Wall clock time and date at job start Tue Mar 31 2020 14:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46633 * 2 1 4 4 C 1.52995 * 109.47188 * 306.94563 * 3 2 1 5 5 C 1.53005 * 109.46944 * 186.94794 * 3 2 1 6 6 N 1.46495 * 109.47422 * 66.94799 * 3 2 1 7 7 C 1.46504 * 120.00076 * 243.93177 * 6 3 2 8 8 C 1.50699 * 109.46962 * 269.99714 * 7 6 3 9 9 H 1.08001 * 120.00259 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99781 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99969 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00260 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46884 * 90.00040 * 12 10 8 14 14 H 1.48499 * 109.47559 * 210.00327 * 12 10 8 15 15 H 1.48501 * 109.46837 * 330.00148 * 12 10 8 16 16 C 1.34783 * 119.99932 * 63.93195 * 6 3 2 17 17 O 1.21801 * 119.99863 * 178.17185 * 16 6 3 18 18 C 1.41624 * 120.00073 * 358.44292 * 16 6 3 19 19 O 1.35284 * 126.01096 * 7.08497 * 18 16 6 20 20 C 1.34152 * 109.30904 * 179.86366 * 19 18 16 21 21 S 1.76199 * 125.61210 * 180.16035 * 20 19 18 22 22 C 1.80998 * 100.00120 * 0.28586 * 21 20 19 23 23 C 1.36519 * 108.77510 * 0.40061 * 20 19 18 24 24 C 1.38001 * 126.01265 * 187.39664 * 18 16 6 25 25 C 1.50702 * 126.62132 * 359.97438 * 24 18 16 26 26 H 1.08999 * 109.46553 * 60.00643 * 1 2 3 27 27 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47481 * 300.00381 * 1 2 3 29 29 H 1.08996 * 109.47819 * 240.00020 * 2 1 3 30 30 H 1.09005 * 109.47174 * 119.99053 * 2 1 3 31 31 H 1.08995 * 109.47486 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47174 * 299.99872 * 4 3 2 33 33 H 1.08994 * 109.47532 * 59.99981 * 4 3 2 34 34 H 1.09004 * 109.46888 * 260.83399 * 5 3 2 35 35 H 1.09001 * 109.46887 * 20.82590 * 5 3 2 36 36 H 1.08993 * 109.47398 * 140.83127 * 5 3 2 37 37 H 1.08999 * 109.46963 * 29.99963 * 7 6 3 38 38 H 1.08996 * 109.46851 * 150.00161 * 7 6 3 39 39 H 0.96995 * 119.99688 * 179.97438 * 11 10 8 40 40 H 1.09007 * 109.46961 * 299.99782 * 22 21 20 41 41 H 1.09001 * 109.47234 * 59.99528 * 22 21 20 42 42 H 1.09003 * 109.47701 * 180.02562 * 22 21 20 43 43 H 1.08001 * 126.41031 * 179.75356 * 23 20 19 44 44 H 1.08995 * 109.47322 * 90.00675 * 25 24 18 45 45 H 1.09001 * 109.46774 * 209.99996 * 25 24 18 46 46 H 1.08995 * 109.47448 * 329.99891 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3924 2.2124 -1.1528 5 6 3.5600 1.4462 -0.1745 6 7 1.6928 2.0833 1.2709 7 6 0.7742 3.2245 1.2890 8 6 1.5591 4.5033 1.1483 9 1 2.6344 4.4693 1.0543 10 6 0.9041 5.7165 1.1386 11 7 1.5890 6.8325 1.0152 12 14 -0.9559 5.7752 1.3005 13 1 -1.3250 5.8688 2.7358 14 1 -1.4786 6.9617 0.5766 15 1 -1.5426 4.5417 0.7178 16 6 2.2184 1.6229 2.4234 17 8 1.9561 2.1762 3.4763 18 6 3.0803 0.4992 2.4095 19 8 3.5632 -0.1193 1.3075 20 6 4.3480 -1.1414 1.6804 21 16 5.1995 -2.2322 0.5897 22 6 4.6928 -1.5412 -1.0047 23 6 4.3740 -1.2006 3.0441 24 6 3.5706 -0.1611 3.5177 25 6 3.2926 0.1748 4.9603 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.7560 3.2399 -1.1531 32 1 1.6508 1.7357 -2.0984 33 1 0.3096 2.2098 -1.0286 34 1 4.0370 1.5697 0.7978 35 1 3.8770 0.5020 -0.6174 36 1 3.8487 2.2693 -0.8281 37 1 0.0701 3.1373 0.4616 38 1 0.2274 3.2357 2.2319 39 1 1.1282 7.6860 1.0080 40 1 3.6072 -1.5863 -1.0916 41 1 5.0199 -0.5036 -1.0714 42 1 5.1458 -2.1180 -1.8111 43 1 4.9147 -1.9173 3.6444 44 1 2.4101 -0.3693 5.2965 45 1 4.1494 -0.1098 5.5711 46 1 3.1176 1.2462 5.0567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598834605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:53 Heat of formation + Delta-G solvation = 3.812583 kcal Electronic energy + Delta-G solvation = -28214.311639 eV Core-core repulsion = 24619.398012 eV Total energy + Delta-G solvation = -3594.913626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.06263 -40.94025 -38.71911 -35.29003 -35.12599 -33.71196 -32.13418 -31.38341 -30.23985 -30.14289 -28.38440 -27.94080 -25.02550 -24.75371 -23.36225 -22.54779 -21.59538 -19.70437 -19.13513 -18.75899 -18.07001 -17.79043 -17.14969 -16.62055 -16.15860 -15.86332 -15.52190 -15.08206 -14.86106 -14.78978 -14.65479 -14.50229 -14.35131 -14.14322 -14.09348 -13.66593 -13.47888 -13.33675 -13.29349 -12.95189 -12.82619 -12.68792 -12.65908 -12.40981 -12.39167 -12.09780 -12.02076 -11.85716 -11.72488 -11.57124 -11.38538 -10.81221 -10.80318 -10.73128 -10.30307 -9.41823 -8.36293 -8.31933 -6.35312 -0.15419 0.12722 0.93467 1.22439 1.30610 1.35048 1.42628 2.06865 2.29626 2.30826 2.46807 3.01784 3.69405 3.71560 3.76756 3.94900 4.05712 4.16290 4.17993 4.27073 4.34673 4.47409 4.54796 4.58834 4.59259 4.67620 4.75687 4.76956 4.79096 4.87430 4.91134 4.92649 4.96945 5.03368 5.12631 5.15465 5.20259 5.28982 5.36107 5.39944 5.44675 5.51582 5.65322 5.77021 6.26264 6.62619 6.65018 7.17566 7.31855 8.84911 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.004912 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.426592 B = 5698.779447 C = 6430.656700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.162 3.838 4 C -0.149 4.149 5 C -0.157 4.157 6 N -0.578 5.578 7 C 0.226 3.774 8 C -0.519 4.519 9 H 0.025 0.975 10 C 0.015 3.985 11 N -0.945 5.945 12 Si 0.939 3.061 13 H -0.277 1.277 14 H -0.275 1.275 15 H -0.238 1.238 16 C 0.580 3.420 17 O -0.572 6.572 18 C -0.114 4.114 19 O -0.117 6.117 20 C -0.025 4.025 21 S 0.013 5.987 22 C -0.174 4.174 23 C -0.197 4.197 24 C -0.070 4.070 25 C -0.095 4.095 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.014 0.986 39 H 0.267 0.733 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.182 0.818 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -23.519 -5.788 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.078 3.922 4 C -0.206 4.206 5 C -0.214 4.214 6 N -0.308 5.308 7 C 0.104 3.896 8 C -0.558 4.558 9 H 0.043 0.957 10 C -0.183 4.183 11 N -0.585 5.585 12 Si 0.762 3.238 13 H -0.203 1.203 14 H -0.200 1.200 15 H -0.161 1.161 16 C 0.371 3.629 17 O -0.456 6.456 18 C -0.169 4.169 19 O -0.014 6.014 20 C -0.188 4.188 21 S 0.251 5.749 22 C -0.342 4.342 23 C -0.223 4.223 24 C -0.074 4.074 25 C -0.152 4.152 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.159 0.841 43 H 0.200 0.800 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.653 -23.906 -5.513 24.971 hybrid contribution -1.266 2.193 0.335 2.554 sum 3.387 -21.714 -5.178 22.578 Atomic orbital electron populations 1.21835 0.95517 1.02043 1.01494 1.22376 0.96570 0.94291 1.03793 1.20723 0.95125 0.93264 0.83057 1.22185 1.00994 1.00274 0.97187 1.22769 0.94560 1.02768 1.01264 1.48114 1.45251 1.31130 1.06276 1.19399 0.89637 0.83530 0.97004 1.21386 0.93699 0.90981 1.49719 0.95675 1.25748 1.03600 0.94827 0.94135 1.70048 1.38065 0.98437 1.51984 0.85838 0.79747 0.79345 0.78837 1.20283 1.19965 1.16134 1.15733 0.80473 0.82414 0.84286 1.90785 1.62956 1.59921 1.31892 1.20643 1.08951 1.01490 0.85792 1.85584 1.49770 1.34955 1.31109 1.25592 0.99607 0.94555 0.99053 1.85833 1.57961 1.33663 0.97448 1.24182 1.07186 1.05975 0.96861 1.21532 1.05895 1.02588 0.92333 1.21075 0.95657 0.94292 0.96423 1.20461 1.02989 1.02563 0.89154 0.91331 0.91076 0.95405 0.88179 0.91091 0.93409 0.88606 0.91747 0.93896 0.87917 0.93174 0.92534 0.96771 0.92387 0.88146 0.88776 0.84060 0.80044 0.89999 0.88725 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.26 71.98 0.67 -3.17 16 2 C -0.13 -3.39 4.17 30.60 0.13 -3.26 16 3 C 0.16 5.34 0.74 3.61 0.00 5.35 16 4 C -0.15 -4.76 6.52 71.98 0.47 -4.29 16 5 C -0.16 -4.88 7.59 71.98 0.55 -4.33 16 6 N -0.58 -25.07 1.94 -789.47 -1.54 -26.61 16 7 C 0.23 11.28 3.59 85.63 0.31 11.59 16 8 C -0.52 -30.84 9.02 25.60 0.23 -30.61 16 9 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 10 C 0.01 0.88 5.47 84.65 0.46 1.34 16 11 N -0.94 -60.23 13.96 21.45 0.30 -59.93 16 12 Si 0.94 44.85 27.47 68.60 1.88 46.74 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 16 C 0.58 26.22 6.81 85.08 0.58 26.80 16 17 O -0.57 -30.17 14.20 -4.67 -0.07 -30.23 16 18 C -0.11 -4.13 4.66 23.05 0.11 -4.02 16 19 O -0.12 -3.31 1.72 -11.00 -0.02 -3.33 16 20 C -0.02 -0.58 7.28 67.42 0.49 -0.09 16 21 S 0.01 0.21 22.90 -56.49 -1.29 -1.09 16 22 C -0.17 -1.94 8.99 113.37 1.02 -0.93 16 23 C -0.20 -4.82 10.77 22.21 0.24 -4.58 16 24 C -0.07 -2.20 6.21 -19.58 -0.12 -2.33 16 25 C -0.10 -2.79 9.87 71.24 0.70 -2.09 16 26 H 0.07 1.59 6.33 -2.39 -0.02 1.57 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 0.85 7.81 -2.39 -0.02 0.84 16 29 H 0.10 1.83 6.58 -2.39 -0.02 1.81 16 30 H 0.07 2.00 4.43 -9.29 -0.04 1.96 16 31 H 0.05 1.90 7.06 -2.39 -0.02 1.88 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.03 4.91 -2.39 -0.01 2.02 16 34 H 0.04 1.59 4.97 -2.39 -0.01 1.58 16 35 H 0.10 2.30 2.74 -2.39 -0.01 2.29 16 36 H 0.05 1.64 7.71 -2.39 -0.02 1.62 16 37 H 0.06 2.59 4.86 -2.39 -0.01 2.58 16 38 H 0.01 0.77 6.87 -2.39 -0.02 0.75 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.10 1.07 6.63 -2.39 -0.02 1.06 16 41 H 0.09 1.23 6.04 -2.39 -0.01 1.22 16 42 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.06 2.20 6.29 -2.39 -0.02 2.18 16 Total: -1.00 -77.07 352.28 6.02 -71.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.92 Total: 18.03 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 5.83 Total: -14.63 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.24 Total: -86.54 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.09 Total: -33.56 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.29 Total: -1.09 kcal Total: -77.07 6.02 -71.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds