Wall clock time and date at job start Tue Mar 31 2020 14:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47408 * 2 1 4 4 C 1.53005 * 109.46787 * 291.18408 * 3 2 1 5 5 C 1.53000 * 109.47383 * 171.18707 * 3 2 1 6 6 N 1.46499 * 109.47190 * 51.18427 * 3 2 1 7 7 C 1.46500 * 119.99936 * 213.99809 * 6 3 2 8 8 C 1.50704 * 109.46794 * 268.01647 * 7 6 3 9 9 H 1.08004 * 119.99975 * 4.89566 * 8 7 6 10 10 C 1.37873 * 120.00137 * 184.90343 * 8 7 6 11 11 N 1.31522 * 119.99837 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00384 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47124 * 89.99340 * 12 10 8 14 14 H 1.48494 * 109.47480 * 209.99979 * 12 10 8 15 15 H 1.48510 * 109.46847 * 329.99773 * 12 10 8 16 16 C 1.34775 * 119.99757 * 33.99167 * 6 3 2 17 17 O 1.21706 * 119.99946 * 185.52274 * 16 6 3 18 18 C 1.46580 * 120.00436 * 5.52520 * 16 6 3 19 19 C 1.36644 * 125.46254 * 253.37370 * 18 16 6 20 20 C 1.37472 * 113.29781 * 179.97438 * 19 18 16 21 21 C 1.50702 * 122.44576 * 179.97438 * 20 19 18 22 22 O 1.42892 * 109.47365 * 89.99631 * 21 20 19 23 23 C 1.42907 * 114.00274 * 179.97438 * 22 21 20 24 24 C 1.33812 * 115.10367 * 359.97438 * 20 19 18 25 25 S 1.70619 * 110.95115 * 359.76252 * 24 20 19 26 26 H 1.09001 * 109.47196 * 66.54857 * 1 2 3 27 27 H 1.09001 * 109.47144 * 186.54937 * 1 2 3 28 28 H 1.09003 * 109.47194 * 306.55134 * 1 2 3 29 29 H 1.09002 * 109.46946 * 239.99608 * 2 1 3 30 30 H 1.09007 * 109.47065 * 119.99798 * 2 1 3 31 31 H 1.09005 * 109.47082 * 184.35014 * 4 3 2 32 32 H 1.08994 * 109.46995 * 304.35303 * 4 3 2 33 33 H 1.09004 * 109.46774 * 64.35665 * 4 3 2 34 34 H 1.08998 * 109.47006 * 226.91642 * 5 3 2 35 35 H 1.09000 * 109.46762 * 346.91459 * 5 3 2 36 36 H 1.08999 * 109.47335 * 106.91393 * 5 3 2 37 37 H 1.08995 * 109.47284 * 28.01522 * 7 6 3 38 38 H 1.08998 * 109.46985 * 148.02065 * 7 6 3 39 39 H 0.96996 * 119.99876 * 180.02562 * 11 10 8 40 40 H 1.08008 * 123.34843 * 359.97438 * 19 18 16 41 41 H 1.09001 * 109.46881 * 209.99674 * 21 20 19 42 42 H 1.09005 * 109.47285 * 329.99423 * 21 20 19 43 43 H 1.08999 * 109.47207 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46668 * 300.00066 * 23 22 21 45 45 H 1.08999 * 109.46817 * 59.99753 * 23 22 21 46 46 H 1.07995 * 124.52321 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7186 2.0970 -1.3451 5 6 3.5540 1.4481 0.2210 6 7 1.3866 2.1915 1.0762 7 6 1.0766 3.6120 0.8964 8 6 2.2218 4.4452 1.4117 9 1 3.1255 3.9657 1.7579 10 6 2.1158 5.8195 1.4411 11 7 1.0155 6.4034 1.0191 12 14 3.5355 6.8523 2.0791 13 1 4.4432 7.1946 0.9547 14 1 3.0065 8.1002 2.6858 15 1 4.2858 6.0830 3.1042 16 6 1.0706 1.5737 2.2316 17 8 0.4388 2.1672 3.0859 18 6 1.4878 0.1871 2.4593 19 6 0.6639 -0.9028 2.4353 20 6 1.3197 -2.0856 2.6819 21 6 0.6092 -3.4144 2.7049 22 8 0.6159 -3.9810 1.3932 23 6 -0.0359 -5.2497 1.3046 24 6 2.6350 -1.9708 2.8998 25 16 3.1302 -0.3412 2.7988 26 1 -0.3633 0.4090 -0.9428 27 1 -0.3633 -1.0210 0.1172 28 1 -0.3634 0.6120 0.8256 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.1492 3.0980 -1.3742 32 1 2.1399 1.4966 -2.1512 33 1 0.6375 2.1629 -1.4679 34 1 3.8077 2.1888 0.9793 35 1 3.8761 0.4617 0.5545 36 1 4.0567 1.6978 -0.7134 37 1 0.9241 3.8194 -0.1627 38 1 0.1702 3.8588 1.4492 39 1 0.9411 7.3703 1.0395 40 1 -0.3969 -0.8410 2.2420 41 1 1.1195 -4.0873 3.3940 42 1 -0.4202 -3.2704 3.0332 43 1 0.0128 -5.6123 0.2778 44 1 0.4615 -5.9605 1.9645 45 1 -1.0786 -5.1441 1.6040 46 1 3.2956 -2.7995 3.1075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598834951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:01 Heat of formation + Delta-G solvation = -36.697038 kcal Electronic energy + Delta-G solvation = -27349.194821 eV Core-core repulsion = 23752.524566 eV Total energy + Delta-G solvation = -3596.670255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91990 -39.64830 -38.27883 -37.90194 -35.30312 -33.44207 -32.41962 -30.68035 -29.47156 -28.55398 -28.15509 -26.66215 -25.72025 -24.43550 -24.00155 -22.06554 -20.31768 -20.00927 -18.64894 -18.20408 -17.47289 -17.31539 -17.23279 -16.43086 -16.37271 -16.14118 -15.98047 -15.68553 -14.95735 -14.86169 -14.41278 -14.20895 -14.02315 -13.95128 -13.60642 -13.57525 -13.42699 -13.10313 -12.92507 -12.81920 -12.80539 -12.69727 -12.52847 -12.37283 -12.19354 -12.18050 -12.03340 -11.79817 -11.67472 -11.36874 -11.29057 -10.82831 -10.60146 -10.54496 -9.55910 -9.43302 -9.28593 -8.20127 -6.33430 -0.23585 0.30482 0.97038 1.35504 1.38594 1.42885 1.48642 1.92152 2.26626 2.44995 3.09478 3.18047 3.55580 3.79989 4.01179 4.03802 4.11038 4.17961 4.31223 4.41007 4.49454 4.57571 4.61215 4.64515 4.67010 4.75809 4.78064 4.80985 4.90192 4.94249 4.95719 5.03132 5.08615 5.15623 5.19671 5.21725 5.31373 5.32249 5.37988 5.42661 5.52680 5.64852 5.88219 6.08815 6.29565 6.67472 6.78059 7.25056 7.41163 8.87240 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.004024 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.737629 B = 6956.166672 C = 7280.657395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.157 3.843 4 C -0.144 4.144 5 C -0.164 4.164 6 N -0.574 5.574 7 C 0.256 3.744 8 C -0.534 4.534 9 H 0.055 0.945 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.963 3.037 13 H -0.263 1.263 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.578 3.422 17 O -0.593 6.593 18 C -0.256 4.256 19 C -0.074 4.074 20 C -0.118 4.118 21 C 0.126 3.874 22 O -0.406 6.406 23 C 0.025 3.975 24 C -0.218 4.218 25 S 0.235 5.765 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.039 0.961 38 H -0.007 1.007 39 H 0.266 0.734 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -24.863 -1.967 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.073 3.927 4 C -0.201 4.201 5 C -0.222 4.222 6 N -0.304 5.304 7 C 0.136 3.864 8 C -0.572 4.572 9 H 0.073 0.927 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.188 1.188 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.365 3.635 17 O -0.475 6.475 18 C -0.375 4.375 19 C -0.106 4.106 20 C -0.131 4.131 21 C 0.047 3.953 22 O -0.326 6.326 23 C -0.071 4.071 24 C -0.355 4.355 25 S 0.504 5.496 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.011 0.989 39 H 0.074 0.926 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.221 -23.528 -1.588 24.153 hybrid contribution -1.423 0.581 0.476 1.609 sum 3.798 -22.947 -1.112 23.286 Atomic orbital electron populations 1.21906 0.96207 1.01321 1.00653 1.22753 0.96482 0.94138 1.05289 1.20752 0.92960 0.92028 0.86942 1.22109 1.01548 1.01039 0.95429 1.22555 0.94139 1.02499 1.03018 1.48318 1.57118 1.10992 1.13934 1.18907 0.95040 0.75855 0.96631 1.21678 1.01201 0.91806 1.42545 0.92650 1.25814 0.98635 0.99116 0.95472 1.70061 1.28079 1.10506 1.48156 0.85488 0.79125 0.77822 0.78852 1.18775 1.20865 1.19702 1.17406 0.79104 0.85109 0.81908 1.90765 1.42967 1.67786 1.46019 1.24154 1.00507 0.96759 1.16123 1.20557 1.00722 0.89886 0.99435 1.18406 0.93520 0.95033 1.06155 1.21043 0.99241 0.89765 0.85202 1.87944 1.78918 1.36209 1.29522 1.22920 0.96562 0.84087 1.03525 1.25529 0.99712 1.02503 1.07759 1.83337 1.03929 0.98056 1.64328 0.92771 0.90925 0.95678 0.88896 0.88690 0.93203 0.88560 0.93209 0.93793 0.90110 0.90211 0.94283 0.98864 0.92559 0.83997 0.90078 0.91807 0.88846 0.92676 0.93447 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 7.26 71.98 0.52 -3.74 16 2 C -0.15 -4.21 3.99 30.59 0.12 -4.08 16 3 C 0.16 5.39 0.61 3.61 0.00 5.39 16 4 C -0.14 -4.70 6.65 71.98 0.48 -4.22 16 5 C -0.16 -5.12 8.63 71.98 0.62 -4.50 16 6 N -0.57 -25.82 1.73 -783.83 -1.36 -27.18 16 7 C 0.26 14.17 4.81 85.63 0.41 14.58 16 8 C -0.53 -31.05 9.27 25.60 0.24 -30.81 16 9 H 0.06 3.18 6.57 -2.91 -0.02 3.16 16 10 C 0.01 0.49 5.46 84.65 0.46 0.95 16 11 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 12 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 16 C 0.58 26.72 5.53 86.42 0.48 27.20 16 17 O -0.59 -33.81 16.69 -4.37 -0.07 -33.89 16 18 C -0.26 -8.84 3.22 24.07 0.08 -8.76 16 19 C -0.07 -2.14 6.44 21.72 0.14 -2.00 16 20 C -0.12 -2.62 5.12 -21.05 -0.11 -2.73 16 21 C 0.13 2.12 6.18 71.24 0.44 2.56 16 22 O -0.41 -7.57 10.69 -148.98 -1.59 -9.16 16 23 C 0.03 0.29 11.01 113.37 1.25 1.54 16 24 C -0.22 -4.31 10.50 66.81 0.70 -3.61 16 25 S 0.23 6.19 19.29 -56.49 -1.09 5.10 16 26 H 0.05 1.55 7.10 -2.39 -0.02 1.53 16 27 H 0.07 1.87 7.45 -2.39 -0.02 1.85 16 28 H 0.02 0.90 4.74 -2.39 -0.01 0.89 16 29 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 30 H 0.10 2.63 2.00 -11.87 -0.02 2.61 16 31 H 0.05 1.88 7.06 -2.38 -0.02 1.87 16 32 H 0.10 2.36 8.13 -2.39 -0.02 2.35 16 33 H 0.05 1.69 6.87 -2.38 -0.02 1.68 16 34 H 0.04 1.66 6.52 -2.39 -0.02 1.64 16 35 H 0.08 2.08 5.68 -2.39 -0.01 2.06 16 36 H 0.08 2.17 7.64 -2.39 -0.02 2.15 16 37 H 0.04 2.15 5.59 -2.39 -0.01 2.13 16 38 H -0.01 -0.44 7.41 -2.39 -0.02 -0.46 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.14 4.15 6.71 -2.91 -0.02 4.13 16 41 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 42 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -76.46 361.86 5.01 -71.45 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.97 Total: 15.05 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.84 Total: -12.24 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.07 Total: -83.94 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.66 Total: -43.05 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.09 Total: 5.10 kcal Total: -76.46 5.01 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.753 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds