 -14.84719 -14.30932 -14.05059 -13.99248 -13.89373 -13.56005 -13.37255 -13.29687 -13.01024 -12.89305 -12.50873 -12.37419 -12.13890 -12.08861 -11.80113 -11.68330 -11.45700 -11.30945 -11.27563 -11.03758 -11.01137 -10.67748 -10.58528 -10.37084 -10.21413 -10.06172 -9.68593 -9.52290 -9.20782 -9.11545 -8.57617 -7.77537 -7.40068 -6.08113 -4.05905 1.08075 1.10447 1.67534 2.35373 3.27967 3.33659 3.36229 3.42018 3.81226 3.81721 4.39310 4.77108 4.79514 4.82646 4.95792 4.98731 5.17856 5.24687 5.30026 5.36681 5.39042 5.52439 5.60986 5.70748 5.76706 5.86657 5.89659 5.96036 6.01069 6.05403 6.08476 6.23035 6.24392 6.30437 6.35423 6.42961 6.55584 6.61780 6.72934 6.84503 6.89778 6.98125 7.35540 7.61108 8.19966 8.46631 8.83740 8.97141 9.52122 11.05164 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.004912 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.426592 B = 5698.779447 C = 6430.656700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.172 3.828 4 C -0.153 4.153 5 C -0.163 4.163 6 N -0.571 5.571 7 C 0.212 3.788 8 C -0.521 4.521 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.897 5.897 12 Si 0.871 3.129 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.587 3.413 17 O -0.520 6.520 18 C -0.073 4.073 19 O -0.120 6.120 20 C -0.033 4.033 21 S -0.019 6.019 22 C -0.167 4.167 23 C -0.188 4.188 24 C -0.077 4.077 25 C -0.096 4.096 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -19.653 -3.888 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.086 3.914 4 C -0.210 4.210 5 C -0.220 4.220 6 N -0.302 5.302 7 C 0.092 3.908 8 C -0.559 4.559 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.698 3.302 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.191 1.191 16 C 0.375 3.625 17 O -0.400 6.400 18 C -0.128 4.128 19 O -0.018 6.018 20 C -0.196 4.196 21 S 0.218 5.782 22 C -0.335 4.335 23 C -0.215 4.215 24 C -0.081 4.081 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.171 0.829 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.848 -19.999 -3.570 20.886 hybrid contribution -1.564 1.126 -0.189 1.936 sum 3.285 -18.873 -3.759 19.522 Atomic orbital electron populations 1.21840 0.95791 1.00830 1.02533 1.22432 0.96365 0.96566 1.02518 1.20340 0.94441 0.91644 0.84956 1.22220 1.01266 1.02186 0.95329 1.22790 0.95225 1.01235 1.02726 1.48049 1.45712 1.31865 1.04527 1.19778 0.89383 0.83950 0.97658 1.21265 0.95694 0.88658 1.50311 0.90713 1.24825 0.97976 0.95456 0.94595 1.69894 1.35671 0.97635 1.50343 0.86922 0.86405 0.77873 0.78951 1.19910 1.21125 1.19079 1.15284 0.80531 0.81752 0.84938 1.90835 1.60889 1.57933 1.30338 1.21361 1.06538 1.00615 0.84274 1.85661 1.49448 1.34530 1.32161 1.24768 1.01544 0.95670 0.97623 1.85779 1.59447 1.35647 0.97313 1.24012 1.06457 1.05900 0.97173 1.21260 1.05800 1.02567 0.91851 1.20729 0.96580 0.94329 0.96441 1.20456 1.01189 1.04677 0.88902 0.92263 0.93401 0.92424 0.91791 0.90314 0.89488 0.92611 0.91730 0.91263 0.91631 0.91965 0.94418 0.94728 0.92616 0.88789 0.88176 0.87254 0.82923 0.91085 0.91725 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.26 37.16 0.34 -1.77 16 2 C -0.14 -1.98 4.17 -26.73 -0.11 -2.09 16 3 C 0.17 2.86 0.74 -131.82 -0.10 2.76 16 4 C -0.15 -2.50 6.52 37.15 0.24 -2.26 16 5 C -0.16 -2.55 7.59 37.16 0.28 -2.27 16 6 N -0.57 -11.88 1.94 -163.53 -0.32 -12.20 16 7 C 0.21 5.09 3.59 -5.19 -0.02 5.07 16 8 C -0.52 -14.58 9.02 -34.44 -0.31 -14.89 16 9 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 12 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 16 C 0.59 12.54 6.81 -14.97 -0.10 12.44 16 17 O -0.52 -12.72 14.20 5.10 0.07 -12.65 16 18 C -0.07 -1.29 4.66 -38.38 -0.18 -1.47 16 19 O -0.12 -1.79 1.72 3.33 0.01 -1.78 16 20 C -0.03 -0.43 7.28 30.11 0.22 -0.21 16 21 S -0.02 -0.19 22.90 -107.50 -2.46 -2.65 16 22 C -0.17 -1.33 8.99 101.05 0.91 -0.42 16 23 C -0.19 -2.51 10.77 -39.67 -0.43 -2.94 16 24 C -0.08 -1.21 6.21 -104.18 -0.65 -1.86 16 25 C -0.10 -1.39 9.87 36.01 0.36 -1.03 16 26 H 0.06 0.77 6.33 -51.93 -0.33 0.45 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.92 7.81 -51.93 -0.41 0.52 16 29 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 30 H 0.08 1.19 4.43 -52.36 -0.23 0.96 16 31 H 0.09 1.69 7.06 -51.93 -0.37 1.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.06 4.91 -51.93 -0.25 0.81 16 34 H 0.07 1.25 4.97 -51.93 -0.26 0.99 16 35 H 0.07 0.81 2.74 -51.93 -0.14 0.67 16 36 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 37 H 0.04 0.86 4.86 -51.93 -0.25 0.61 16 38 H 0.03 0.89 6.87 -51.93 -0.36 0.54 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.09 0.76 6.63 -51.91 -0.34 0.41 16 41 H 0.10 0.86 6.04 -51.92 -0.31 0.55 16 42 H 0.11 0.60 8.14 -51.91 -0.42 0.18 16 43 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.63 6.29 -51.93 -0.33 1.30 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -32.02 352.28 -7.38 -39.40 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.45 Total: 3.41 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 0.36 Total: -8.92 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.46 Total: -38.73 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.46 Total: -2.65 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.02 -7.38 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.389 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds