Wall clock time and date at job start Tue Mar 31 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33659 * 125.66635 * 2 1 4 4 C 1.34567 * 110.86927 * 180.28077 * 3 2 1 5 5 C 1.47840 * 125.58187 * 179.72863 * 4 3 2 6 6 C 1.39570 * 120.14145 * 179.72609 * 5 4 3 7 7 C 1.37964 * 119.85463 * 179.71802 * 6 5 4 8 8 C 1.38362 * 120.14226 * 0.55112 * 7 6 5 9 9 C 1.38357 * 120.29021 * 359.72505 * 8 7 6 10 10 C 1.37968 * 120.14335 * 359.97438 * 9 8 7 11 11 C 1.35620 * 108.83041 * 359.72525 * 4 3 2 12 12 C 1.36571 * 125.66813 * 179.80310 * 2 1 3 13 13 C 1.47428 * 127.10835 * 0.02562 * 12 2 1 14 14 O 1.21606 * 119.99892 * 356.60361 * 13 12 2 15 15 N 1.34779 * 120.00000 * 176.32639 * 13 12 2 16 16 C 1.46499 * 120.00007 * 185.86608 * 15 13 12 17 17 C 1.52992 * 109.47150 * 183.76175 * 16 15 13 18 18 C 1.50696 * 115.55564 * 306.58597 * 17 16 15 19 19 H 1.08003 * 120.00363 * 144.98579 * 18 17 16 20 20 C 1.37883 * 119.99697 * 324.99144 * 18 17 16 21 21 N 1.31508 * 120.00206 * 350.08517 * 20 18 17 22 22 Si 1.86805 * 119.99788 * 170.08372 * 20 18 17 23 23 H 1.48501 * 109.47049 * 60.00207 * 22 20 18 24 24 H 1.48500 * 109.46803 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47376 * 299.99925 * 22 20 18 26 26 C 1.53003 * 117.49809 * 160.91395 * 17 16 15 27 27 C 1.53007 * 117.49548 * 92.25671 * 17 16 15 28 28 H 1.09001 * 109.47382 * 270.19803 * 1 2 3 29 29 H 1.09004 * 109.47229 * 30.19315 * 1 2 3 30 30 H 1.09000 * 109.46964 * 150.19054 * 1 2 3 31 31 H 1.08003 * 120.07581 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.92883 * 180.30196 * 7 6 5 33 33 H 1.08000 * 119.85387 * 179.74302 * 8 7 6 34 34 H 1.07993 * 119.92628 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.06894 * 180.02562 * 10 9 8 36 36 H 1.08001 * 127.07299 * 180.02562 * 11 4 3 37 37 H 0.96998 * 120.00075 * 5.87347 * 15 13 12 38 38 H 1.08997 * 109.47327 * 303.76600 * 16 15 13 39 39 H 1.09011 * 109.46933 * 63.76499 * 16 15 13 40 40 H 0.97002 * 120.00544 * 185.03435 * 21 20 18 41 41 H 1.08993 * 117.49855 * 0.02562 * 26 17 16 42 42 H 1.09008 * 117.49834 * 145.02450 * 26 17 16 43 43 H 1.09000 * 117.49811 * 214.97574 * 27 17 16 44 44 H 1.08994 * 117.49879 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0859 0.0000 4 6 3.5873 0.7422 -0.0062 5 6 4.7261 1.6850 -0.0137 6 6 6.0356 1.2022 -0.0139 7 6 7.0938 2.0873 -0.0268 8 6 6.8592 3.4509 -0.0281 9 6 5.5635 3.9360 -0.0221 10 6 4.4963 3.0616 -0.0154 11 6 3.6827 -0.6106 -0.0043 12 6 2.3033 -1.1095 0.0038 13 6 1.8668 -2.5177 0.0081 14 8 0.6825 -2.7869 0.0709 15 7 2.7798 -3.5065 -0.0632 16 6 2.3430 -4.8992 -0.1885 17 6 3.5633 -5.8214 -0.1547 18 6 4.6506 -5.4975 -1.1466 19 1 5.6864 -5.6502 -0.8815 20 6 4.3231 -5.0060 -2.3925 21 7 3.0693 -5.0023 -2.7891 22 14 5.6605 -4.3455 -3.5171 23 1 6.6431 -5.4216 -3.8029 24 1 5.0522 -3.8806 -4.7895 25 1 6.3493 -3.2097 -2.8532 26 6 3.3253 -7.2962 0.1760 27 6 3.9904 -6.3784 1.2049 28 1 -0.3634 0.0036 1.0276 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3633 -0.8917 -0.5109 31 1 6.2202 0.1381 -0.0081 32 1 8.1076 1.7150 -0.0319 33 1 7.6911 4.1396 -0.0340 34 1 5.3871 5.0014 -0.0236 35 1 3.4854 3.4416 -0.0112 36 1 4.5881 -1.1995 -0.0075 37 1 3.7262 -3.2960 -0.0314 38 1 1.6773 -5.1470 0.6381 39 1 1.8144 -5.0306 -1.1328 40 1 2.8468 -4.7251 -3.6917 41 1 2.2994 -7.6094 0.3690 42 1 3.9555 -8.0321 -0.3236 43 1 5.0577 -6.5109 1.3817 44 1 3.4022 -6.0875 2.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599874577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:23 Heat of formation + Delta-G solvation = 6.304503 kcal Electronic energy + Delta-G solvation = -26866.942717 eV Core-core repulsion = 23136.693197 eV Total energy + Delta-G solvation = -3730.249520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.66145 -40.35670 -39.88533 -38.43357 -34.94637 -34.21662 -34.02007 -33.87276 -31.89741 -31.32277 -28.41048 -27.57606 -26.89131 -24.57948 -23.42434 -23.14830 -22.89273 -21.73208 -21.18897 -20.39325 -19.06199 -18.17552 -17.51692 -17.39154 -16.76334 -16.70058 -16.55987 -16.04651 -15.85727 -15.74867 -15.29740 -14.88244 -14.66202 -14.39808 -14.18068 -14.08349 -14.04203 -13.88170 -13.65338 -13.59441 -13.39439 -12.86206 -12.78766 -12.69002 -12.32991 -12.28260 -12.06029 -11.97440 -11.46921 -11.09315 -11.08578 -10.86288 -10.64939 -10.49405 -10.12525 -9.94130 -9.66372 -8.93880 -8.03108 -6.19655 -0.26259 0.41229 0.42657 1.30370 1.40989 1.44161 1.50070 1.52820 2.34724 2.39417 2.56202 2.88067 3.04540 3.29144 3.63900 3.70616 3.82659 3.98906 4.03557 4.11905 4.24464 4.26985 4.43307 4.46389 4.50999 4.52500 4.60665 4.66322 4.74048 4.78002 4.80161 4.90967 4.95844 5.07456 5.11618 5.14725 5.19653 5.28976 5.44442 5.50273 5.51550 5.54288 5.58504 5.80100 5.91429 5.96105 5.98707 6.37064 6.74902 6.92089 7.41549 7.43889 8.90852 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004054 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.607808 B = 6905.050772 C = 8288.805140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.076 3.924 3 O -0.168 6.168 4 C 0.023 3.977 5 C -0.037 4.037 6 C -0.112 4.112 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.114 4.114 11 C -0.171 4.171 12 C -0.256 4.256 13 C 0.574 3.426 14 O -0.590 6.590 15 N -0.678 5.678 16 C 0.176 3.824 17 C 0.011 3.989 18 C -0.508 4.508 19 H 0.060 0.940 20 C 0.041 3.959 21 N -0.892 5.892 22 Si 0.939 3.061 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.261 1.261 26 C -0.196 4.196 27 C -0.187 4.187 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.166 0.834 37 H 0.403 0.597 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 18.191 5.865 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.023 3.977 3 O -0.065 6.065 4 C -0.025 4.025 5 C -0.037 4.037 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.136 4.136 10 C -0.132 4.132 11 C -0.190 4.190 12 C -0.261 4.261 13 C 0.363 3.637 14 O -0.475 6.475 15 N -0.324 5.324 16 C 0.052 3.948 17 C 0.010 3.990 18 C -0.546 4.546 19 H 0.078 0.922 20 C -0.161 4.161 21 N -0.529 5.529 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.186 1.186 26 C -0.235 4.235 27 C -0.224 4.224 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.238 0.762 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.053 18.368 5.747 19.668 hybrid contribution 0.863 -0.567 -0.852 1.339 sum 4.916 17.801 4.895 19.105 Atomic orbital electron populations 1.20647 0.81744 1.05289 1.05337 1.23243 0.94988 0.82344 0.97113 1.83687 1.16301 1.34563 1.71933 1.20498 0.81663 0.92879 1.07503 1.17897 0.89134 0.91936 1.04758 1.21325 0.90884 1.01157 0.99668 1.21407 0.99415 0.93563 0.99254 1.21707 0.97838 0.95716 0.97582 1.21440 0.92090 1.00900 0.99147 1.21435 1.00795 0.91556 0.99419 1.22995 0.96766 0.93565 1.05695 1.21232 0.94275 0.93709 1.16861 1.17479 0.85361 0.84495 0.76407 1.90638 1.17730 1.84878 1.54217 1.45516 1.09587 1.06526 1.70798 1.20705 0.95368 0.79206 0.99514 1.19221 0.94991 0.91219 0.93583 1.20647 0.91868 1.43741 0.98308 0.92169 1.25519 0.96655 0.95002 0.98941 1.69989 1.18253 1.46896 1.17718 0.85894 0.79915 0.79426 0.78229 1.19863 1.22083 1.18598 1.22932 0.99633 0.95995 1.04929 1.22957 0.99858 1.06516 0.93099 0.87864 0.87717 0.89245 0.85320 0.83130 0.82655 0.82843 0.85130 0.81669 0.76194 0.95688 0.90696 0.93208 0.90674 0.90472 0.89647 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 9.85 71.23 0.70 -1.26 16 2 C 0.08 2.51 7.36 25.29 0.19 2.69 16 3 O -0.17 -5.14 10.25 0.97 0.01 -5.13 16 4 C 0.02 0.69 7.01 24.21 0.17 0.86 16 5 C -0.04 -0.94 5.87 -20.10 -0.12 -1.06 16 6 C -0.11 -2.53 9.55 22.53 0.22 -2.32 16 7 C -0.12 -2.02 10.03 22.23 0.22 -1.80 16 8 C -0.11 -1.57 10.04 22.33 0.22 -1.35 16 9 C -0.12 -1.83 10.03 22.23 0.22 -1.61 16 10 C -0.11 -2.39 9.71 22.53 0.22 -2.17 16 11 C -0.17 -5.74 9.93 23.87 0.24 -5.51 16 12 C -0.26 -9.73 6.30 -19.04 -0.12 -9.85 16 13 C 0.57 25.57 7.81 86.66 0.68 26.25 16 14 O -0.59 -28.65 14.85 -4.05 -0.06 -28.71 16 15 N -0.68 -30.64 5.27 -466.37 -2.46 -33.10 16 16 C 0.18 8.57 4.74 86.38 0.41 8.98 16 17 C 0.01 0.50 2.00 -52.93 -0.11 0.39 16 18 C -0.51 -25.64 8.26 25.60 0.21 -25.43 16 19 H 0.06 2.99 7.83 -2.91 -0.02 2.97 16 20 C 0.04 2.10 5.13 84.66 0.43 2.54 16 21 N -0.89 -48.82 10.73 21.45 0.23 -48.59 16 22 Si 0.94 40.99 29.55 68.60 2.03 43.02 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 C -0.20 -8.53 9.96 30.62 0.30 -8.22 16 27 C -0.19 -7.57 9.92 30.62 0.30 -7.27 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.09 2.82 6.54 -2.39 -0.02 2.80 16 31 H 0.13 2.85 6.97 -2.91 -0.02 2.83 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.13 2.53 7.90 -2.91 -0.02 2.51 16 36 H 0.17 5.12 6.93 -2.91 -0.02 5.10 16 37 H 0.40 17.45 7.09 -92.71 -0.66 16.79 16 38 H 0.02 1.20 8.06 -2.39 -0.02 1.18 16 39 H 0.08 4.20 6.04 -2.38 -0.01 4.18 16 40 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 43 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -63.60 374.20 4.52 -59.08 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.37 Total: 39.56 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.40 Total: -26.13 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.23 Total: -81.69 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.05 Total: -33.84 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -63.60 4.52 -59.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599874577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.386 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds