Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47408 * 2 1 4 4 C 1.53005 * 109.46787 * 291.18408 * 3 2 1 5 5 C 1.53000 * 109.47383 * 171.18707 * 3 2 1 6 6 N 1.46499 * 109.47190 * 51.18427 * 3 2 1 7 7 C 1.46500 * 119.99936 * 213.99809 * 6 3 2 8 8 C 1.50704 * 109.46794 * 268.01647 * 7 6 3 9 9 H 1.08004 * 119.99975 * 4.89566 * 8 7 6 10 10 C 1.37873 * 120.00137 * 184.90343 * 8 7 6 11 11 N 1.31522 * 119.99837 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00384 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47124 * 89.99340 * 12 10 8 14 14 H 1.48494 * 109.47480 * 209.99979 * 12 10 8 15 15 H 1.48510 * 109.46847 * 329.99773 * 12 10 8 16 16 C 1.34775 * 119.99757 * 33.99167 * 6 3 2 17 17 O 1.21706 * 119.99946 * 185.52274 * 16 6 3 18 18 C 1.46580 * 120.00436 * 5.52520 * 16 6 3 19 19 C 1.36644 * 125.46254 * 253.37370 * 18 16 6 20 20 C 1.37472 * 113.29781 * 179.97438 * 19 18 16 21 21 C 1.50702 * 122.44576 * 179.97438 * 20 19 18 22 22 O 1.42892 * 109.47365 * 89.99631 * 21 20 19 23 23 C 1.42907 * 114.00274 * 179.97438 * 22 21 20 24 24 C 1.33812 * 115.10367 * 359.97438 * 20 19 18 25 25 S 1.70619 * 110.95115 * 359.76252 * 24 20 19 26 26 H 1.09001 * 109.47196 * 66.54857 * 1 2 3 27 27 H 1.09001 * 109.47144 * 186.54937 * 1 2 3 28 28 H 1.09003 * 109.47194 * 306.55134 * 1 2 3 29 29 H 1.09002 * 109.46946 * 239.99608 * 2 1 3 30 30 H 1.09007 * 109.47065 * 119.99798 * 2 1 3 31 31 H 1.09005 * 109.47082 * 184.35014 * 4 3 2 32 32 H 1.08994 * 109.46995 * 304.35303 * 4 3 2 33 33 H 1.09004 * 109.46774 * 64.35665 * 4 3 2 34 34 H 1.08998 * 109.47006 * 226.91642 * 5 3 2 35 35 H 1.09000 * 109.46762 * 346.91459 * 5 3 2 36 36 H 1.08999 * 109.47335 * 106.91393 * 5 3 2 37 37 H 1.08995 * 109.47284 * 28.01522 * 7 6 3 38 38 H 1.08998 * 109.46985 * 148.02065 * 7 6 3 39 39 H 0.96996 * 119.99876 * 180.02562 * 11 10 8 40 40 H 1.08008 * 123.34843 * 359.97438 * 19 18 16 41 41 H 1.09001 * 109.46881 * 209.99674 * 21 20 19 42 42 H 1.09005 * 109.47285 * 329.99423 * 21 20 19 43 43 H 1.08999 * 109.47207 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46668 * 300.00066 * 23 22 21 45 45 H 1.08999 * 109.46817 * 59.99753 * 23 22 21 46 46 H 1.07995 * 124.52321 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7186 2.0970 -1.3451 5 6 3.5540 1.4481 0.2210 6 7 1.3866 2.1915 1.0762 7 6 1.0766 3.6120 0.8964 8 6 2.2218 4.4452 1.4117 9 1 3.1255 3.9657 1.7579 10 6 2.1158 5.8195 1.4411 11 7 1.0155 6.4034 1.0191 12 14 3.5355 6.8523 2.0791 13 1 4.4432 7.1946 0.9547 14 1 3.0065 8.1002 2.6858 15 1 4.2858 6.0830 3.1042 16 6 1.0706 1.5737 2.2316 17 8 0.4388 2.1672 3.0859 18 6 1.4878 0.1871 2.4593 19 6 0.6639 -0.9028 2.4353 20 6 1.3197 -2.0856 2.6819 21 6 0.6092 -3.4144 2.7049 22 8 0.6159 -3.9810 1.3932 23 6 -0.0359 -5.2497 1.3046 24 6 2.6350 -1.9708 2.8998 25 16 3.1302 -0.3412 2.7988 26 1 -0.3633 0.4090 -0.9428 27 1 -0.3633 -1.0210 0.1172 28 1 -0.3634 0.6120 0.8256 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.1492 3.0980 -1.3742 32 1 2.1399 1.4966 -2.1512 33 1 0.6375 2.1629 -1.4679 34 1 3.8077 2.1888 0.9793 35 1 3.8761 0.4617 0.5545 36 1 4.0567 1.6978 -0.7134 37 1 0.9241 3.8194 -0.1627 38 1 0.1702 3.8588 1.4492 39 1 0.9411 7.3703 1.0395 40 1 -0.3969 -0.8410 2.2420 41 1 1.1195 -4.0873 3.3940 42 1 -0.4202 -3.2704 3.0332 43 1 0.0128 -5.6123 0.2778 44 1 0.4615 -5.9605 1.9645 45 1 -1.0786 -5.1441 1.6040 46 1 3.2956 -2.7995 3.1075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598834951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = -16.309905 kcal Electronic energy + Delta-G solvation = -27348.310769 eV Core-core repulsion = 23752.524566 eV Total energy + Delta-G solvation = -3595.786203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47303 -38.61381 -36.97504 -36.62217 -33.33303 -31.70865 -31.06134 -29.43771 -28.06542 -27.41542 -26.60427 -25.92505 -24.23137 -23.13763 -22.26038 -20.64214 -19.09458 -18.77695 -16.96274 -16.57848 -16.45672 -16.16327 -15.70548 -15.48834 -15.12223 -14.64801 -14.46534 -14.28722 -13.58185 -13.49690 -13.04050 -13.01601 -12.68082 -12.44481 -12.36623 -12.18781 -11.96638 -11.88588 -11.78768 -11.55743 -11.34616 -11.25752 -11.10700 -10.92931 -10.76192 -10.63261 -10.44280 -10.34256 -10.04811 -9.96018 -9.88330 -9.51101 -9.10223 -8.42812 -8.37036 -8.15760 -7.63006 -6.02236 -4.06504 0.89167 1.50900 2.03390 2.49078 3.30895 3.37892 3.41430 3.53473 3.89861 3.93547 4.46308 4.79448 4.86561 5.02658 5.08403 5.10587 5.15945 5.23190 5.28793 5.32253 5.34905 5.43323 5.48553 5.59368 5.67189 5.89628 5.99368 6.01121 6.06475 6.20926 6.23607 6.30651 6.36254 6.38536 6.43897 6.46033 6.58562 6.78300 6.81430 6.94248 7.13131 7.48765 7.57536 7.94564 8.25060 8.40329 8.89186 9.05588 9.58100 11.05749 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.004024 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.737629 B = 6956.166672 C = 7280.657395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.167 3.833 4 C -0.148 4.148 5 C -0.169 4.169 6 N -0.574 5.574 7 C 0.240 3.760 8 C -0.523 4.523 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.579 3.421 17 O -0.527 6.527 18 C -0.209 4.209 19 C -0.094 4.094 20 C -0.108 4.108 21 C 0.125 3.875 22 O -0.382 6.382 23 C 0.031 3.969 24 C -0.250 4.250 25 S 0.227 5.773 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.148 0.852 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -21.434 -1.491 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.227 4.227 6 N -0.305 5.305 7 C 0.121 3.879 8 C -0.562 4.562 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.363 3.637 17 O -0.405 6.405 18 C -0.330 4.330 19 C -0.125 4.125 20 C -0.122 4.122 21 C 0.046 3.954 22 O -0.301 6.301 23 C -0.066 4.066 24 C -0.387 4.387 25 S 0.495 5.505 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.165 0.835 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.977 -20.057 -1.071 20.305 hybrid contribution -0.680 -0.366 0.338 0.843 sum 2.297 -20.422 -0.734 20.564 Atomic orbital electron populations 1.21974 0.95822 1.00992 1.01895 1.22777 0.96897 0.95905 1.03775 1.20365 0.92339 0.90983 0.88218 1.22130 1.02089 1.01831 0.94441 1.22612 0.95052 1.02052 1.03026 1.48351 1.57162 1.12440 1.12571 1.19446 0.97573 0.72863 0.98014 1.21426 1.00956 0.91143 1.42664 0.92413 1.24915 0.95942 0.97795 0.95327 1.69931 1.26084 1.10114 1.47084 0.86547 0.82303 0.79821 0.79074 1.20662 1.21143 1.19896 1.16800 0.80532 0.83385 0.82978 1.90828 1.40082 1.65510 1.44095 1.24711 0.97840 0.99096 1.11367 1.20415 1.01011 0.89529 1.01498 1.18238 0.93143 0.94759 1.06061 1.20993 0.98850 0.90756 0.84779 1.88000 1.78300 1.34646 1.29204 1.22742 0.96229 0.85164 1.02485 1.25100 0.99610 1.03005 1.10992 1.83405 1.06205 0.96537 1.64317 0.93008 0.92683 0.92432 0.91557 0.89255 0.90520 0.92434 0.92245 0.90624 0.92545 0.92013 0.93998 0.93699 0.92767 0.83485 0.92590 0.92320 0.89650 0.94242 0.94063 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.26 37.16 0.27 -1.99 16 2 C -0.16 -2.33 3.99 -26.73 -0.11 -2.44 16 3 C 0.17 2.87 0.61 -131.82 -0.08 2.79 16 4 C -0.15 -2.42 6.65 37.16 0.25 -2.18 16 5 C -0.17 -2.73 8.63 37.16 0.32 -2.41 16 6 N -0.57 -12.27 1.73 -161.74 -0.28 -12.55 16 7 C 0.24 6.17 4.81 -5.19 -0.02 6.15 16 8 C -0.52 -14.52 9.27 -34.44 -0.32 -14.84 16 9 H 0.06 1.59 6.57 -52.48 -0.34 1.25 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 12 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 16 C 0.58 12.67 5.53 -12.90 -0.07 12.60 16 17 O -0.53 -13.90 16.69 5.18 0.09 -13.81 16 18 C -0.21 -3.62 3.22 -36.80 -0.12 -3.74 16 19 C -0.09 -1.41 6.44 -40.44 -0.26 -1.67 16 20 C -0.11 -1.37 5.12 -106.45 -0.55 -1.91 16 21 C 0.12 1.29 6.18 36.01 0.22 1.51 16 22 O -0.38 -4.28 10.69 -35.23 -0.38 -4.65 16 23 C 0.03 0.23 11.01 101.05 1.11 1.34 16 24 C -0.25 -2.99 10.50 29.18 0.31 -2.68 16 25 S 0.23 3.21 19.29 -107.50 -2.07 1.13 16 26 H 0.05 0.75 7.10 -51.93 -0.37 0.38 16 27 H 0.05 0.75 7.45 -51.93 -0.39 0.36 16 28 H 0.06 1.01 4.74 -51.93 -0.25 0.76 16 29 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.09 1.33 2.00 -48.29 -0.10 1.24 16 31 H 0.08 1.42 7.06 -51.93 -0.37 1.05 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 33 H 0.06 0.99 6.87 -51.93 -0.36 0.63 16 34 H 0.07 1.43 6.52 -51.93 -0.34 1.09 16 35 H 0.06 0.79 5.68 -51.93 -0.29 0.50 16 36 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 37 H 0.04 1.07 5.59 -51.93 -0.29 0.78 16 38 H 0.04 1.33 7.41 -51.93 -0.38 0.94 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.15 2.14 6.71 -52.48 -0.35 1.79 16 41 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 42 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -32.56 361.86 -7.36 -39.92 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.74 Total: 1.17 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.86 Total: -7.80 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.46 Total: -38.16 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.29 Total: -18.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.07 Total: 1.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.56 -7.36 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.609 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds