Wall clock time and date at job start Tue Mar 31 2020 14:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46784 * 2 1 4 4 C 1.52993 * 109.47315 * 305.19447 * 3 2 1 5 5 C 1.53004 * 109.47177 * 295.36571 * 4 3 2 6 6 C 1.53005 * 109.47234 * 65.19471 * 3 2 1 7 7 N 1.46505 * 109.47245 * 64.99841 * 6 3 2 8 8 C 1.46503 * 119.99857 * 90.00050 * 7 6 3 9 9 C 1.50697 * 109.47079 * 91.23672 * 8 7 6 10 10 H 1.07996 * 119.99885 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99806 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00154 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47306 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47181 * 120.00467 * 13 11 9 16 16 H 1.48507 * 109.47040 * 240.00093 * 13 11 9 17 17 C 1.34770 * 120.00128 * 270.00344 * 7 6 3 18 18 O 1.21618 * 119.99954 * 6.07590 * 17 7 6 19 19 C 1.47378 * 120.00394 * 186.07264 * 17 7 6 20 20 C 1.36334 * 127.14435 * 7.38269 * 19 17 7 21 21 O 1.33949 * 108.56889 * 179.89013 * 20 19 17 22 22 C 1.34311 * 110.89550 * 0.38895 * 21 20 19 23 23 S 1.76200 * 125.52475 * 179.78180 * 22 21 20 24 24 C 1.81395 * 103.00150 * 359.97412 * 23 22 21 25 25 C 1.35121 * 108.94956 * 359.75981 * 22 21 20 26 26 H 1.08996 * 109.46749 * 66.37145 * 1 2 3 27 27 H 1.09009 * 109.46737 * 186.36841 * 1 2 3 28 28 H 1.08998 * 109.47395 * 306.36854 * 1 2 3 29 29 H 1.08993 * 109.47589 * 240.00218 * 2 1 3 30 30 H 1.09000 * 109.47063 * 119.99619 * 2 1 3 31 31 H 1.09004 * 109.47427 * 185.18932 * 3 2 1 32 32 H 1.09008 * 109.47134 * 55.36481 * 4 3 2 33 33 H 1.09003 * 109.47375 * 175.36631 * 4 3 2 34 34 H 1.08995 * 109.47054 * 65.33717 * 5 4 3 35 35 H 1.08996 * 109.47102 * 185.33685 * 5 4 3 36 36 H 1.08994 * 109.46537 * 305.33472 * 5 4 3 37 37 H 1.09003 * 109.47085 * 305.00191 * 6 3 2 38 38 H 1.08997 * 109.47403 * 184.99957 * 6 3 2 39 39 H 1.08999 * 109.46744 * 211.23885 * 8 7 6 40 40 H 1.09003 * 109.46835 * 331.23445 * 8 7 6 41 41 H 0.97006 * 120.00376 * 180.02562 * 12 11 9 42 42 H 1.08007 * 125.71314 * 0.03169 * 20 19 17 43 43 H 1.09003 * 109.47034 * 59.99898 * 24 23 22 44 44 H 1.09002 * 109.46990 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47116 * 299.99817 * 24 23 22 46 46 H 1.07998 * 127.06452 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4261 2.2005 -1.1787 5 6 1.9196 1.5884 -2.4913 6 6 1.6393 2.1251 1.3094 7 7 2.3224 1.4726 2.4292 8 6 3.6358 1.9526 2.8661 9 6 3.4581 2.9915 3.9432 10 1 2.4661 3.2669 4.2694 11 6 4.5620 3.5903 4.5123 12 7 5.7700 3.2552 4.1147 13 14 4.3417 4.8775 5.8479 14 1 2.8937 5.0740 6.1122 15 1 5.0148 4.4217 7.0906 16 1 4.9416 6.1609 5.4023 17 6 1.7426 0.4307 3.0574 18 8 0.7064 -0.0386 2.6272 19 6 2.3643 -0.1402 4.2656 20 6 3.4364 0.3506 4.9500 21 8 3.6860 -0.4578 5.9885 22 6 2.8181 -1.4824 6.0173 23 16 2.7996 -2.7751 7.2145 24 6 4.1859 -2.3440 8.3020 25 6 1.9611 -1.3609 4.9797 26 1 -0.3633 0.4119 -0.9415 27 1 -0.3633 -1.0214 0.1140 28 1 -0.3634 0.6094 0.8275 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1260 1.4441 -0.0930 32 1 0.3394 2.1290 -1.1305 33 1 1.7237 3.2480 -1.1318 34 1 1.5419 0.5700 -2.5819 35 1 1.5591 2.1855 -3.3288 36 1 3.0095 1.5738 -2.4981 37 1 0.5608 2.0454 1.4456 38 1 1.9242 3.1766 1.2731 39 1 4.2156 1.1174 3.2589 40 1 4.1616 2.3935 2.0192 41 1 6.5467 3.6762 4.5153 42 1 3.9902 1.2431 4.6984 43 1 4.0105 -1.3625 8.7425 44 1 4.2708 -3.0876 9.0945 45 1 5.1090 -2.3226 7.7229 46 1 1.1474 -2.0243 4.7264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601039732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:24 Heat of formation + Delta-G solvation = -21.590407 kcal Electronic energy + Delta-G solvation = -26687.770358 eV Core-core repulsion = 23091.755176 eV Total energy + Delta-G solvation = -3596.015182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87023 -39.30143 -36.68346 -35.06292 -32.76450 -32.23103 -30.75543 -29.74868 -29.00359 -28.00297 -27.18944 -24.37043 -23.38971 -23.10280 -21.60511 -21.20749 -19.30615 -18.52431 -17.38795 -16.75903 -16.16549 -15.69500 -15.48958 -15.36215 -15.18578 -14.76099 -14.54198 -14.00576 -13.61046 -13.51869 -13.25441 -13.12891 -12.75153 -12.57237 -12.52149 -12.44891 -12.17814 -11.81703 -11.64302 -11.37819 -11.22463 -11.11883 -11.08775 -10.87963 -10.77292 -10.45047 -10.33428 -10.16000 -9.97558 -9.94658 -9.79073 -9.65178 -9.09007 -8.95561 -8.72173 -7.72532 -7.13010 -6.44461 -4.55312 1.43248 2.06802 2.09820 2.43423 3.08869 3.19033 3.23779 3.78653 4.08448 4.17394 4.27952 4.86868 5.04007 5.09239 5.17993 5.18326 5.26121 5.34437 5.53749 5.66861 5.70823 5.73012 5.76403 5.80848 6.02095 6.04563 6.05706 6.13325 6.17357 6.20393 6.22552 6.39849 6.46310 6.55563 6.61446 6.65450 6.72920 6.88332 6.93721 6.99209 7.02340 7.43784 7.48003 7.56562 7.76494 8.27832 8.60099 9.04907 9.15538 10.57977 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.005105 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.618163 B = 5483.625720 C = 7981.840639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.127 3.873 7 N -0.591 5.591 8 C 0.217 3.783 9 C -0.550 4.550 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.881 5.881 13 Si 0.896 3.104 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.588 3.412 18 O -0.559 6.559 19 C -0.244 4.244 20 C 0.042 3.958 21 O -0.181 6.181 22 C -0.063 4.063 23 S -0.046 6.046 24 C -0.147 4.147 25 C -0.124 4.124 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.271 0.729 42 H 0.277 0.723 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -6.200 -0.935 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.123 4.123 4 C -0.157 4.157 5 C -0.206 4.206 6 C 0.003 3.997 7 N -0.321 5.321 8 C 0.096 3.904 9 C -0.588 4.588 10 H 0.088 0.912 11 C -0.140 4.140 12 N -0.517 5.517 13 Si 0.723 3.277 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.204 1.204 17 C 0.378 3.622 18 O -0.441 6.441 19 C -0.250 4.250 20 C -0.030 4.030 21 O -0.078 6.078 22 C -0.222 4.222 23 S 0.190 5.810 24 C -0.316 4.316 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.291 0.709 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.560 -7.323 -0.732 8.175 hybrid contribution 0.863 1.884 0.515 2.135 sum -2.697 -5.439 -0.217 6.075 Atomic orbital electron populations 1.21744 0.95901 1.01287 1.00550 1.21467 0.96477 0.95732 1.01039 1.21605 1.00279 0.95881 0.94485 1.21550 1.00816 0.99172 0.94152 1.21763 1.01082 1.00785 0.96983 1.21427 0.97582 0.96047 0.84603 1.47910 1.21317 1.31125 1.31704 1.19905 0.79050 0.95102 0.96300 1.21659 0.93878 1.22612 1.20661 0.91171 1.25061 0.94940 0.96673 0.97308 1.69934 0.97912 1.42173 1.41705 0.86430 0.78913 0.81191 0.81189 1.19280 1.20437 1.20441 1.17147 0.83740 0.79564 0.81760 1.90676 1.24575 1.61912 1.66930 1.21354 1.02006 0.99722 1.01877 1.28176 0.97085 0.94541 0.83192 1.84073 1.48273 1.30550 1.44940 1.23753 0.98261 0.96128 1.04010 1.85383 1.42082 1.27539 1.25976 1.23551 0.99914 1.06332 1.01782 1.22355 1.00596 0.97957 0.94247 0.94413 0.94034 0.91041 0.93674 0.91430 0.91323 0.91619 0.92227 0.92728 0.93354 0.92929 0.90676 0.90627 0.93763 0.93865 0.91883 0.70883 0.89417 0.87542 0.89388 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.05 37.16 0.30 -1.87 16 2 C -0.11 -1.79 4.79 -26.73 -0.13 -1.92 16 3 C -0.10 -1.62 2.37 -90.62 -0.22 -1.83 16 4 C -0.12 -1.55 5.07 -26.73 -0.14 -1.69 16 5 C -0.15 -1.74 9.53 37.16 0.35 -1.38 16 6 C 0.13 2.27 4.89 -4.04 -0.02 2.25 16 7 N -0.59 -12.14 2.34 -176.34 -0.41 -12.55 16 8 C 0.22 4.82 4.65 -5.19 -0.02 4.80 16 9 C -0.55 -13.10 7.13 -34.44 -0.25 -13.34 16 10 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.07 1.58 4.92 -17.82 -0.09 1.49 16 12 N -0.88 -22.00 13.29 55.43 0.74 -21.27 16 13 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.59 12.65 6.41 -12.54 -0.08 12.57 16 18 O -0.56 -12.32 12.28 5.26 0.06 -12.25 16 19 C -0.24 -5.17 6.12 -103.29 -0.63 -5.81 16 20 C 0.04 0.88 9.55 30.05 0.29 1.17 16 21 O -0.18 -3.59 10.19 6.63 0.07 -3.53 16 22 C -0.06 -1.15 7.32 29.62 0.22 -0.93 16 23 S -0.05 -0.64 22.74 -107.50 -2.44 -3.08 16 24 C -0.15 -1.61 10.45 101.05 1.06 -0.55 16 25 C -0.12 -2.38 10.98 -37.11 -0.41 -2.79 16 26 H 0.04 0.51 6.63 -51.93 -0.34 0.17 16 27 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.07 1.25 4.84 -51.93 -0.25 1.00 16 29 H 0.04 0.67 6.94 -51.93 -0.36 0.31 16 30 H 0.07 1.30 5.47 -51.93 -0.28 1.01 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.84 6.22 -51.92 -0.32 0.51 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.36 5.74 -51.93 -0.30 1.07 16 38 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.04 1.03 4.94 -51.93 -0.26 0.77 16 40 H 0.04 1.00 8.06 -51.93 -0.42 0.59 16 41 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 42 H 0.28 6.26 2.82 -52.48 -0.15 6.12 16 43 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 44 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -25.67 369.93 -8.01 -33.68 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.81 Total: 9.06 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.24 Total: -9.83 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.32 Total: -33.81 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.13 Total: -15.78 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.44 Total: -3.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -25.67 -8.01 -33.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.092 kcal (2) G-P(sol) polarization free energy of solvation -25.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds