Wall clock time and date at job start Tue Mar 31 2020 14:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33659 * 125.66635 * 2 1 4 4 C 1.34567 * 110.86927 * 180.28077 * 3 2 1 5 5 C 1.47840 * 125.58187 * 179.72863 * 4 3 2 6 6 C 1.39570 * 120.14145 * 179.72609 * 5 4 3 7 7 C 1.37964 * 119.85463 * 179.71802 * 6 5 4 8 8 C 1.38362 * 120.14226 * 0.55112 * 7 6 5 9 9 C 1.38357 * 120.29021 * 359.72505 * 8 7 6 10 10 C 1.37968 * 120.14335 * 359.97438 * 9 8 7 11 11 C 1.35620 * 108.83041 * 359.72525 * 4 3 2 12 12 C 1.36571 * 125.66813 * 179.80310 * 2 1 3 13 13 C 1.47428 * 127.10835 * 0.02562 * 12 2 1 14 14 O 1.21606 * 119.99892 * 356.60361 * 13 12 2 15 15 N 1.34779 * 120.00000 * 176.32639 * 13 12 2 16 16 C 1.46499 * 120.00007 * 185.86608 * 15 13 12 17 17 C 1.52992 * 109.47150 * 183.76175 * 16 15 13 18 18 C 1.50696 * 115.55564 * 306.58597 * 17 16 15 19 19 H 1.08003 * 120.00363 * 144.98579 * 18 17 16 20 20 C 1.37883 * 119.99697 * 324.99144 * 18 17 16 21 21 N 1.31508 * 120.00206 * 350.08517 * 20 18 17 22 22 Si 1.86805 * 119.99788 * 170.08372 * 20 18 17 23 23 H 1.48501 * 109.47049 * 60.00207 * 22 20 18 24 24 H 1.48500 * 109.46803 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47376 * 299.99925 * 22 20 18 26 26 C 1.53003 * 117.49809 * 160.91395 * 17 16 15 27 27 C 1.53007 * 117.49548 * 92.25671 * 17 16 15 28 28 H 1.09001 * 109.47382 * 270.19803 * 1 2 3 29 29 H 1.09004 * 109.47229 * 30.19315 * 1 2 3 30 30 H 1.09000 * 109.46964 * 150.19054 * 1 2 3 31 31 H 1.08003 * 120.07581 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.92883 * 180.30196 * 7 6 5 33 33 H 1.08000 * 119.85387 * 179.74302 * 8 7 6 34 34 H 1.07993 * 119.92628 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.06894 * 180.02562 * 10 9 8 36 36 H 1.08001 * 127.07299 * 180.02562 * 11 4 3 37 37 H 0.96998 * 120.00075 * 5.87347 * 15 13 12 38 38 H 1.08997 * 109.47327 * 303.76600 * 16 15 13 39 39 H 1.09011 * 109.46933 * 63.76499 * 16 15 13 40 40 H 0.97002 * 120.00544 * 185.03435 * 21 20 18 41 41 H 1.08993 * 117.49855 * 0.02562 * 26 17 16 42 42 H 1.09008 * 117.49834 * 145.02450 * 26 17 16 43 43 H 1.09000 * 117.49811 * 214.97574 * 27 17 16 44 44 H 1.08994 * 117.49879 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0859 0.0000 4 6 3.5873 0.7422 -0.0062 5 6 4.7261 1.6850 -0.0137 6 6 6.0356 1.2022 -0.0139 7 6 7.0938 2.0873 -0.0268 8 6 6.8592 3.4509 -0.0281 9 6 5.5635 3.9360 -0.0221 10 6 4.4963 3.0616 -0.0154 11 6 3.6827 -0.6106 -0.0043 12 6 2.3033 -1.1095 0.0038 13 6 1.8668 -2.5177 0.0081 14 8 0.6825 -2.7869 0.0709 15 7 2.7798 -3.5065 -0.0632 16 6 2.3430 -4.8992 -0.1885 17 6 3.5633 -5.8214 -0.1547 18 6 4.6506 -5.4975 -1.1466 19 1 5.6864 -5.6502 -0.8815 20 6 4.3231 -5.0060 -2.3925 21 7 3.0693 -5.0023 -2.7891 22 14 5.6605 -4.3455 -3.5171 23 1 6.6431 -5.4216 -3.8029 24 1 5.0522 -3.8806 -4.7895 25 1 6.3493 -3.2097 -2.8532 26 6 3.3253 -7.2962 0.1760 27 6 3.9904 -6.3784 1.2049 28 1 -0.3634 0.0036 1.0276 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3633 -0.8917 -0.5109 31 1 6.2202 0.1381 -0.0081 32 1 8.1076 1.7150 -0.0319 33 1 7.6911 4.1396 -0.0340 34 1 5.3871 5.0014 -0.0236 35 1 3.4854 3.4416 -0.0112 36 1 4.5881 -1.1995 -0.0075 37 1 3.7262 -3.2960 -0.0314 38 1 1.6773 -5.1470 0.6381 39 1 1.8144 -5.0306 -1.1328 40 1 2.8468 -4.7251 -3.6917 41 1 2.2994 -7.6094 0.3690 42 1 3.9555 -8.0321 -0.3236 43 1 5.0577 -6.5109 1.3817 44 1 3.4022 -6.0875 2.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599874577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:24 Heat of formation + Delta-G solvation = 20.201409 kcal Electronic energy + Delta-G solvation = -26866.340102 eV Core-core repulsion = 23136.693197 eV Total energy + Delta-G solvation = -3729.646905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41041 -39.12272 -38.59349 -36.64524 -33.36824 -32.78631 -32.70249 -32.18536 -31.10098 -30.29849 -26.90585 -25.88372 -25.27293 -23.41331 -22.54288 -21.91661 -21.22307 -20.45406 -19.37537 -18.87776 -17.88685 -16.54255 -16.26321 -16.16863 -15.50359 -15.23343 -14.87905 -14.82035 -14.60459 -14.11216 -13.85757 -13.63841 -13.44638 -13.16193 -13.07960 -12.91365 -12.81816 -12.67180 -12.33772 -11.80296 -11.67491 -11.50050 -11.44570 -11.18328 -11.05651 -10.84367 -10.53310 -10.29028 -9.96812 -9.67419 -9.29124 -9.21871 -9.15569 -9.07646 -8.84484 -8.27278 -7.94191 -7.75136 -6.09166 -4.20383 0.69301 1.20920 1.76450 2.41334 2.72636 3.19511 3.28023 3.28710 3.70247 3.97116 4.16855 4.27423 4.41409 4.68488 4.77094 4.88193 4.92002 5.03157 5.17334 5.22242 5.29114 5.45773 5.49633 5.53818 5.64134 5.73121 5.81012 5.89449 5.97967 6.01951 6.18240 6.27577 6.30218 6.30229 6.37854 6.48612 6.54503 6.61633 6.70984 6.74028 6.89828 7.06743 7.19967 7.26764 7.53627 7.58491 7.89545 8.29932 8.54371 8.79788 9.11914 9.40787 10.87093 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004054 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.607808 B = 6905.050772 C = 8288.805140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.070 3.930 3 O -0.173 6.173 4 C 0.011 3.989 5 C -0.006 4.006 6 C -0.100 4.100 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.107 4.107 11 C -0.152 4.152 12 C -0.223 4.223 13 C 0.577 3.423 14 O -0.564 6.564 15 N -0.678 5.678 16 C 0.163 3.837 17 C 0.038 3.962 18 C -0.502 4.502 19 H 0.061 0.939 20 C 0.078 3.922 21 N -0.866 5.866 22 Si 0.888 3.112 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.196 4.196 27 C -0.212 4.212 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.400 0.600 38 H 0.028 0.972 39 H 0.109 0.891 40 H 0.264 0.736 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 15.697 5.242 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.017 3.983 3 O -0.070 6.070 4 C -0.037 4.037 5 C -0.006 4.006 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.125 4.125 11 C -0.171 4.171 12 C -0.227 4.227 13 C 0.363 3.637 14 O -0.446 6.446 15 N -0.324 5.324 16 C 0.040 3.960 17 C 0.038 3.962 18 C -0.539 4.539 19 H 0.079 0.921 20 C -0.127 4.127 21 N -0.501 5.501 22 Si 0.716 3.284 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.234 4.234 27 C -0.250 4.250 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.178 0.822 37 H 0.235 0.765 38 H 0.046 0.954 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.110 15.870 5.108 16.805 hybrid contribution 1.402 0.116 -0.691 1.567 sum 3.512 15.986 4.416 16.953 Atomic orbital electron populations 1.20574 0.83626 1.04905 1.04141 1.22805 0.93899 0.82740 0.98843 1.83660 1.16060 1.35082 1.72235 1.20056 0.81358 0.92729 1.09518 1.17766 0.89536 0.91414 1.01853 1.21166 0.90692 1.00664 0.99242 1.21075 0.98953 0.93190 0.99983 1.21259 0.96946 0.95600 0.99995 1.21070 0.92492 0.99676 1.00407 1.21255 0.99699 0.92030 0.99487 1.22959 0.97372 0.92862 1.03934 1.21379 0.92579 0.94891 1.13849 1.17072 0.85809 0.83370 0.77409 1.90671 1.16767 1.84165 1.53035 1.45593 1.09364 1.06986 1.70471 1.21040 0.95430 0.77981 1.01551 1.19173 0.94998 0.90299 0.91763 1.20448 0.91590 1.43979 0.97904 0.92054 1.24957 0.95244 0.94785 0.97744 1.69823 1.16713 1.45710 1.17883 0.86708 0.81985 0.79618 0.80108 1.20197 1.21182 1.19939 1.22918 0.98954 0.96964 1.04576 1.22965 0.99153 1.08898 0.93940 0.89565 0.90864 0.87036 0.85033 0.85352 0.85882 0.85731 0.85507 0.82245 0.76530 0.95366 0.87293 0.92517 0.91492 0.90208 0.90639 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.85 36.00 0.35 -0.67 16 2 C 0.07 1.14 7.36 -34.91 -0.26 0.89 16 3 O -0.17 -2.69 10.25 6.68 0.07 -2.62 16 4 C 0.01 0.17 7.01 -36.59 -0.26 -0.08 16 5 C -0.01 -0.07 5.87 -104.98 -0.62 -0.69 16 6 C -0.10 -1.18 9.55 -39.19 -0.37 -1.56 16 7 C -0.11 -1.13 10.03 -39.64 -0.40 -1.53 16 8 C -0.12 -1.08 10.04 -39.49 -0.40 -1.48 16 9 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 10 C -0.11 -1.22 9.71 -39.19 -0.38 -1.60 16 11 C -0.15 -2.50 9.93 -37.11 -0.37 -2.87 16 12 C -0.22 -4.11 6.30 -103.35 -0.65 -4.76 16 13 C 0.58 12.37 7.81 -12.52 -0.10 12.27 16 14 O -0.56 -13.14 14.85 5.27 0.08 -13.06 16 15 N -0.68 -14.82 5.27 -61.38 -0.32 -15.14 16 16 C 0.16 3.85 4.74 -4.05 -0.02 3.83 16 17 C 0.04 0.90 2.00 -155.66 -0.31 0.59 16 18 C -0.50 -12.61 8.26 -34.44 -0.28 -12.90 16 19 H 0.06 1.54 7.83 -52.48 -0.41 1.13 16 20 C 0.08 1.97 5.13 -17.82 -0.09 1.88 16 21 N -0.87 -23.02 10.73 55.43 0.59 -22.42 16 22 Si 0.89 19.91 29.55 -169.99 -5.02 14.88 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.20 -4.29 9.96 -26.69 -0.27 -4.55 16 27 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.72 6.54 -51.93 -0.34 1.38 16 31 H 0.13 1.47 6.97 -52.48 -0.37 1.11 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.34 7.90 -52.49 -0.41 0.92 16 36 H 0.16 2.39 6.93 -52.49 -0.36 2.02 16 37 H 0.40 8.41 7.09 -40.82 -0.29 8.12 16 38 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.11 2.91 6.04 -51.92 -0.31 2.60 16 40 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -29.01 374.20 -9.90 -38.91 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.86 Total: 13.25 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -5.08 Total: -19.43 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.27 Total: -37.57 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.15 Total: -15.69 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.01 -9.90 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599874577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.115 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds